EMLSAG00000003360, EMLSAG00000003360-686126 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003360
Unique NameEMLSAG00000003360-686126
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003360 vs. C. finmarchicus
Match: gi|592815488|gb|GAXK01139080.1| (TSA: Calanus finmarchicus comp194579_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 8.593e-6
Identity = 20/49 (40.82%), Postives = 29/49 (59.18%), Query Frame = 0 
Query:   33 LCEHIYYVMNKLDPGYSKNRGKILKDYIRALMNLAKIENNLGSINNVEF 81
            LCE    V+ K+DPGY   + + LKD   ++MNLA+ +   G I+  EF
Sbjct:  192 LCEESIEVLGKVDPGYPLWKAETLKDLSTSMMNLARTDFEAGEISRPEF 338
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BLAST of EMLSAG00000003360 vs. C. finmarchicus
Match: gi|592821147|gb|GAXK01133421.1| (TSA: Calanus finmarchicus comp692887_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 2.345e-5
Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 0 
Query:   32 ALCEHIYYVMNKLDPGYSKNRGKILKDYIRALMNLAK 68
            +LCE I  VM K+DPGYS+ +G++L++  RA M + K
Sbjct:  324 SLCEEIMMVMGKVDPGYSRRKGQLLEEMARAKMAILK 434
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BLAST of EMLSAG00000003360 vs. C. finmarchicus
Match: gi|592821148|gb|GAXK01133420.1| (TSA: Calanus finmarchicus comp692887_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 3.135e-5
Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 0 
Query:   32 ALCEHIYYVMNKLDPGYSKNRGKILKDYIRALMNLAK 68
            +LCE I  VM K+DPGYS+ +G++L++  RA M + K
Sbjct:  406 SLCEEIMMVMGKVDPGYSRRKGQLLEEMARAKMAILK 516
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BLAST of EMLSAG00000003360 vs. C. finmarchicus
Match: gi|592815485|gb|GAXK01139083.1| (TSA: Calanus finmarchicus comp194579_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 3.809e-5
Identity = 20/49 (40.82%), Postives = 29/49 (59.18%), Query Frame = 0 
Query:   33 LCEHIYYVMNKLDPGYSKNRGKILKDYIRALMNLAKIENNLGSINNVEF 81
            LCE    V+ K+DPGY   + + LKD   ++MNLA+ +   G I+  EF
Sbjct:  953 LCEESIEVLGKVDPGYPLWKAETLKDLSTSMMNLARTDFEAGEISRPEF 1099
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BLAST of EMLSAG00000003360 vs. C. finmarchicus
Match: gi|592866790|gb|GAXK01090772.1| (TSA: Calanus finmarchicus comp1521437_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 4.383e-5
Identity = 26/74 (35.14%), Postives = 38/74 (51.35%), Query Frame = 0 
Query:   33 LCEHIYYVMNKLDPGYSKNRGKILKDYIRALMNLAKIENNLGSINNVEFNKRKEMAKYFSKELIGCYKHEKFSS 106
            +CE I  VMN + PG SK RG +L +    ++ LA  + N   I    FN+  +  K F  E I C +H++  S
Sbjct: 1294 VCEDILGVMNIIYPGRSKYRGLLLHELADTVLALAGKQYNNEDITKENFNEELKNCKAFLHEGIDCLQHDRSGS 1515
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BLAST of EMLSAG00000003360 vs. C. finmarchicus
Match: gi|592920448|gb|GAXK01037927.1| (TSA: Calanus finmarchicus comp396316_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 2.036e-4
Identity = 19/51 (37.25%), Postives = 33/51 (64.71%), Query Frame = 0 
Query:   31 TALCEHIYYVMNKLDPGYSKNRGKILKDYIRALMNLAKIENNLGSINNVEF 81
            + LC+ +   +++LDPG ++NR K+L +  +A +NLAK++   G IN   F
Sbjct: 1932 SVLCDKLLAYVSRLDPGATQNRAKLLLEKNKADLNLAKLDCEAGLINRKVF 2084
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BLAST of EMLSAG00000003360 vs. C. finmarchicus
Match: gi|592920449|gb|GAXK01037926.1| (TSA: Calanus finmarchicus comp396316_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 2.038e-4
Identity = 19/51 (37.25%), Postives = 33/51 (64.71%), Query Frame = 0 
Query:   31 TALCEHIYYVMNKLDPGYSKNRGKILKDYIRALMNLAKIENNLGSINNVEF 81
            + LC+ +   +++LDPG ++NR K+L +  +A +NLAK++   G IN   F
Sbjct: 1947 SVLCDKLLAYVSRLDPGATQNRAKLLLEKNKADLNLAKLDCEAGLINRKVF 2099
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BLAST of EMLSAG00000003360 vs. C. finmarchicus
Match: gi|592874146|gb|GAXK01083416.1| (TSA: Calanus finmarchicus comp873904_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 1.309e-3
Identity = 21/66 (31.82%), Postives = 36/66 (54.55%), Query Frame = 0 
Query:   33 LCEHIYYVMNKLDPGYSKNRGKILKDYIRALMNLAKIENNLGSINNVEFNKRKEMAKYFSKELIGC 98
            LC+    +M++LDPGYS+  G +LK   +A + + KI+     I+  EF+ + E      +E+  C
Sbjct: 1192 LCKSYLSIMSRLDPGYSQWMGSVLKKMKKAQLEMLKIDLQDKKIDRNEFSSKSEEVWSSMREVDCC 1389
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BLAST of EMLSAG00000003360 vs. C. finmarchicus
Match: gi|592815208|gb|GAXK01139360.1| (TSA: Calanus finmarchicus comp1451234_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 36.5798 bits (83), Expect = 4.367e-3
Identity = 15/43 (34.88%), Postives = 25/43 (58.14%), Query Frame = 0 
Query:   23 DPSIWKEYTALCEHIYYVMNKLDPGYSKNRGKILKDYIRALMN 65
            +  I ++    CE +  VM+ ++PG S NRG++L +   ALM 
Sbjct:  233 EDDILEKKIMFCEELLTVMDIIEPGLSSNRGRLLYELADALMT 361
[Close]
BLAST of EMLSAG00000003360 vs. C. finmarchicus
Match: gi|592815209|gb|GAXK01139359.1| (TSA: Calanus finmarchicus comp1451234_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.5798 bits (83), Expect = 6.754e-3
Identity = 15/43 (34.88%), Postives = 25/43 (58.14%), Query Frame = 0 
Query:   23 DPSIWKEYTALCEHIYYVMNKLDPGYSKNRGKILKDYIRALMN 65
            +  I ++    CE +  VM+ ++PG S NRG++L +   ALM 
Sbjct:  233 EDDILEKKIMFCEELLTVMDIIEPGLSSNRGRLLYELADALMT 361
[Close]
BLAST of EMLSAG00000003360 vs. L. salmonis peptides
Match: EMLSAP00000003360 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1842:28659:30525:1 gene:EMLSAG00000003360 transcript:EMLSAT00000003360 description:"snap_masked-LSalAtl2s1842-processed-gene-0.3")

HSP 1 Score: 235.728 bits (600), Expect = 6.402e-81
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 
Query:    1 MSNSIPSLSSSIKNKNITINNIDPSIWKEYTALCEHIYYVMNKLDPGYSKNRGKILKDYIRALMNLAKIENNLGSINNVEFNKRKEMAKYFSKELIGCYKHEKFSSSKMKSNGNSFKL 118
            MSNSIPSLSSSIKNKNITINNIDPSIWKEYTALCEHIYYVMNKLDPGYSKNRGKILKDYIRALMNLAKIENNLGSINNVEFNKRKEMAKYFSKELIGCYKHEKFSSSKMKSNGNSFKL
Sbjct:    1 MSNSIPSLSSSIKNKNITINNIDPSIWKEYTALCEHIYYVMNKLDPGYSKNRGKILKDYIRALMNLAKIENNLGSINNVEFNKRKEMAKYFSKELIGCYKHEKFSSSKMKSNGNSFKL 118
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003360 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003360 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592815488|gb|GAXK01139080.1|8.593e-640.82TSA: Calanus finmarchicus comp194579_c0_seq3 trans... [more]
gi|592821147|gb|GAXK01133421.1|2.345e-548.65TSA: Calanus finmarchicus comp692887_c0_seq2 trans... [more]
gi|592821148|gb|GAXK01133420.1|3.135e-548.65TSA: Calanus finmarchicus comp692887_c0_seq1 trans... [more]
gi|592815485|gb|GAXK01139083.1|3.809e-540.82TSA: Calanus finmarchicus comp194579_c1_seq1 trans... [more]
gi|592866790|gb|GAXK01090772.1|4.383e-535.14TSA: Calanus finmarchicus comp1521437_c0_seq1 tran... [more]
gi|592920448|gb|GAXK01037927.1|2.036e-437.25TSA: Calanus finmarchicus comp396316_c0_seq2 trans... [more]
gi|592920449|gb|GAXK01037926.1|2.038e-437.25TSA: Calanus finmarchicus comp396316_c0_seq1 trans... [more]
gi|592874146|gb|GAXK01083416.1|1.309e-331.82TSA: Calanus finmarchicus comp873904_c1_seq3 trans... [more]
gi|592815208|gb|GAXK01139360.1|4.367e-334.88TSA: Calanus finmarchicus comp1451234_c0_seq2 tran... [more]
gi|592815209|gb|GAXK01139359.1|6.754e-334.88TSA: Calanus finmarchicus comp1451234_c0_seq1 tran... [more]

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BLAST of EMLSAG00000003360 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000033606.402e-81100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1842:2865... [more]
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BLAST of EMLSAG00000003360 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003360 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003360 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003360 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1842supercontigLSalAtl2s1842:28659..30525 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
NoteHypothetical protein
Descriptionsnap_masked-LSalAtl2s1842-processed-gene-0.3
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003360 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003360EMLSAT00000003360-699207Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1842:28659..30525+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003360-686126 ID=EMLSAG00000003360-686126|Name=EMLSAG00000003360|organism=Lepeophtheirus salmonis|type=gene|length=1867bp|location=Sequence derived from alignment at LSalAtl2s1842:28659..30525+ (Lepeophtheirus salmonis)
ATGGGTCTCCCAACCCGACGGGAATTACTCCTAGAACATTGGGGTTTTAC
TTGTAACTGCTCACGATGTAAGGATCCGAGTGAGTTGGGGACTTACACAT
CCGCTGTTAAGTGTAGTAGCTGTCAAAGTGGATATTTTCTACCTTCACTT
GACCTCCTGAAAGAATGGAGTTGCAATAGTTGCTCCAAAGGGTTGTCAAA
GATAAGGCTCCAGATGATTATTAATGAAAACACTGAGAAAATCCGGTTTT
TACAAAATAAATTAGGTATTGAAACTTATTTAATTATTTTATATCCCTTC
TAGGACTGCAACCAGGAGTCAAGGCCCAAAAATAGACGTACTAAAAGAAC
TTATTGTAGATCTAAAAGACAGCTTACACGAAAATCATTTTCTAATCCTT
CAAGTAAGTAGCAAATAGGAATGTATCAAGTTCTACACGATGTCAACTTT
TAAGAAAATGTATATGTCTAGAGTTGTTCATTATAAGTATTTAGACGGGT
GTAAAATTCTTGCAGTTGGCAATTCAGGCAGTTATATATATATATATATA
TTCCGTAGTGATTATTCCTACTCTTTAATTCTTGAGGAGATGTTATCTAA
GTATAATGTAACCAGGAGGGCGTGTGCTCACCAAAGAAAGAAAGTATTTC
TTATAACTGCCTGTAGTTAATCTAATCGAACAGCTAACTGACAGCTAACC
TGTTCTCCTTCGACACATTTTTTAATGTGTATCGTTTTATAATATCATTT
TTTTTAGTTTCTCTCATTATTCAGGGGCGTCTGCAGTATTATATTTTTTT
TTTTGGTGGGTTGGTTGGTTGGTTGGTTTTAGGATTTTTTCAAATCCAAA
AATCCATTTTTTTTAAACAAATTTGAAAATTTAATTTTTGGGGAAAAAAA
AATTTTTTTTACAAAACTTAAAAAAAAAAATAACCTATACTATACTATAG
CCCCTCCAGCACACCCGCTGCAGACACTCCTGTTATTACATACTGGCAGK
GTTTAGAATTTACAACTGTAAATAACTTTGTCCCTAAGGCTGTAAATCCT
AAAAAAGAAACTAGAGCTTACACTTAAAACTCCTAATTGTTACACTTGAA
CAATCAACTGGACACACTTTTGTGATTATATTTAATAAATATAATTTCTC
TCGTCAAGAATAATGATAACAGCTTTAAAAAAGTTAAAAACGCTGATTTG
GTTGTCATCAAAGAAAAACCTCATGACCTAAAAAAATTCTTAAGATTTAG
AATCCTGTATTTTTATTCGGGCTTTTGTACGGGTATTAATGTTTGATTTT
ATATACGCAGGTTGAATATATTCTGGTCGTCCTTATGTCCAATTCAATTC
CGAGCCTCAGCTCCTCGATTAAAAACAAGAACATCACAATCAATAACATC
GATCCTTCCATTTGGAAAGAATACACTGCCCTGTGTGAACATATTTATTA
TGTCATGAACAAACTTGATCCGGGGTATAGTAAAAATCGAGGGAAAATCC
TCAAAGACTACATACGGGCTCTAATGAATTTAGCAAAAATTGAAAACAAT
TTAGGATCCATAAATAATGTAGAGTTTAACAAACGAAAGGAAATGGCAAA
ATATTTTAGTAAGGAGCTGATTGGATGCTACAAACATGAAAAGTTTTCTT
CCTCCAAAATGAAATCAAATGGAAATAGTTTTAAACTATGAAAACTTACC
TATACAAGTATATATCAGAGCAAAAACGATTGATACAGGGGTACAAATGT
TATTAATTGAGTATTTATATATGTTTTAATTACTTTGTTAAATTTTTTGA
GGTATCTAAATAAAATAAAAAAAACTAATGAAAAGTGATGGTTAAGACTT
TTTCAAATCTGCAGTCG
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