EMLSAG00000002863, EMLSAG00000002863-685629 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002863
Unique NameEMLSAG00000002863-685629
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002863 vs. C. finmarchicus
Match: gi|592860836|gb|GAXK01096726.1| (TSA: Calanus finmarchicus comp54926_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 115.161 bits (287), Expect = 8.767e-29
Identity = 49/88 (55.68%), Postives = 66/88 (75.00%), Query Frame = 0 
Query:  164 QLXSRFSNFGHSNNMGYGFNDWNRWRQQDGFLCRNNNDCVWIDPSLECDDYKLDFSPSNLWFGGDVASIKGKCECRNNFLWNDDDLHC 251
            Q+    + F H ++ G+GFNDWNRWR+QDG LCRNNNDC W+D +L+C+DY+LDFS S  W+GGD A+I G+CEC+    W+D +L C
Sbjct:  186 QIGKATTRFAHWSHQGWGFNDWNRWREQDGHLCRNNNDCNWLDRNLQCEDYELDFSVSRAWYGGDFAAIVGECECQGGMEWDDRELQC 449
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BLAST of EMLSAG00000002863 vs. C. finmarchicus
Match: gi|592818700|gb|GAXK01135868.1| (TSA: Calanus finmarchicus comp153409_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 91.2781 bits (225), Expect = 1.985e-20
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 0 
Query:  182 FNDWNRWRQQDGFLCRNNNDCVWIDPSLECDDYKLDFSPSNLWFGGDVASIKGKCECRNNFLWNDDDLHC 251
            FND+NRWR+QDG LCR++ DC W+D +++C+DY+LDFS +  WFGGD  +I G+CECR    W++ +L C
Sbjct:  352 FNDYNRWREQDGMLCRSSMDCSWMDQNMQCEDYELDFSMNRGWFGGDYLAIVGECECRYGMKWDNWELRC 561
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BLAST of EMLSAG00000002863 vs. C. finmarchicus
Match: gi|592942145|gb|GAXK01016408.1| (TSA: Calanus finmarchicus comp450864_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 71.633 bits (174), Expect = 8.111e-14
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 0 
Query:  180 YGFNDWNRWRQQDGFLCRNNNDCVWIDPSLECDDYKLDF------SPSNLWFGGDVASIKGKCEC-RNNFLWNDDDLHC 251
            Y F  W+ WRQ DGF+CRNN+DC W+D  L C++Y+L        S +  WFGG   S+ G+C C R N +W+  +L C
Sbjct:  322 YIFTRWDSWRQADGFMCRNNDDCNWLDQDLRCENYELSVLDQRRQSINPGWFGGQALSVVGECHCQRMNQIWDRQELQC 558
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BLAST of EMLSAG00000002863 vs. C. finmarchicus
Match: gi|592942146|gb|GAXK01016407.1| (TSA: Calanus finmarchicus comp450864_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 67.0106 bits (162), Expect = 7.038e-12
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 0 
Query:  182 FNDWNRWRQQDGFLCRNNNDCVWIDPSLECDDYKLDFSPSNL------WFGGDVASIKGKCEC-RNNFLWNDDDLHC 251
            FN W+ WR+ DGF+CR++ DC W+D  L C+ Y++      L      WFGG   ++ G+C C R + +W+  +L C
Sbjct:  319 FNQWDSWREADGFMCRDHEDCNWLDEDLRCEKYEVSVLGQRLQSIDQGWFGGQAMALVGECHCQRMHQIWDKQELQC 549
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BLAST of EMLSAG00000002863 vs. C. finmarchicus
Match: gi|592942144|gb|GAXK01016409.1| (TSA: Calanus finmarchicus comp450864_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 54.6842 bits (130), Expect = 2.403e-8
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 0 
Query:  180 YGFNDWNRWRQQDGFLCRNNNDCVWIDPSLECDDYKLDF------SPSNLWFGG 227
            Y F  W+ WRQ DGF+CRNN+DC W+D  L C++Y+L        S +  WFGG
Sbjct:  322 YIFTRWDSWRQADGFMCRNNDDCNWLDQDLRCENYELSVLDQRRQSINQGWFGG 483
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BLAST of EMLSAG00000002863 vs. C. finmarchicus
Match: gi|592902891|gb|GAXK01055484.1| (TSA: Calanus finmarchicus comp84655_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 4.211e+0
Identity = 25/92 (27.17%), Postives = 39/92 (42.39%), Query Frame = 0 
Query:  171 NFGHSNNMGYGFNDWNRWRQQ----------DGFL-CRNNNDCVWIDPSLECDDYKLDFSPSNLWFGGDVASIKGKCECRNNFLWNDDDLHC 251
            N+G++   G   +DW R  Q           D F  C +  DC+ +D +L C+    D +           +  G+CECR +  WN + L C
Sbjct: 1519 NYGYTKKWGRCESDWGRVPQTQIQQYRPTAFDPFKSCSSAMDCMNMDMNLICNK---DLT---------TQATVGQCECRRDMKWNTEALEC 1758
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BLAST of EMLSAG00000002863 vs. C. finmarchicus
Match: gi|592835295|gb|GAXK01122249.1| (TSA: Calanus finmarchicus comp107027_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 4.769e+0
Identity = 18/56 (32.14%), Postives = 27/56 (48.21%), Query Frame = 0 
Query:  196 CRNNNDCVWIDPSLECDDYKLDFSPSNLWFGGDVASIKGKCECRNNFLWNDDDLHC 251
            C  ++ C+ +D +L C+        +NL   G      GKCECRN+  WN +   C
Sbjct:  953 CTESSTCMSVDMNLICN--------TNLTMQGS-----GKCECRNDMRWNKESGEC 1081
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BLAST of EMLSAG00000002863 vs. C. finmarchicus
Match: gi|592865256|gb|GAXK01092306.1| (TSA: Calanus finmarchicus comp76159_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 6.053e+0
Identity = 20/56 (35.71%), Postives = 27/56 (48.21%), Query Frame = 0 
Query:  196 CRNNNDCVWIDPSLECDDYKLDFSPSNLWFGGDVASIKGKCECRNNFLWNDDDLHC 251
            C +  DC  +D +L C+         +L   GDV    GKCECR +  WN + L C
Sbjct: 1341 CNSAMDCQNMDMNLICN--------KDLTTQGDV----GKCECRRDMKWNSEALEC 1472
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BLAST of EMLSAG00000002863 vs. C. finmarchicus
Match: gi|592865257|gb|GAXK01092305.1| (TSA: Calanus finmarchicus comp76159_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 6.849e+0
Identity = 20/56 (35.71%), Postives = 27/56 (48.21%), Query Frame = 0 
Query:  196 CRNNNDCVWIDPSLECDDYKLDFSPSNLWFGGDVASIKGKCECRNNFLWNDDDLHC 251
            C +  DC  +D +L C+         +L   GDV    GKCECR +  WN + L C
Sbjct: 1341 CNSAMDCQNMDMNLICN--------KDLTTQGDV----GKCECRRDMKWNSEALEC 1472

HSP 2 Score: 30.8018 bits (68), Expect = 6.849e+0
Identity = 20/56 (35.71%), Postives = 27/56 (48.21%), Query Frame = 0 
Query:  196 CRNNNDCVWIDPSLECDDYKLDFSPSNLWFGGDVASIKGKCECRNNFLWNDDDLHC 251
            C +  DC  +D +L C+         +L   GDV    GKCECR +  WN + L C
Sbjct: 4418 CNSAMDCQNMDMNLICN--------KDLTTQGDV----GKCECRRDMKWNSEALEC 4549
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BLAST of EMLSAG00000002863 vs. L. salmonis peptides
Match: EMLSAP00000002863 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1659:24105:25688:1 gene:EMLSAG00000002863 transcript:EMLSAT00000002863 description:"maker-LSalAtl2s1659-augustus-gene-0.15")

HSP 1 Score: 563.533 bits (1451), Expect = 0.000e+0
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0 
Query:    1 MTKLSLVLILVLCFLQTGIGRKSSGGSSSRGNIGGGGWSSGGSSSSSSGGGWGTSSQNRGNIGGGGWNTGGSSSGGSAGGWNXGGSNSNTGSGKKGGLGSLFGSKKTGSDSSSGGKKGILGSLFGKKKTSNEGFGKKKKGSKLKTLKKAAVIGAVAYGGXKXGQLXSRFSNFGHSNNMGYGFNDWNRWRQQDGFLCRNNNDCVWIDPSLECDDYKLDFSPSNLWFGGDVASIKGKCECRNNFLWNDDDLHCLKRSGGFGGGGGGGLGGLIISIIVIMSMVCCCCVIGCVFIVKMFIGRASEG 302
            MTKLSLVLILVLCFLQTGIGRKSSGGSSSRGNIGGGGWSSGGSSSSSSGGGWGTSSQNRGNIGGGGWNTGGSSSGGSAGGWNXGGSNSNTGSGKKGGLGSLFGSKKTGSDSSSGGKKGILGSLFGKKKTSNEGFGKKKKGSKLKTLKKAAVIGAVAYGGXKXGQLXSRFSNFGHSNNMGYGFNDWNRWRQQDGFLCRNNNDCVWIDPSLECDDYKLDFSPSNLWFGGDVASIKGKCECRNNFLWNDDDLHCLKRSGGFGGGGGGGLGGLIISIIVIMSMVCCCCVIGCVFIVKMFIGRASEG
Sbjct:    1 MTKLSLVLILVLCFLQTGIGRKSSGGSSSRGNIGGGGWSSGGSSSSSSGGGWGTSSQNRGNIGGGGWNTGGSSSGGSAGGWNXGGSNSNTGSGKKGGLGSLFGSKKTGSDSSSGGKKGILGSLFGKKKTSNEGFGKKKKGSKLKTLKKAAVIGAVAYGGXKXGQLXSRFSNFGHSNNMGYGFNDWNRWRQQDGFLCRNNNDCVWIDPSLECDDYKLDFSPSNLWFGGDVASIKGKCECRNNFLWNDDDLHCLKRSGGFGGGGGGGLGGLIISIIVIMSMVCCCCVIGCVFIVKMFIGRASEG 302
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002863 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002863 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592860836|gb|GAXK01096726.1|8.767e-2955.68TSA: Calanus finmarchicus comp54926_c0_seq1 transc... [more]
gi|592818700|gb|GAXK01135868.1|1.985e-2054.29TSA: Calanus finmarchicus comp153409_c1_seq1 trans... [more]
gi|592942145|gb|GAXK01016408.1|8.111e-1444.30TSA: Calanus finmarchicus comp450864_c0_seq2 trans... [more]
gi|592942146|gb|GAXK01016407.1|7.038e-1237.66TSA: Calanus finmarchicus comp450864_c0_seq1 trans... [more]
gi|592942144|gb|GAXK01016409.1|2.403e-848.15TSA: Calanus finmarchicus comp450864_c0_seq3 trans... [more]
gi|592902891|gb|GAXK01055484.1|4.211e+027.17TSA: Calanus finmarchicus comp84655_c1_seq1 transc... [more]
gi|592835295|gb|GAXK01122249.1|4.769e+032.14TSA: Calanus finmarchicus comp107027_c0_seq1 trans... [more]
gi|592865256|gb|GAXK01092306.1|6.053e+035.71TSA: Calanus finmarchicus comp76159_c1_seq2 transc... [more]
gi|592865257|gb|GAXK01092305.1|6.849e+035.71TSA: Calanus finmarchicus comp76159_c1_seq1 transc... [more]
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BLAST of EMLSAG00000002863 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000028630.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1659:2410... [more]
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BLAST of EMLSAG00000002863 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002863 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002863 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002863 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1659supercontigLSalAtl2s1659:24105..25688 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1659-augustus-gene-0.15
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002863 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002863EMLSAT00000002863-698710Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1659:24105..25688+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002863-685629 ID=EMLSAG00000002863-685629|Name=EMLSAG00000002863|organism=Lepeophtheirus salmonis|type=gene|length=1584bp|location=Sequence derived from alignment at LSalAtl2s1659:24105..25688+ (Lepeophtheirus salmonis)
ATGACAAAGTTATCTTTGGTCCTTATTTTGGTTCTCTGCTTCCTCCAGAC
TGGGATTGGACGGAAGTCTAGTGGAGGCTCTTCGTCTAGGGGAAACATTG
GCGGGGGTGGATGGTCCAGTGGCGGGAGTAGTAGTAGTAGTAGCGGGGGT
GGATGGGGCACTTCTTCCCAAAACAGGGGTAATATTGGAGGAGGGGGATG
GAATACGGGTGGATCTTCCAGTGGTGGAAGTGCTGGAGGATGGAACKCTG
GGGGGTGAGTGTACATTACCTGAATTCCCTGTCCTATTCATTATTTCATC
CCTTACTTTGGTAGGTCCAATTCGAATACAGGCTCTGGGAAGAAAGGAGG
CCTAGGAAGTCTCTTTGGAAGTAAAAAAACAGGCTCTGATTCTTCCTCTG
GAGGAAAGAAGGGCATCCTGGGAAGTCTCTTTGGTAAGAAGAAGACATCC
AACGAAGGATTTGGTAAAAAGAAAAAGGGCTCCAAGTTAAAAACCCTGAA
AAAAGCTGCTGTGATTGGTGCTGTAGCTTATGGAGGCTAMAAAGNCGGAC
AATTAASGAGCCGTTTTAGTAATTTCGGTCATAGTAATAATATGGGCTAT
GGATTTAATGACTGGAACAGATGGCGGCAACAAGATGGTTTCTTGTGTCG
CAACAATAACGATTGTGTATGGATAGACCCTTCTTTGGAATGTGATGACT
ATAAATTAGACTTCTCCCCCAGTAATTTGTGGTTTGGAGGTGATGTAGCC
AGCATCAAGGGAAAGTGTGAATGTAGAAATAATTTTCTATGGAATGACGA
CGATTTACATTGTCTTAAAAGGAGTGGTGGTTTCGGTGGCGGTGGTGGAG
GCGGGCTCGGAGGTCTCATCATTTCCATCATTGTCATTATGAGTATGGTC
TGCTGTTGCTGCGTGATTGGATGCGTCTTCATTGTAAAAATGTTCATAGG
AAGAGCTTCTGAAGGATAAGATAAGCAATGATATTGTGGATTCATGCAAC
ATATTATTATGCGAATATTCAATCGATTATATAAATTACTTTTCGATGGA
ACTTGTATGTATAACGTATATACTTGATGTGGACTGTGTTTTATCAGCTC
TGGTTCCTTATTATTCTCTATAATTATTAATTATACTCTACTTGGTATCA
AATACCTACATGCTTTTTCTTCTCTTTCTTACACTATCAGTGATCACTTT
GTTAAAGTAATATAGTCGTCAAATCGTTTTTATCACTTATTGTTTTCCTG
AGATCTTGCACTTTTTTATGAATGTTTTTTTTTTAACTTTTTTTTTAGAA
ATAAGAAATCAAATTACTGGAATCCCACATACCCTTCTGATGAATACTAT
AAATAAATCTTTTTATAAATGTAATGTTACTCATCGTTATCTATACGCTT
TTAATTTTATCAAAAGGTCCAATTTACTAATCAAATGCGCGATAAGCTTA
CTAACCACAAAAAGAAGAACACACTCACTACAGACTTAGACCCCAGTATA
AAAAGGAAGAATATTATCCTCTTAAATATTTATTATGTATTTTATCAAAA
TATAAGTTAACTAATATAATTCTAACTGCTTTTC
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