EMLSAG00000003172, EMLSAG00000003172-685938 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003172
Unique NameEMLSAG00000003172-685938
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003172 vs. L. salmonis peptides
Match: EMLSAP00000003172 (pep:novel supercontig:LSalAtl2s:LSalAtl2s176:344442:348782:-1 gene:EMLSAG00000003172 transcript:EMLSAT00000003172 description:"maker-LSalAtl2s176-augustus-gene-3.20")

HSP 1 Score: 2472.97 bits (6408), Expect = 0.000e+0
Identity = 1248/1248 (100.00%), Postives = 1248/1248 (100.00%), Query Frame = 0 
Query:    1 METEEPKDKSIKEDLTGKVIISKNESTKTRSTKLSDKKIQDVSEKSTQKSRSHHSDKSSILATTNLGRKSKASTHKSQKKSEVSSKSYKSSKKTQEGSSNGKSKTNGTKESTKKTIQISKTDLREKDLVSLKTKSTKLSETDSTLFSKKLQGLSEKSSQKSRSHXSDKSPILDNKSGSKSKPSTEKSPKKSEVSTESCKSPNKTQEESLSGKSKTNQTKASAEKSNDTTSDPKNFKSDNYKMKDQKSNPSHEKKSEDLSIDLNKFEVSSQDSISSIKTSESIFSVNTQDSIDYMTEKRSLNKSYQASYLYHEDEDLVKDFNDGSQNLSFLKIYSDKENTEISLIVASVKDSSSCFEENTTERLELLESVEISQIESFESHEDQAEGKNLKQINYNCDSNQESNPPSDHCLPLEKLDDIGNLTILSVETYTKHTKRTDYGNEQLKTELADPELKVKSYHDLNKSDSNSTSSSDCESSSNKSTSETTGSGSSSNKSTSEITKCESSSNKSDSETSDSENFKESCSNQSLKYKHSNNKLSRDQNKYESNRSVSDENDKLSPNKEESESSSSNMRSSKNKYFSKKSKPSNPKKAHSKTNAENSSNKESQSKPYLSIKNKKYYSKKSNKEDHSNIKTNISNDSNVSKLTGKKSKKPISQSNTITDEKLSNTSQKSVLFTKEDQPIEYWLQSTSSTKSKLNSSTISSSAILKEKSYLNKEISAFNSTKITLEPSPTNNLSIESFSNDDNKSKSPIDLVSKIEDSSQRYESSNFSKNRSQNNLLTSDTIFQNKVEMVSDFESPITPTSTLNSRNILSINDKPRVMSSEITPYKEESTSVELKGNKVDGERDSDAPNVPKDNSSFLPGQVLVNDMMATVKSALENRLAKCDIDDIMAKIFANDAKNKITDVPHAPSNQVVNHLVIEDSNVDKNNLEKVIIDENIKDGERHENSTTIIETHSQNIFTSQSKTIQNDELLKDEFVTIIKNPHENSSQTTSINQISSSGGLTTHQMDKSTPNQSLNLFENKHILSPNKVEYSNKLESSCSSNHLDETFSEENIPKDKVSETVTSLLAGGENLQLNTSNDYLLEDVVGNGSYRSKNNIVNADNSEEKLINRSDVASFGRTHIRLEDDPCRTDNNGIVVDYQDIRDEQPEKVIDIRLGNLRARHVYEIVVDISNDQLEVDVKDITFSKQCAQLASIIQKDDTNVCCVFYLESNHDENLERCLAINVKNLQTGEVKDNYSIIFHAKVIDQKR 1248
            METEEPKDKSIKEDLTGKVIISKNESTKTRSTKLSDKKIQDVSEKSTQKSRSHHSDKSSILATTNLGRKSKASTHKSQKKSEVSSKSYKSSKKTQEGSSNGKSKTNGTKESTKKTIQISKTDLREKDLVSLKTKSTKLSETDSTLFSKKLQGLSEKSSQKSRSHXSDKSPILDNKSGSKSKPSTEKSPKKSEVSTESCKSPNKTQEESLSGKSKTNQTKASAEKSNDTTSDPKNFKSDNYKMKDQKSNPSHEKKSEDLSIDLNKFEVSSQDSISSIKTSESIFSVNTQDSIDYMTEKRSLNKSYQASYLYHEDEDLVKDFNDGSQNLSFLKIYSDKENTEISLIVASVKDSSSCFEENTTERLELLESVEISQIESFESHEDQAEGKNLKQINYNCDSNQESNPPSDHCLPLEKLDDIGNLTILSVETYTKHTKRTDYGNEQLKTELADPELKVKSYHDLNKSDSNSTSSSDCESSSNKSTSETTGSGSSSNKSTSEITKCESSSNKSDSETSDSENFKESCSNQSLKYKHSNNKLSRDQNKYESNRSVSDENDKLSPNKEESESSSSNMRSSKNKYFSKKSKPSNPKKAHSKTNAENSSNKESQSKPYLSIKNKKYYSKKSNKEDHSNIKTNISNDSNVSKLTGKKSKKPISQSNTITDEKLSNTSQKSVLFTKEDQPIEYWLQSTSSTKSKLNSSTISSSAILKEKSYLNKEISAFNSTKITLEPSPTNNLSIESFSNDDNKSKSPIDLVSKIEDSSQRYESSNFSKNRSQNNLLTSDTIFQNKVEMVSDFESPITPTSTLNSRNILSINDKPRVMSSEITPYKEESTSVELKGNKVDGERDSDAPNVPKDNSSFLPGQVLVNDMMATVKSALENRLAKCDIDDIMAKIFANDAKNKITDVPHAPSNQVVNHLVIEDSNVDKNNLEKVIIDENIKDGERHENSTTIIETHSQNIFTSQSKTIQNDELLKDEFVTIIKNPHENSSQTTSINQISSSGGLTTHQMDKSTPNQSLNLFENKHILSPNKVEYSNKLESSCSSNHLDETFSEENIPKDKVSETVTSLLAGGENLQLNTSNDYLLEDVVGNGSYRSKNNIVNADNSEEKLINRSDVASFGRTHIRLEDDPCRTDNNGIVVDYQDIRDEQPEKVIDIRLGNLRARHVYEIVVDISNDQLEVDVKDITFSKQCAQLASIIQKDDTNVCCVFYLESNHDENLERCLAINVKNLQTGEVKDNYSIIFHAKVIDQKR
Sbjct:    1 METEEPKDKSIKEDLTGKVIISKNESTKTRSTKLSDKKIQDVSEKSTQKSRSHHSDKSSILATTNLGRKSKASTHKSQKKSEVSSKSYKSSKKTQEGSSNGKSKTNGTKESTKKTIQISKTDLREKDLVSLKTKSTKLSETDSTLFSKKLQGLSEKSSQKSRSHXSDKSPILDNKSGSKSKPSTEKSPKKSEVSTESCKSPNKTQEESLSGKSKTNQTKASAEKSNDTTSDPKNFKSDNYKMKDQKSNPSHEKKSEDLSIDLNKFEVSSQDSISSIKTSESIFSVNTQDSIDYMTEKRSLNKSYQASYLYHEDEDLVKDFNDGSQNLSFLKIYSDKENTEISLIVASVKDSSSCFEENTTERLELLESVEISQIESFESHEDQAEGKNLKQINYNCDSNQESNPPSDHCLPLEKLDDIGNLTILSVETYTKHTKRTDYGNEQLKTELADPELKVKSYHDLNKSDSNSTSSSDCESSSNKSTSETTGSGSSSNKSTSEITKCESSSNKSDSETSDSENFKESCSNQSLKYKHSNNKLSRDQNKYESNRSVSDENDKLSPNKEESESSSSNMRSSKNKYFSKKSKPSNPKKAHSKTNAENSSNKESQSKPYLSIKNKKYYSKKSNKEDHSNIKTNISNDSNVSKLTGKKSKKPISQSNTITDEKLSNTSQKSVLFTKEDQPIEYWLQSTSSTKSKLNSSTISSSAILKEKSYLNKEISAFNSTKITLEPSPTNNLSIESFSNDDNKSKSPIDLVSKIEDSSQRYESSNFSKNRSQNNLLTSDTIFQNKVEMVSDFESPITPTSTLNSRNILSINDKPRVMSSEITPYKEESTSVELKGNKVDGERDSDAPNVPKDNSSFLPGQVLVNDMMATVKSALENRLAKCDIDDIMAKIFANDAKNKITDVPHAPSNQVVNHLVIEDSNVDKNNLEKVIIDENIKDGERHENSTTIIETHSQNIFTSQSKTIQNDELLKDEFVTIIKNPHENSSQTTSINQISSSGGLTTHQMDKSTPNQSLNLFENKHILSPNKVEYSNKLESSCSSNHLDETFSEENIPKDKVSETVTSLLAGGENLQLNTSNDYLLEDVVGNGSYRSKNNIVNADNSEEKLINRSDVASFGRTHIRLEDDPCRTDNNGIVVDYQDIRDEQPEKVIDIRLGNLRARHVYEIVVDISNDQLEVDVKDITFSKQCAQLASIIQKDDTNVCCVFYLESNHDENLERCLAINVKNLQTGEVKDNYSIIFHAKVIDQKR 1248
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003172 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003172 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003172 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000031720.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s176:34444... [more]
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BLAST of EMLSAG00000003172 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003172 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003172 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003172 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s176supercontigLSalAtl2s176:344442..348782 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s176-augustus-gene-3.20
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003172 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003172EMLSAT00000003172-699019Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s176:344442..348782-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003172-685938 ID=EMLSAG00000003172-685938|Name=EMLSAG00000003172|organism=Lepeophtheirus salmonis|type=gene|length=4341bp|location=Sequence derived from alignment at LSalAtl2s176:344442..348782- (Lepeophtheirus salmonis)
ATGGAAACTGAAGAACCCAAGGATAAGTCGATTAAAGAAGATCTAACAGG
AAAAGTTATCATTAGTAAAAATGAAAGTACAAAAACGAGATCGACGAAGT
TATCTGATAAGAAGATTCAGGATGTATCTGAGAAAAGTACTCAAAAGAGT
AGATCACATCATTCTGACAAAAGTTCGATTTTAGCTACAACGAATTTAGG
AAGAAAATCCAAAGCAAGTACACATAAATCTCAGAAAAAAAGTGAAGTAA
GTTCAAAATCTTATAAATCATCAAAAAAGACACAAGAAGGATCTTCAAAT
GGGAAATCCAAAACCAATGGAACAAAAGAATCTACAAAAAAAACAATTCA
AATCTCAAAAACAGATCTAAGAGAAAAAGATTTAGTGAGTTTAAAAACGA
AATCGACTAAGTTATCTGAAACTGATTCAACATTATTTAGTAAGAAGCTT
CAGGGTTTATCTGAGAAAAGTTCTCAAAAGAGTAGGTCACATSATTCTGA
CAAAAGTCCAATTTTGGATAATAAATCAGGAAGTAAATCCAAACCAAGTA
CAGAAAAATCTCCCAAAAAAAGTGAAGTAAGTACGGAATCTTGTAAATCA
CCGAATAAGACGCAAGAAGAATCTTTAAGTGGAAAATCTAAAACCAACCA
AACAAAAGCATCTGCAGAAAAATCAAATGATACAACTTCTGATCCAAAGA
ACTTTAAGAGTGATAATTATAAAATGAAAGATCAAAAATCAAATCCATCT
CATGAGAAAAAGTCTGAAGATTTGTCGATCGATTTAAACAAATTTGAAGT
TTCTTCTCAAGACTCAATTTCTTCAATCAAAACTTCAGAATCGATTTTTT
CAGTTAACACTCAAGATTCTATTGATTATATGACTGAAAAGAGATCATTG
AACAAGTCTTATCAGGCATCTTATTTATACCATGAAGATGAAGACCTAGT
TAAAGATTTCAATGACGGATCGCAAAATTTATCTTTTCTGAAAATATATT
CTGACAAAGAAAACACAGAAATAAGCTTGATAGTTGCTTCCGTTAAAGAT
TCAAGTTCCTGCTTTGAGGAAAATACAACTGAAAGACTAGAACTATTAGA
GTCAGTTGAGATTTCTCAAATTGAATCTTTTGAATCACATGAAGATCAAG
CAGAAGGGAAAAATTTGAAGCAAATAAATTATAATTGTGATTCAAACCAA
GAATCTAATCCTCCTTCTGACCATTGTTTACCGTTAGAAAAATTGGATGA
TATAGGAAATTTGACTATTTTGTCAGTTGAAACATATACAAAACATACAA
AAAGAACTGACTATGGTAATGAACAATTAAAAACTGAACTTGCAGATCCA
GAATTAAAGGTAAAATCTTATCATGATTTAAATAAATCAGATTCAAACTC
TACATCATCATCAGATTGTGAATCATCGAGTAATAAATCAACTTCTGAAA
CAACTGGCAGTGGATCATCGAGTAATAAATCGACTTCAGAAATTACAAAA
TGTGAATCATCGAGTAATAAATCTGATTCTGAAACATCAGACTCTGAAAG
TAACTCTGCTTCCAAGATAAAAGTTTTGAATTATCAAGTAATCACTCTAA
TTTGTCTGATACTAAGGAATATAGTTCGGTTCATGAGTCAGGAGAGATGC
AGTCAAATTCTAAAACATCAAAATTATCTATTACAAAATTACATTTATCT
AATGAAGGAGATTCAAATAATTATTTAGAGGAAATGGATTCAGATAATAG
AMCATCCAATTCAAAAAAAAAAAATTGTCATCAAATAATGGAGGTAGTAC
TTCAGTGGATGAAAAATATGATTCAGCTATAAAAAAATTGAATACCACTT
CACATTTATCAACTACAAATTCATCAAAAGCTTTATCAACAGATTTTAAA
GAATCATGTTCAAATCAATCATTAAAGTATAAACATTCAAATAATAAATT
ATCACGGGACCAAAACAAATATGAATCAAATCGATCTGTAAGTGATGAAA
ATGATAAATTATCTCCTAATAAAGAGGAATCAGAATCATCCTCATCTAAT
ATGAGATCATCAAAAAATAAATACTTTTCAAAAAAATCCAAACCATCTAA
TCCTAAAAAAGCTCATTCAAAAACAAACGCCGAAAATTCATCAAACAAGG
AATCACAATCTAAACCTTATTTAAGTATAAAGAACAAGAAGTACTACAGT
AAAAAATCAAATAAAGAAGACCACTCCAACATAAAAACGAATATTTCAAA
TGATAGTAATGTTAGTAAATTAACAGGAAAAAAATCAAAAAAACCAATTA
GCCAAAGCAATACAATTACAGATGAAAAATTATCGAATACTTCTCAAAAG
TCAGTTTTATTCACAAAAGAGGATCAACCAATAGAGTACTGGCTCCAATC
GACCTCTAGTACAAAATCTAAACTAAATTCAAGTACAATTTCAAGCTCAG
CGATCTTAAAAGAAAAAAGCTATCTTAATAAAGAAATTTCTGCATTCAAT
TCTACAAAAATAACTCTTGAACCATCTCCCACTAATAACTTATCTATAGA
ATCATTTAGTAATGATGACAATAAATCCAAATCACCTATAGACTTAGTTT
CCAAAATTGAAGATTCCTCACAGCGATATGAATCTTCAAATTTTTCTAAG
AATAGATCACAAAACAATTTGCTTACTTCCGATACTATTTTTCAAAATAA
AGTGGAAATGGTTTCGGACTTTGAATCTCCTATAACACCAACTTCAACTC
TTAATTCCAGAAATATATTATCTATTAATGATAAGCCTAGAGTAATGTCT
AGTGAAATAACACCATATAAGGAAGAATCAACTAGTGTAGAATTAAAAGG
GAACAAAGTTGATGGGGAGAGAGACTCTGATGCTCCAAATGTACCTAAAG
ATAACAGTTCATTCTTGCCTGGCCAAGTTTTAGTAAATGATATGATGGCA
ACAGTTAAATCGGCTCTCGAAAATCGACTTGCAAAATGTGATATTGACGA
CATAATGGCTAAAATTTTTGCAAACGATGCAAAAAATAAAATAACAGATG
TTCCCCATGCTCCTTCTAATCAGGTTGTAAATCATCTTGTTATTGAAGAT
TCCAACGTGGACAAAAATAATTTGGAAAAAGTGATTATTGATGAAAATAT
CAAAGATGGCGAAAGACATGAAAATTCTACAACAATTATCGAAACACACA
GTCAAAATATTTTTACTAGTCAATCTAAAACCATTCAAAATGATGAACTA
TTGAAAGATGAATTTGTTACTATCATAAAAAATCCACATGAAAATAGTTC
ACAGACGACTTCCATCAATCAAATTTCATCCTCTGGTGGTTTGACTACAC
ACCAAATGGACAAGTCTACACCCAATCAATCTCTTAATTTATTTGAAAAC
AAGCATATTTTATCTCCAAACAAAGTTGAATATAGTAATAAATTAGAATC
AAGCTGTTCATCTAATCATTTAGACGAAACATTTAGTGAAGAAAATATAC
CAAAAGACAAGGTTTCTGAAACAGTGACTTCATTATTAGCTGGTGGTGAA
AATTTACAATTAAATACTTCTAATGATTATTTGCTTGAAGATGTTGTTGG
TAACGGAAGTTATAGGAGTAAAAATAATATAGTTAATGCCGATAATTCAG
AGGAAAAACTCATTAATAGAAGTGATGTTGCATCATTTGGAAGGACTCAT
ATTCGTTTGGAAGATGATCCGTGTAGAACTGATAATAATGGAATTGTGGT
TGACTACCAGGATATCCGTGACGAGCAACCAGAAAAAGTTATAGATATTC
GTTTAGGAAATCTAAGGGTAAATTTAAGTTTTTAGGTTAAATAATATTCC
AGCCTTATACATTATTATACATATATTAATATTCATGTATTTATAGGCGA
GGCATGTTTATGAAATTGTTGTGGATATTTCAAATGACCAATTAGAAGTT
GATGTTAAGGATATTACATTTAGCAAACAATGTGCACAGTTAAGTATAAA
AACTAATTTAACCTACAAAATGCATGCTCCTTGATGGTTCCGCTTTAAAC
CACTACCTTTTTAAATTATTTTCAAACTTAATTTTCTTTCCGACATAGAT
TAGCATCTATCATTCAGAAGGATGATACAAATGTATGCTGTGTTTTCTAT
TTGGAAAGCAATCATGACGAGAATCTTGAACGATGTCTAGCTATCAATGT
TAAAAACCTTCAAACAGGAGAAGTAAAAGATAATTACTCTATCATTTTTC
ATGCTAAAGTTATTGGTAATTACATGTTGATCACAATTGTGTTACAAAGT
TATTAATATGACCTTTTATTATCTTAGATCAAAAAAGATGA
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