EMLSAG00000003684, EMLSAG00000003684-686450 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003684
Unique NameEMLSAG00000003684-686450
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003684 vs. C. finmarchicus
Match: gi|592881425|gb|GAXK01076476.1| (TSA: Calanus finmarchicus comp98055_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.481e+0
Identity = 17/41 (41.46%), Postives = 21/41 (51.22%), Query Frame = 0 
Query:    6 LLLSSYFQRSSGINILCKSEKDCPKPFACFFSLLTPTKCNP 46
            L  +   Q +  I+  CKSE DCP+  AC    LTP  C P
Sbjct:  144 LNATEAMQIAFDIDKPCKSESDCPE--ACMTGRLTPAVCGP 260
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BLAST of EMLSAG00000003684 vs. C. finmarchicus
Match: gi|592881426|gb|GAXK01076475.1| (TSA: Calanus finmarchicus comp98055_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.492e+0
Identity = 17/41 (41.46%), Postives = 21/41 (51.22%), Query Frame = 0 
Query:    6 LLLSSYFQRSSGINILCKSEKDCPKPFACFFSLLTPTKCNP 46
            L  +   Q +  I+  CKSE DCP+  AC    LTP  C P
Sbjct:  144 LNATEAMQIAFDIDKPCKSESDCPE--ACMTGRLTPAVCGP 260
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BLAST of EMLSAG00000003684 vs. C. finmarchicus
Match: gi|592881427|gb|GAXK01076474.1| (TSA: Calanus finmarchicus comp98055_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.620e+0
Identity = 17/41 (41.46%), Postives = 21/41 (51.22%), Query Frame = 0 
Query:    6 LLLSSYFQRSSGINILCKSEKDCPKPFACFFSLLTPTKCNP 46
            L  +   Q +  I+  CKSE DCP+  AC    LTP  C P
Sbjct:  144 LNATEAMQIAFDIDKPCKSESDCPE--ACMTGRLTPAVCGP 260
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BLAST of EMLSAG00000003684 vs. L. salmonis peptides
Match: EMLSAP00000003684 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1:1001708:1005062:-1 gene:EMLSAG00000003684 transcript:EMLSAT00000003684 description:"maker-LSalAtl2s1-augustus-gene-10.12")

HSP 1 Score: 308.916 bits (790), Expect = 1.069e-108
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 
Query:    1 MIIVYLLLSSYFQRSSGINILCKSEKDCPKPFACFFSLLTPTKCNPPKERNISCGKDIDGKTVPDHEVCIQDQVKTDNLKDRSLAVYRCYNSSCVNREFKNGRAKVCIPRMFSGGYGGCINGFSCGFFLLSQTWATCVNGDCDGFIRKRQ 150
            MIIVYLLLSSYFQRSSGINILCKSEKDCPKPFACFFSLLTPTKCNPPKERNISCGKDIDGKTVPDHEVCIQDQVKTDNLKDRSLAVYRCYNSSCVNREFKNGRAKVCIPRMFSGGYGGCINGFSCGFFLLSQTWATCVNGDCDGFIRKRQ
Sbjct:    1 MIIVYLLLSSYFQRSSGINILCKSEKDCPKPFACFFSLLTPTKCNPPKERNISCGKDIDGKTVPDHEVCIQDQVKTDNLKDRSLAVYRCYNSSCVNREFKNGRAKVCIPRMFSGGYGGCINGFSCGFFLLSQTWATCVNGDCDGFIRKRQ 150
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BLAST of EMLSAG00000003684 vs. L. salmonis peptides
Match: EMLSAP00000007799 (pep:novel supercontig:LSalAtl2s:LSalAtl2s457:449839:452961:-1 gene:EMLSAG00000007799 transcript:EMLSAT00000007799 description:"maker-LSalAtl2s457-augustus-gene-4.12")

HSP 1 Score: 124.405 bits (311), Expect = 3.917e-36
Identity = 73/162 (45.06%), Postives = 92/162 (56.79%), Query Frame = 0 
Query:   18 INILCKSEKDCPKPFACFFSLLTPTKCNPPKERNISCGKDIDGKTVPDHEVCIQDQVKTDNLKDRSLAVYRCY--------------------------------NSSCVNREFKNGRAKVCIPRMFSGGYGGCINGFSCGFFLLSQTWATCVNGDCDGFIR 147
            +   C+ EKDC K ++C FSL + +KC PP++RN+ CGK+ +G+TVPDHE+CIQDQVK DNLK   LAV RCY                                N +CVNREFKNG+AKVCIP      +G C N F CG+  L   WA C+   CDG I+
Sbjct:    4 VKATCRGEKDCLKTYSCSFSLFSSSKCIPPRQRNVFCGKNRNGQTVPDHEICIQDQVKDDNLKGPGLAVNRCYKTKGSFKCQNAYLNYCVTDYTMKQPIKNICPPNFNCVNREFKNGKAKVCIPSKNFQRFGKCSNDFDCGYSTLLNNWALCLGSKCDGPIQ 165
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BLAST of EMLSAG00000003684 vs. L. salmonis peptides
Match: EMLSAP00000005968 (pep:novel supercontig:LSalAtl2s:LSalAtl2s321:89695:114791:1 gene:EMLSAG00000005968 transcript:EMLSAT00000005968 description:"maker-LSalAtl2s321-augustus-gene-1.27")

HSP 1 Score: 72.4034 bits (176), Expect = 1.880e-16
Identity = 47/187 (25.13%), Postives = 74/187 (39.57%), Query Frame = 0 
Query:    3 IVYLLLSSYFQRSSGINILCKSEKDCPKPFACFFSLLTPTKCNPPKERNISC-GKDIDGKTVPDHEVCIQDQVKTDNLKDRSLAVYRCYNSS--------------------------------------CVNREFKNGRAKVCIPRMFSGGYG---GCINGFSCGFFLLSQTWATCVNGDCDGFIR 147
             +YLL  +     S I + C +EKDCP   +CF+++ +   C  PK   + C G +  G   P+H++C+ + +K +   D  L+  RCY +                                       C   EFK+G+  +C P   +   G    C   F CG+ +L   WA C  G C   I+
Sbjct:   12 FLYLLFVTCVASQSQI-LECNTEKDCPAYNSCFYNVFSGYYCVGPKYSEVDCHGINSQGIVFPNHQICVDEDMKEEGFSDWRLSNKRCYKTKIDGSEAYRCGGAYKNACTPQYDTQGNFVKDDQCPYKFRCEAAEFKDGKKNICNPHNLATDAGTSESCTTAFDCGYSVLQGIWAPCYGGQCSNVIQ 197
[Close]
BLAST of EMLSAG00000003684 vs. L. salmonis peptides
Match: EMLSAP00000007800 (pep:novel supercontig:LSalAtl2s:LSalAtl2s457:455515:463209:1 gene:EMLSAG00000007800 transcript:EMLSAT00000007800 description:"maker-LSalAtl2s457-augustus-gene-4.10")

HSP 1 Score: 60.077 bits (144), Expect = 4.615e-12
Identity = 45/174 (25.86%), Postives = 67/174 (38.51%), Query Frame = 0 
Query:    6 LLLSSYFQRSSGINIL--CKSEKDCPKPFACFFSLLTPTKCNPPKERNISCG-KDIDGKTVPDHEVCIQDQVKTDNLKDRSLAV---------YRCYNS-------------------------SCVNREFKNGRAKVCIPRMFSGGYGGCINGFSCGFFLLSQTWATCVNGDC 142
            + L  Y   +  +  L  C  ++DCPK   C FS    ++C      +  CG K  DG   P+H VCI+   KT++L    ++V         YRC N+                          C  + FK+G   VC+P+      G C     C F  L+  W  C++  C
Sbjct:   48 VFLDMYNNNTQALKRLPPCSVDEDCPKYHICIFSEFGKSECKIAGLTDFDCGVKGYDGNVFPNHTVCIEQDSKTNHLTHPDISVFHCVETGKGYRCANAFGNTCSDMYDAHGRILMRKTCPSNFRCSLKRFKDGYENVCLPQYVEHD-GNCNKDSDCAFSTLTFRWIECIDHQC 220
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003684 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003684 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592881425|gb|GAXK01076476.1|2.481e+041.46TSA: Calanus finmarchicus comp98055_c0_seq3 transc... [more]
gi|592881426|gb|GAXK01076475.1|2.492e+041.46TSA: Calanus finmarchicus comp98055_c0_seq2 transc... [more]
gi|592881427|gb|GAXK01076474.1|2.620e+041.46TSA: Calanus finmarchicus comp98055_c0_seq1 transc... [more]
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BLAST of EMLSAG00000003684 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000036841.069e-108100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1:1001708... [more]
EMLSAP000000077993.917e-3645.06pep:novel supercontig:LSalAtl2s:LSalAtl2s457:44983... [more]
EMLSAP000000059681.880e-1625.13pep:novel supercontig:LSalAtl2s:LSalAtl2s321:89695... [more]
EMLSAP000000078004.615e-1225.86pep:novel supercontig:LSalAtl2s:LSalAtl2s457:45551... [more]
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BLAST of EMLSAG00000003684 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003684 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003684 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003684 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1supercontigLSalAtl2s1:1001708..1005062 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1-augustus-gene-10.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003684 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003684EMLSAT00000003684-699531Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1:1001708..1005062-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003684-686450 ID=EMLSAG00000003684-686450|Name=EMLSAG00000003684|organism=Lepeophtheirus salmonis|type=gene|length=3355bp|location=Sequence derived from alignment at LSalAtl2s1:1001708..1005062- (Lepeophtheirus salmonis)
ATGATAATTGTGTATCTGTTGTTGTCAAGTTACTTTCAAAGAAGTTCTGG
AATTAATATTCTATGTAAAAGTGAAAAAGATTGCCCAAAGCCATTCGCAT
GTTTTTTCTCTCTTTTGACTCCAACTAAATGTAACCCACCCAAGGAAAGA
AATATATCCTGCGGTAAGGATATCGATGGAAAAACAGTTCCGGATCATGA
AGTTTGTATACAGGATCAAGTCAAAACCGTAAGTATTCAGATGCTAATTC
GATTAGGAATTTGATGAGTTTGGCAATGATGTAAATATTTTCATGTTCTG
TTTTGCAGGACAACTTGAAGGACCGGAGTCTCGCCGTGTATCGCTGTTAC
AATAGCAGGTAAAAGTGTGATAACCGAAATATTTAATTACTTACTTAATT
GATGAAGCTACTCGCAATATTTAATACAGTACCGTAATCAGGGTTTAGTT
ATTGGATAGGGTTATTTGAAGCGCTTATATGTACTAGGTGTATCAAAACT
ATTTCTCGATTAGGAACTCCGAACTTAATCCAGAACTATGTACTTAATGA
CTCTAAAGTTGTTACGCCTTTTTTATTTGTTTACTTCTTTACATACAGTA
TTAGTTTATTACAGCTCAATACAATCTCCGTTAGCCTTAATGATGACCTC
CAACCAGGGCCTGAAGGCACAGTATGACTTCTTGACCAATCCTTTGTCCA
TATTGTCCCAAATATAATTGACAGAAGCTTTCAGGGCTTTAGTTTTGGGT
TAGTGTTTGTCACAGCCCTTGCTCTCCAAATGCAGACATAAGGCAAAGTC
CAACGGGTTCACGTCTGGTGAGTATGGTGGCCACATTGTCTTATCCTAAA
AAGACTTGTTCTTCTGAAGAAAGGGCTGGGTCACTTTGGTGGTAAGTGCG
TACGCTACATCTTGTTGGACATAACCAATTAACGCATACCGCTTAACATG
CATACAACGAGATTACAAGGAATACAAATAACCAAAGTTGGATTTTTTAT
ACATATATGCATTTTCATCTGATATTAATTTGACGAAAATCAAATGTGAT
AATTTGCAATTACTATTGGACAAAATCTATGATCGTGACAAAAAAAAAGA
AGATAGGGAACTTCATTTGGCAAAGTTGAAGGTAGCTGCAGCTACAATTA
AGTTGAATGAAATAAATGGGATATTTACTTCCTTTTTTATCCGGTCATTT
CAATACTATAAAATTTAAATAATCGGAACTCGACCAATATTTATTTAGCA
TGCTTTTTAATTACAAGCTTCTATAATAAGCAATATGCAAAAGTTTTAAG
TCTAGGTATCAAGTCAGATACTAACAACACTATACAAAATTATACAATTC
CATTATATGAATATATAGGCAAAATATGAACAAACTCATCAACAACTCAA
AAAAATGTATTAACTCAATTTATATTTTTTTATAATTTATTATATTAATA
TAAAAACCGCGATATCAAATAATTCCAAACACCGCATTATGCAAAATCTG
CGTTATTTGAAACCACTTTATGCTGGGACCCTCCGTATAAATAAATTTTA
AAAAAAACGTATTATATAAAAGTAACTACCAGAGGGTGCCGGGGTTGAAG
TGCTGAATAGAGAGGATTAAAAACAAAAATTGAAGGTCAATCATAGAAGA
AAAGAGACAGAGAGAAGGGATGGAGCATAAGACAAAGGGAGAAGAGGAGA
AGGGAAAGACTGAGAGAAGGAGATAGATATAGAAAAGTTTCTGACCTCAA
CGTGACGATAGGTACACTCGTAAATAAAAGATAGTCGCATCTATATAGCA
TCTGTTGATAGTTACTCACCAAGTTACTAAATGATCCATTAAAATCTGAA
CACATGTGTGTCTGAGCTCTCTTAATCATGAATGTAGTTGCATTTATTAG
TAAATATGGCTTYCRGGCGRCGGSAGAASCCCCCGACACACGCTGCAGTT
GTAGTCTTCTTTCATGGCGTCCAAGTTCTAGCATACAGTGGCTTCGGCGT
TTAGATCAAAGACACTGCAGGCCTTCTCCTTAACATGCATCCAAAACGTG
TAGTCAAGGGATTGGTATCAGGGCTGTAGCGGGGGAGGGTGGCAAAAGTG
TCAAAAAAGAGCGCAAAAGAATAACTAAAGAGAGTTTTTCGACGGAGGAG
ATGGGTTTCTTTCATTGTTGGTGTCAAAAGTGGCGTCTCCAACCACACAA
GGCTCTTTCCGCCCACTTTTTTGACAGCTCTTTGGTCAGTCTGGTTCTTT
TAGTCTCTGTTTATTTGTCTCAAATCAATACAATCTCAAATCTCGAAAAG
TTTTTCAAATATCTAAAGAAAATGTTTTCTCTGCGAAATACACTTCTCAA
ATAGATGATTTAATTATTGTTACTATTGAAATAATATGTTTTTGAAAGAT
TTATCAAATAATAAACACCAATGATTTAAGAACATCTAATGTTTAGAGTA
TTAAATACTGTTTTAAATAATTAATTATTATCAAATGGGTTTGATTTTCA
TGTGCATTTACTTATATACAAAATAATAATCACATCACACTCTAACTCAA
AATTAATGAACCTTTGTCTTCTATATTATTATATTTTCAGAGGGTCCTAC
AAATGCCAAAACGCATACTCAAATTATTGTGTTACAGATTATTCTATGGA
AGAACCCATCAAAGACGTATGTCCACCATATTTTGAGTAAAGGCAACATA
TCCAGTACCTACATGGCCGTCGCTAGGGCTTTTCTAGAGGGGATGTTAGA
TATTTTTTCCTTCAAATCGACTTATTTATCAGATAAGAAAAAACAAGAGT
GTTTAAAAAAAAAAAATTAGTAACACTTATGAATTAGATTCCATTTTATT
TTTAGAAAATTATGCTTTATTTTATTTTTAAAATGACCTTTTCTAATAAA
TTGTGTACATATTTATTTTTATTTATAAAATAGTCTAATCTATAAAATAA
TGGTTAATTATATTTTTCCATTTTTATGTTATAAGACCATTTTTTTCGAC
TCAAATATGAATGACATTTTTTAAGGATATATTTTTCATTTTTTACAATA
ATTACATTAAAAATCCTAATTTTCTGAATAAGGTCCTTGTTTTTGAGTCA
TATAATCCATGGAGGCGACGGCCTTGAGTACATAATATAAATAATAAACA
TGCAATTTGATAATTATGTGTCCATTTCAGCTGTGTAAATCGTGAATTCA
AGAATGGAAGGGCAAAAGTGTGCATTCCACGTATGTTTTCTGGAGGTTAT
GGAGGATGTATTAATGGTTTTAGTTGTGGATTCTTCCTTTTATCTCAGAC
TTGGGCCACATGTGTAAATGGTGATTGTGATGGATTCATTCGAAAAAGAC
AGTAA
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