EMLSAG00000003897, EMLSAG00000003897-686663 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003897 vs. C. finmarchicus
Match: gi|592822349|gb|GAXK01132219.1| (TSA: Calanus finmarchicus comp26824_c1_seq1 transcribed RNA sequence) HSP 1 Score: 55.4546 bits (132), Expect = 1.663e-9 Identity = 34/99 (34.34%), Postives = 51/99 (51.52%), Query Frame = 0
Query: 38 INYLG-TNYLLPDGCPXPACNRNSEDCKRTVDMVRALYSHCLQSQDGQHIGCITDRLIPGQKSSTITIPIYATLCSAMCYEPDPEKIIKIHRCPYPGYR 135
+ YLG +LL D CP A + ++ Y C +++ H C TDRL+ G K +T+P++ +CSA+C+ E + KIH CPY G R
Sbjct: 150 VKYLGGITFLLKDRCPVGASDFEIDN-----------YKQCAENEI-LHTQCTTDRLLTGDK---LTVPLFTDICSAVCW---GENVKKIHDCPYNGRR 392
BLAST of EMLSAG00000003897 vs. C. finmarchicus
Match: gi|592816283|gb|GAXK01138285.1| (TSA: Calanus finmarchicus comp102989_c1_seq1 transcribed RNA sequence) HSP 1 Score: 55.0694 bits (131), Expect = 2.401e-9 Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 0
Query: 35 KSIINYLGTNYLLPDGCPXPACNRNSEDCKRTVD--MVRALYSHCLQSQDGQHIGCITDRLIPGQKSSTITIPIYATLCSAMCYEPDPEKIIKIHRCPYPGYRRHD 138
+S++ YLG ++LLPDGCP VD M++ Y CL S G C TDR G+ ++TIP ++ +CSA+C+ PE+ +++ CPY G D
Sbjct: 171 RSVVRYLGDSFLLPDGCP--------------VDDPMIQRFYKLCLASH-GADTLCSTDRFPNGR---SLTIPQFSNICSAICHNM-PEE--EMNLCPYKGKVMGD 425
BLAST of EMLSAG00000003897 vs. C. finmarchicus
Match: gi|592927390|gb|GAXK01031076.1| (TSA: Calanus finmarchicus comp559624_c0_seq1 transcribed RNA sequence) HSP 1 Score: 51.2174 bits (121), Expect = 2.632e-8 Identity = 35/99 (35.35%), Postives = 48/99 (48.48%), Query Frame = 0
Query: 38 INYLG-TNYLLPDGCPXPACNRNSEDCKRTVDMVRALYSHCLQSQDGQHIGCITDRLIPGQKSSTITIPIYATLCSAMCYEPDPEKIIKIHRCPYPGYR 135
+ YLG +LL D CP A D + Y C +++ H C TDRL G K +T+P + +CSA+C+ D + KIH CPY G R
Sbjct: 28 VKYLGGITFLLKDRCPEYA-----------SDFEISNYKQCAENEI-LHTQCTTDRLKTGDK---LTVPTFTDICSAVCWGED---VRKIHDCPYNGRR 270
BLAST of EMLSAG00000003897 vs. C. finmarchicus
Match: gi|592777352|gb|GAXK01177216.1| (TSA: Calanus finmarchicus comp140880_c1_seq1 transcribed RNA sequence) HSP 1 Score: 41.2022 bits (95), Expect = 4.317e-4 Identity = 30/82 (36.59%), Postives = 42/82 (51.22%), Query Frame = 0
Query: 35 KSIINYLGTNYLLPDGCPXPACNRNSEDCKRTVDMVRALYSHCLQSQDGQHIGCITDRLIPGQKSSTITIPIYATLCSAMCY 116
+ I++Y + YL+ GCP ED V+ Y+ CL S + C++DRL PG K IT P Y +CSAMC+
Sbjct: 245 RVIVSYQNSEYLVRTGCPI-------ED-----KFVQRFYNLCLASYQHNTL-CMSDRL-PGGKD--ITFPQYTDICSAMCH 442 HSP 2 Score: 33.113 bits (74), Expect = 2.456e-1 Identity = 23/91 (25.27%), Postives = 40/91 (43.96%), Query Frame = 0
Query: 35 KSIINYLGTNYLLPDGCPX--PACNRNSEDCKRTVDMVRALYSHCLQSQDGQHIGCITDRLIPGQKSSTITIPIYATLCSAMCYEPDPEKI 123
K +++YLG +YL+ GCP P R + C + H G C+T R + +T+P ++ +C A+C+ E +
Sbjct: 527 KVVVDYLGEDYLVTGGCPATDPTVLRWHKFCT---------FLH------GDSTLCVTQRF----GKNLLTVPRFSNVCDALCHTTFTETM 742
BLAST of EMLSAG00000003897 vs. C. finmarchicus
Match: gi|592777407|gb|GAXK01177161.1| (TSA: Calanus finmarchicus comp140829_c1_seq1 transcribed RNA sequence) HSP 1 Score: 38.5058 bits (88), Expect = 2.392e-3 Identity = 26/103 (25.24%), Postives = 54/103 (52.43%), Query Frame = 0
Query: 35 KSIINYLGTNYLLPDGCPXPACNRNSEDCKRTVDMVRALYSHCLQSQDGQHIG--CITDRLIPGQKSSTITIPIYATLCSAMCYEPDPEKIIKIHRCPYPGYR 135
++I++Y G+ +L+ GCP + S++ D V Y C+++ + + C T ++ G+ T+ +P+++ +CSA+C+ I ++ CPY R
Sbjct: 159 ETIMSYGGSMFLVKQGCPYRP-HYYSDNNVLDQDTVEQ-YKDCVKTATPRQLSLQCSTHQVRYGRTLQTMIVPVFSDICSALCHH--HTDIHRLRACPYQARR 455
BLAST of EMLSAG00000003897 vs. C. finmarchicus
Match: gi|592791632|gb|GAXK01162936.1| (TSA: Calanus finmarchicus comp2717243_c0_seq2 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 4.712e-1 Identity = 19/65 (29.23%), Postives = 28/65 (43.08%), Query Frame = 0
Query: 44 NYLLPDGCPXPACNRNSEDCKRTVDMVRALYSHCLQSQD----GQHIGCITDRLIPGQKSSTITI 104
NY+L D C P ++ + M + C +QD GQHI + R + GQK + I
Sbjct: 255 NYILEDACVTPDAGTEADKYQEEWRMWQ--LRACNITQDMTNRGQHISMVPVRWVEGQKEDMLAI 443
BLAST of EMLSAG00000003897 vs. L. salmonis peptides
Match: EMLSAP00000003897 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:524762:546864:-1 gene:EMLSAG00000003897 transcript:EMLSAT00000003897 description:"maker-LSalAtl2s210-augustus-gene-5.19") HSP 1 Score: 297.745 bits (761), Expect = 2.303e-104 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
Query: 1 MNLSSSIILCFLSSFLFLTLVKSQRNQRDQRTIAKSIINYLGTNYLLPDGCPXPACNRNSEDCKRTVDMVRALYSHCLQSQDGQHIGCITDRLIPGQKSSTITIPIYATLCSAMCYEPDPEKIIKIHRCPYPGYRRHDPHLNLLF 145
MNLSSSIILCFLSSFLFLTLVKSQRNQRDQRTIAKSIINYLGTNYLLPDGCPXPACNRNSEDCKRTVDMVRALYSHCLQSQDGQHIGCITDRLIPGQKSSTITIPIYATLCSAMCYEPDPEKIIKIHRCPYPGYRRHDPHLNLLF
Sbjct: 1 MNLSSSIILCFLSSFLFLTLVKSQRNQRDQRTIAKSIINYLGTNYLLPDGCPXPACNRNSEDCKRTVDMVRALYSHCLQSQDGQHIGCITDRLIPGQKSSTITIPIYATLCSAMCYEPDPEKIIKIHRCPYPGYRRHDPHLNLLF 145
BLAST of EMLSAG00000003897 vs. L. salmonis peptides
Match: EMLSAP00000006223 (pep:novel supercontig:LSalAtl2s:LSalAtl2s33:44486:45408:-1 gene:EMLSAG00000006223 transcript:EMLSAT00000006223 description:"snap_masked-LSalAtl2s33-processed-gene-0.16") HSP 1 Score: 82.4185 bits (202), Expect = 2.743e-20 Identity = 38/105 (36.19%), Postives = 61/105 (58.10%), Query Frame = 0
Query: 35 KSIINYLGTNYLLPDGCPXPACNRNSEDCKRTVDMVRALYSHCLQSQDGQHIGCITDRLIPGQKSSTITIPIYATLCSAMCY-EPDPEKIIKIHRCPYPGYRRHD 138
KS++ YLGT++++ DGC P CN C + + HC + + + C+TD L + ITIP++A +CSA CY + DP+ +IH CPY G++++D
Sbjct: 39 KSVVKYLGTDFVMYDGCVLPKCNPAVASCGKFKKETAIEFYHCEGTNNSGVVACLTDIL---PNDTNITIPVFANICSAQCYLKDDPKTFQRIHPCPYSGFKQND 140
BLAST of EMLSAG00000003897 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold618_size123335-snap-gene-0.25 (protein:Tk08351 transcript:maker-scaffold618_size123335-snap-gene-0.25-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 107.842 bits (268), Expect = 1.199e-30 Identity = 48/112 (42.86%), Postives = 75/112 (66.96%), Query Frame = 0
Query: 35 KSIINYLGTNYLLPDGCPXPACNRNSEDCKRTVDMVRALYSHCLQSQDGQHIGCITDRLIPGQKSSTITIPIYATLCSAMCYEPDPEKIIKIHRCPYPGYRRH-DPHLNLLF 145
+++I YLGT+++LPDGCP PAC+ C R + + Y++C++ +D +H+GC+TD ++P ++ TITIP+YA CSA CYE D + K+ CP+ G + DP+L LF
Sbjct: 70 RTVITYLGTDFILPDGCPLPACDPEDRICNRKSNEMEQRYNNCIRGEDAKHLGCVTD-VLPTKR--TITIPVYANFCSAFCYEKDIGAVNKLEHCPHAGAKHEVDPNLFSLF 178 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003897 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003897 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 6
BLAST of EMLSAG00000003897 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000003897 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003897 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003897 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003897 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s210:524762..546864- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003897-686663 ID=EMLSAG00000003897-686663|Name=EMLSAG00000003897|organism=Lepeophtheirus salmonis|type=gene|length=22103bp|location=Sequence derived from alignment at LSalAtl2s210:524762..546864- (Lepeophtheirus salmonis)back to top Add to Basket
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