EMLSAG00000002264, EMLSAG00000002264-685030 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002264
Unique NameEMLSAG00000002264-685030
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002264 vs. C. finmarchicus
Match: gi|592923728|gb|GAXK01034687.1| (TSA: Calanus finmarchicus comp7364746_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.390e+0
Identity = 25/85 (29.41%), Postives = 34/85 (40.00%), Query Frame = 0 
Query:    9 GLIREIWAKRSLQLQVEEGKSETYQEEAXAAYFALCS----------FDRPTLVSLKSILDPRKGIPRDTCLKLSPDPDTFLLLQ 83
            G   +IW      L V +G+ E+ Q+E  A  F LCS          F+      LK  L  +K I  D   K + D     +LQ
Sbjct:   89 GTKLDIWEPDEDDLHVAKGQLESAQKEVSAVGFGLCSAYTNKGIKVLFENVLEAGLKHKLKRKKDIFVDALYKSTNDQACLKVLQ 343
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BLAST of EMLSAG00000002264 vs. C. finmarchicus
Match: gi|592857036|gb|GAXK01100508.1| (TSA: Calanus finmarchicus comp7468_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 2.068e+0
Identity = 16/46 (34.78%), Postives = 25/46 (54.35%), Query Frame = 0 
Query:   23 QVEEGKSETYQEEAXAAYFALCSFDRPTLVSLKSILDPRKGIPRDT 68
            ++ +G+   +Q E   +  A C  DRPTLVS  S  D  K + ++T
Sbjct: 2652 EISQGQGRIHQSEGSPSEQAYCRLDRPTLVSSHSS*D--KAVHQNT 2783
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BLAST of EMLSAG00000002264 vs. C. finmarchicus
Match: gi|592757656|gb|GAXK01196757.1| (TSA: Calanus finmarchicus comp249041_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 9.589e+0
Identity = 20/41 (48.78%), Postives = 24/41 (58.54%), Query Frame = 0 
Query:   79 FLLLQ----TLKFSSRPFAPLKP--ICSLNKSRGLRDCPSR 113
            FL LQ    TL  ++ P   L+P  +C LN SRGLRD  SR
Sbjct:  320 FLFLQLKEDTLISTASP*LVLQPW*VCPLNISRGLRDSNSR 442
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BLAST of EMLSAG00000002264 vs. L. salmonis peptides
Match: EMLSAP00000002264 (pep:novel supercontig:LSalAtl2s:LSalAtl2s142:1435913:1437540:1 gene:EMLSAG00000002264 transcript:EMLSAT00000002264 description:"maker-LSalAtl2s142-snap-gene-13.25")

HSP 1 Score: 338.576 bits (867), Expect = 9.269e-120
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0 
Query:    1 MWXCGRKKGLIREIWAKRSLQLQVEEGKSETYQEEAXAAYFALCSFDRPTLVSLKSILDPRKGIPRDTCLKLSPDPDTFLLLQTLKFSSRPFAPLKPICSLNKSRGLRDCPSRDPQQQEDLVFCLNPRHWNFIFLPDIPELPNADSDTDTVKKILKESNTLSDVSFSLA 169
            MWXCGRKKGLIREIWAKRSLQLQVEEGKSETYQEEAXAAYFALCSFDRPTLVSLKSILDPRKGIPRDTCLKLSPDPDTFLLLQTLKFSSRPFAPLKPICSLNKSRGLRDCPSRDPQQQEDLVFCLNPRHWNFIFLPDIPELPNADSDTDTVKKILKESNTLSDVSFSLA
Sbjct:    1 MWXCGRKKGLIREIWAKRSLQLQVEEGKSETYQEEAXAAYFALCSFDRPTLVSLKSILDPRKGIPRDTCLKLSPDPDTFLLLQTLKFSSRPFAPLKPICSLNKSRGLRDCPSRDPQQQEDLVFCLNPRHWNFIFLPDIPELPNADSDTDTVKKILKESNTLSDVSFSLA 169
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002264 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002264 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592923728|gb|GAXK01034687.1|1.390e+029.41TSA: Calanus finmarchicus comp7364746_c0_seq1 tran... [more]
gi|592857036|gb|GAXK01100508.1|2.068e+034.78TSA: Calanus finmarchicus comp7468_c2_seq3 transcr... [more]
gi|592757656|gb|GAXK01196757.1|9.589e+048.78TSA: Calanus finmarchicus comp249041_c0_seq1 trans... [more]
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BLAST of EMLSAG00000002264 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000022649.269e-120100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s142:14359... [more]
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BLAST of EMLSAG00000002264 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002264 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002264 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002264 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s142supercontigLSalAtl2s142:1435913..1437540 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s142-snap-gene-13.25
NoteHypothetical protein
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002264 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002264EMLSAT00000002264-698111Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s142:1435913..1437540+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002264-685030 ID=EMLSAG00000002264-685030|Name=EMLSAG00000002264|organism=Lepeophtheirus salmonis|type=gene|length=1628bp|location=Sequence derived from alignment at LSalAtl2s142:1435913..1437540+ (Lepeophtheirus salmonis)
ATGTGGYTTTGCGGMCGAAAAAAGGGTTTGATTCGTGAGATCTGGGCCAA
ACGATCCCTCCAACTGCAAGTGGAAGAGGGGAAGAGTGAGACTTACCAAG
AAGAGGCTGYCGCCGCCTACTTTGCACTCTGCTCCTTTGATCGACCCACT
CTTGTATCTCTCAAATCTATCCTTGATCCTAGGAAAGGAATCCCCCGTGA
CACCTGTCTGAAGCTGTCCCCGGATCCAGATACCTTTCTCCTTCTCCAGA
CTCTCAAGTTCTCATCACGTCCCTTTGCACCACTCAAGCCCATCTGCTCT
TTAAACAAAAGTAGAGGACTGAGGGATTGCCCTTCAAGAGATCCACAGCA
ACAAGAGGACCTGGTCTTTTGTCTCAATCCCCGTCATTGGAATTTCATCT
TTCTACCTGGTAGGGATCGGGTTTATAATTTATCATCTCTAGCTCAGTGT
ATCATTCATTTGAGTAGTATCATTCTAGTCTTAGTCTCTGGCTTCTCTCT
CCTCGTCTTCTCCTACTTGTTTTTAGACTTACATACATCTTCTTATTTAT
GTCTTATGATAATTTTTGTCTTGGCGCCTTACAGACCCACCTTATCCATA
CGAATTTTCATATCTTGCAAAAATGAGTACATATCTCTGTCTCTTTAAAT
GAACTTGATTTTATATTTATACATATATATGTATGTTTGATAAAGAAGGA
AGAAAATGTGTCTTAATATGAAAGAAAAAATTTAATTTTTTTTCTCTCTC
CCCTGACATGAGATTGTTTAAAAGTCATGCTTTGAAGTGATTTAATAAGA
ATAGCTTATTCTTCTTATTATTGATATCTAATGAACAAACAACTTTGCTT
TACTATATATAAAAGATTGTAGTAGGAATAAGCATGTTTTCCTTTACGAT
AATGATGTCAAACTATGCTGAACTGACGGCAATTCCATCATTTTATTAGA
TGCCACAAGTTTCTTAACATCTCTTATTGATAAATGTATTTTTATTACTC
ATTTTTCATTTCTTGTCTTAATTAAATAACATGCGCATGTACCTTTGTAC
ATAAATCAAATAAGTAGTATTTTTAGACACAAGTCAGTAATGTGTACTTA
AACATATATTCTATAAATAAAAAGTAAAATGGACTCTTGAATGACCCTCG
TGGACATTTCATTTGCTACATTTTAGCAGAAGGGATTTTTTATTTTTTAT
TTCGACTCATTAAAGTGGATCAACTTCTTGTTGAATAAGTCATGATTGTC
GTCTATCTCCGTTAGTATACATAGCTACATTAAAATACATTAAGGAAGTG
GGATTTAAGTATATGTATATTGTTCAAATTTGTGGTTCCTTCAATATTTG
AAACTTTTGAGGATAGATTTATTCCCCATTTCTCTTTTAATTTAAAGGAA
TGGCACGGCCTTTCTCTCTGTATGGCTCCAATATATTCATACTTCTTACA
CTTTTCCTTTTTTTATTTTCAGATATCCCCGAACTTCCGAATGCCGACTC
TGACACGGATACAGTTAAAAGTAAGTCCATAAAATCCAAATGAAAAATTT
ATCAACACACAAGCCCTTTATTTTCCAGAAATCCTTAAAGAATCAAATAC
ATTGTCAGATGTTAGCTTCTCGCTTGCG
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