EMLSAG00000003680, EMLSAG00000003680-686446 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003680
Unique NameEMLSAG00000003680-686446
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003680 vs. GO
Match: - (symbol:CEP290 "Uncharacterized protein" species:9823 "Sus scrofa" [GO:0000930 "gamma-tubulin complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA] [GO:0015031 "protein transport" evidence=IEA] [GO:0030814 "regulation of cAMP metabolic process" evidence=IEA] [GO:0032391 "photoreceptor connecting cilium" evidence=IEA] [GO:0036038 "TCTN-B9D complex" evidence=IEA] [GO:0042384 "cilium assembly" evidence=IEA] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=IEA] [GO:0060041 "retina development in camera-type eye" evidence=IEA] InterPro:IPR026201 GO:GO:0005829 GO:GO:0005634 GO:GO:0045893 GO:GO:0009986 GO:GO:0005813 GO:GO:0007163 GO:GO:0015031 GO:GO:0060041 GO:GO:0036038 GO:GO:0042384 GO:GO:0000930 GO:GO:0032391 PANTHER:PTHR18879 OrthoDB:EOG7RNK0B TreeFam:TF326911 GO:GO:0030814 OMA:VYILTKQ GeneTree:ENSGT00730000111039 EMBL:CU468671 Ensembl:ENSSSCT00000001011 Uniprot:F1SPZ0)

HSP 1 Score: 42.743 bits (99), Expect = 5.304e-4
Identity = 27/75 (36.00%), Postives = 48/75 (64.00%), Query Frame = 0 
Query:   53 KYKEMEFDLKRKSDLLNEVKVLLKQAATRERAQTSESEDLKKKVELLTQV-DPKSPSHILAKELRLSKLTIERLE 126
            K KE+E D+ +K+  L ++K L++QAA RE+     +EDL++++E+L  V +     H L +EL++ +L   +LE
Sbjct: 2280 KLKELETDVAKKTKSLTDLKQLVRQAAEREQQVKRYTEDLEQQIEMLKHVPEGAGTEHGLQRELQVLRLANSQLE 2354
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BLAST of EMLSAG00000003680 vs. GO
Match: - (symbol:CEP290 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0000930 "gamma-tubulin complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA] [GO:0015031 "protein transport" evidence=IEA] [GO:0030814 "regulation of cAMP metabolic process" evidence=IEA] [GO:0032391 "photoreceptor connecting cilium" evidence=IEA] [GO:0036038 "TCTN-B9D complex" evidence=IEA] [GO:0042384 "cilium assembly" evidence=IEA] [GO:0045893 "positive regulation of transcription, DNA-templated" evidence=IEA] [GO:0060041 "retina development in camera-type eye" evidence=IEA] InterPro:IPR026201 GO:GO:0005634 GO:GO:0005813 GO:GO:0060271 CTD:80184 KO:K16533 PANTHER:PTHR18879 OrthoDB:EOG7RNK0B TreeFam:TF326911 GeneTree:ENSGT00730000111039 EMBL:AADN03001149 RefSeq:XP_004937659.1 RefSeq:XP_004937660.1 RefSeq:XP_004937661.1 RefSeq:XP_004937662.1 UniGene:Gga.12011 Ensembl:ENSGALT00000018221 GeneID:417887 KEGG:gga:417887 Uniprot:E1C5Z3)

HSP 1 Score: 42.3578 bits (98), Expect = 6.802e-4
Identity = 27/74 (36.49%), Postives = 46/74 (62.16%), Query Frame = 0 
Query:   53 KYKEMEFDLKRKSDLLNEVKVLLKQAATRERAQTSESEDLKKKVELLTQV-DPKSPSHILAKELRLSKLTIERL 125
            K KE+E D+ +K+  + ++K LL++A  RE       +DLK+++ELL+ + +     H L +EL+L +LT  RL
Sbjct: 2268 KMKELEMDIAKKTQSITDLKRLLQEATEREHNADKNLQDLKEQIELLSHLPEGARTEHGLIRELQLLRLTNSRL 2341
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BLAST of EMLSAG00000003680 vs. C. finmarchicus
Match: gi|592935730|gb|GAXK01022823.1| (TSA: Calanus finmarchicus comp1637017_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 93.5893 bits (231), Expect = 3.192e-21
Identity = 57/121 (47.11%), Postives = 82/121 (67.77%), Query Frame = 0 
Query:    5 EEEVSKLQRLLKRTKSENGDSNKSDDEPPTNPVAHTENQRGMIELPREKYKEMEFDLKRKSDLLNEVKVLLKQAATRERAQTSESEDLKKKVELLTQVDPKSPSHILAKELRLSKLTIERL 125
            E ++++LQ +L+ TK+    SN   DE  ++            E+ R   ++ME DLKRKSDLL+EVKVLLKQAA RERAQ +E E LKK+++++ ++DPK+P   LAKELR  +LT++RL
Sbjct:  138 ERKINELQIILRETKTR---SNVGADEKTSDTD----------EVDR--VRQMEVDLKRKSDLLSEVKVLLKQAADRERAQEAEKESLKKQLKIIIEIDPKTPGEALAKELRQCRLTVDRL 455
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BLAST of EMLSAG00000003680 vs. L. salmonis peptides
Match: EMLSAP00000003680 (pep:novel supercontig:LSalAtl2s:LSalAtl2s19:587822:589042:1 gene:EMLSAG00000003680 transcript:EMLSAT00000003680 description:"snap_masked-LSalAtl2s19-processed-gene-6.6")

HSP 1 Score: 280.796 bits (717), Expect = 7.788e-98
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 
Query:    1 MSRLEEEVSKLQRLLKRTKSENGDSNKSDDEPPTNPVAHTENQRGMIELPREKYKEMEFDLKRKSDLLNEVKVLLKQAATRERAQTSESEDLKKKVELLTQVDPKSPSHILAKELRLSKLTIERLENVLLKIKARPKKNLLYNL 144
            MSRLEEEVSKLQRLLKRTKSENGDSNKSDDEPPTNPVAHTENQRGMIELPREKYKEMEFDLKRKSDLLNEVKVLLKQAATRERAQTSESEDLKKKVELLTQVDPKSPSHILAKELRLSKLTIERLENVLLKIKARPKKNLLYNL
Sbjct:    1 MSRLEEEVSKLQRLLKRTKSENGDSNKSDDEPPTNPVAHTENQRGMIELPREKYKEMEFDLKRKSDLLNEVKVLLKQAATRERAQTSESEDLKKKVELLTQVDPKSPSHILAKELRLSKLTIERLENVLLKIKARPKKNLLYNL 144
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003680 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 2
Match NameE-valueIdentityDescription
-5.304e-436.00symbol:CEP290 "Uncharacterized protein" species:98... [more]
-6.802e-436.49symbol:CEP290 "Uncharacterized protein" species:90... [more]
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BLAST of EMLSAG00000003680 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592935730|gb|GAXK01022823.1|3.192e-2147.11TSA: Calanus finmarchicus comp1637017_c0_seq1 tran... [more]
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BLAST of EMLSAG00000003680 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000036807.788e-98100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s19:587822... [more]
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BLAST of EMLSAG00000003680 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003680 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003680 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003680 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s19supercontigLSalAtl2s19:587822..589042 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s19-processed-gene-6.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003680 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003680EMLSAT00000003680-699527Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s19:587822..589042+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003680-686446 ID=EMLSAG00000003680-686446|Name=EMLSAG00000003680|organism=Lepeophtheirus salmonis|type=gene|length=1221bp|location=Sequence derived from alignment at LSalAtl2s19:587822..589042+ (Lepeophtheirus salmonis)
ATGTCTCGCCTCGAAGAAGAAGTTTCCAAACTCCAACGACTTTTAAAGAG
AACAAAGTCCGAAAATGGAGATTCTAATAAATCAGATGATGAACCTCCTA
CTAATCCAGTGGCCCACACTGAAAACCAGAGAGGCATGATTGAACTACCT
CGTGAAAAATATAAGGAGATGGAATTCGATTTGAAACGTAAATCTGACCT
TTTAAATGAAGTTAAAGTACTATTAAAACAAGCGGCAACACGGGAAAGAG
CTCAAACATCAGAGAGTGAGGACTTGAAAAAAAAAGTTGAGTTATTAACT
CAAGTGGATCCAAAATCTCCATCTCATATATTAGCTAAAGAGCTTCGACT
CTCAAAGTTGACCATTGAAAGACTTGAAAGTGAGAAAAAGGAATTGGAAC
ATCAAATAGAGGTTTTGACAAGAAAGATTTAGATAAAACTCATTTAGAGA
GCGTTTCCATGTTGTATGTGACGTCGCGTTATTGATGTTAGCTATTTTGA
AGGACTAAACGTCCTTTTTTTTATAACAATAAAAACAAATTTTTCATTCA
TATTGATCAAAATAGTAAACAAAAGTCCTTGTATTGTGATGACAAATGGT
ACAAAGAACTCAAACGTGTCTGTTTATCAAAAAATTATCCTTCTAATTCC
TAGTTTTATTTAATATCAGACTCTTCTTTTTACTCGGTTTTTCTAACTCC
ACATTGTGAGTGATCCTCTTAAATAATAAAAATGTGTAAAAAAATATGTT
AATCCATCCTATACAATCTTAATCCTTAAATAAATTCATTATTACAATGG
GAAGAATAGGATATTTTTATCTAATTACCCTACTTTTATCATCCCTAAGC
AATCCATAAAAAATAATTTTATAAATCCATTCATTTCATAGGGATTTTCA
CAGTACCTATCAATCTGATTTAATATATACCTATCAAGAAATAGGTATTT
GATGCAGTTTTTTGGACTTTTTGTATTCTTACAACCATTTGATTCATTTA
TTCCAAACTTTCCAACTGACATCCAATTTTGTATTTTTAATTATGGAAAG
ACCATCTCAAGACCAGGAGCGTACGCAGGGACTGGGCTGAAGGGGCTTGA
GTCTATCCCAAAATTTTAAAAGTAAAACAGGTAGAAATATCTCCATTTTT
CTTTTCTTTTAAAAGATGTATTGTTAAAAATTAAAGCTCGACCCAAAAAA
AATTTACTCTATAATCTTTAA
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