EMLSAG00000003900, EMLSAG00000003900-686666 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592789078|gb|GAXK01165490.1| (TSA: Calanus finmarchicus comp1403382_c0_seq2 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 8.522e-1 Identity = 20/85 (23.53%), Postives = 32/85 (37.65%), Query Frame = 0 Query: 159 VRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKH 243 ++ G +QC +C K + + N ++H TH ID V SC IC + + S L++H H Sbjct: 123 IQKNGPLWQCKMCGKTAKQKPNMKNHIETH------------------------IDGVSHSCHICNKTFSTRNS--LQVHITDYH 299
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592912225|gb|GAXK01046150.1| (TSA: Calanus finmarchicus comp198685_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 1.019e+0 Identity = 23/100 (23.00%), Postives = 42/100 (42.00%), Query Frame = 0 Query: 144 ISVCEEIQNYFESISVR----LGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKD----SIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTAL 235 CE+ ++ S+ V LGG +QC +C ++F+ +H TH + D + K + L +I ++ + C C++ K K L Sbjct: 217 CGFCEKKFSHLASMKVHEKVHLGGKPHQCDMCEAKFSNKFDLFAHEKTHSALRPHKCDECTETFKTAESLRFHKLIHVESQPNICRFCKKCFKNKNQLDL 516
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592848058|gb|GAXK01109486.1| (TSA: Calanus finmarchicus comp951898_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 1.047e+0 Identity = 28/112 (25.00%), Postives = 47/112 (41.96%), Query Frame = 0 Query: 133 KDYELQHNDEWISVCEEIQNYFESISVRLGG------ASYQCLLCAKNLRDRFNARSHYVTHYFQTAD-------------RKDSIKRFDDLVERNIIFIDKVKSSCMICRR 225 KD +LQH + IQ+ F+ + L G + C+ C KN +FN H T + Q +D RKD +++ + I I ++K C +C++ Sbjct: 70 KDNKLQH--------QRIQHNFDVKKITLPGINDDEHSKPNCVYCKKNFNTKFNLNRHLETVHLQNSDVIFECKTCKKIFRRKDKLQKHEK-----IHLIVELKRICEVCKK 366
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592931523|gb|GAXK01027030.1| (TSA: Calanus finmarchicus comp19118_c1_seq3 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 1.359e+0 Identity = 26/98 (26.53%), Postives = 44/98 (44.90%), Query Frame = 0 Query: 110 YYDEEASYDTSGPSEDTLPPDRNK---DYELQHNDEWIS-----------VCEEIQNYFESIS----VRLGGASYQCLLCAKNLRDRFNARSHYVTHY 189 Y +E +++S S +T PD NK DY + N E ++ +C++I + IS L ++C C K + R N RSH +++ Sbjct: 697 YEEETPQFESSQGSLNTSRPDGNKELLDYSINQNMEKVTSQDGRTLWQCNICKKIHHLKHVISDHVEHHLSDVEFECPYCHKKKKSRSNLRSHISSYH 990
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592787191|gb|GAXK01167377.1| (TSA: Calanus finmarchicus comp1193_c26_seq751 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 1.525e+0 Identity = 17/60 (28.33%), Postives = 31/60 (51.67%), Query Frame = 0 Query: 134 DYELQHND---EWISVCEEIQNYFESISVRL--GGASYQCLLCAKNLRDRFNARSHYVTH 188 DYE++H D S +E+++ + + G +QC +C K+ +D+ N + H TH Sbjct: 100 DYEVEHVDYPYSESSFSQEVKDVSRDFNEMMTKNGEVWQCNICGKSAKDKSNLKRHVGTH 279
BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Match: EMLSAP00000003900 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:650772:653232:-1 gene:EMLSAG00000003900 transcript:EMLSAT00000003900 description:"maker-LSalAtl2s210-augustus-gene-5.20") HSP 1 Score: 511.531 bits (1316), Expect = 0.000e+0 Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0 Query: 1 SSTSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKHCNIF 247 SSTSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKHCNIF Sbjct: 1 SSTSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKHCNIF 247
BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Match: EMLSAP00000003901 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:674069:678772:-1 gene:EMLSAG00000003901 transcript:EMLSAT00000003901 description:"maker-LSalAtl2s210-snap-gene-5.24") HSP 1 Score: 112.079 bits (279), Expect = 3.364e-30 Identity = 71/132 (53.79%), Postives = 87/132 (65.91%), Query Frame = 0 Query: 2 STSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNK 133 S +G S YS SSLVISKET+ P + PPQ++Q I IG+DDDEIEDVT +KEE KY+ ++DE+ +NQS+ELEN+LH+VKYIEDH DFESES EE DT SE+T PD NK Sbjct: 48 SITGLCISAYSLKTHSSLVISKETSPNPSKF-------PPQKEQDIPIGEDDDEIEDVTIVKEEDKYVFESNNDEVGLDNQSQELENELHDVKYIEDHIDFESES------EELCCDTLRDSENTSHPDLNK 166
BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Match: EMLSAP00000000188 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:128672:130553:-1 gene:EMLSAG00000000188 transcript:EMLSAT00000000188 description:"maker-LSalAtl2s1029-augustus-gene-1.38") HSP 1 Score: 70.8626 bits (172), Expect = 3.744e-15 Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 0 Query: 45 QPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEAS---YDTS---GPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSH 184 QP TI +DDEI+D+TP+ E+ KY++ S +P+ + +E+++ LH+ ++IED ++ES SG+ YDEE S +D S GPS ++P D NK+ + N E + R YQC+ C K + N + H Sbjct: 36 QP-TITIEDDEIQDITPITEDKKYVVNNS--MTIPD-KPQEVDDSLHKEEFIEDQNEYESASGDFCYDEEESITDHDLSGAPGPSGTSIPLDENKELNEKLNAE-----------INRLIKRTPDGVYQCISCKKTTKRLQNLQFH 166
BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Match: EMLSAP00000006061 (pep:novel supercontig:LSalAtl2s:LSalAtl2s328:254086:278509:-1 gene:EMLSAG00000006061 transcript:EMLSAT00000006061 description:"maker-LSalAtl2s328-augustus-gene-2.18") HSP 1 Score: 54.299 bits (129), Expect = 5.859e-9 Identity = 53/206 (25.73%), Postives = 80/206 (38.83%), Query Frame = 0 Query: 51 DDDDEIEDVTPLKEEAKYIIGRS-----DDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASY------DTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKHCN 245 +DDDEIED+TP+K E K G + D + P++ ++ HE + E++ + SESGE+ Y+E S GPS D NK + + + +R + + C C K R R+H + QT D + C +C RV K + S L +H KH N Sbjct: 53 EDDDEIEDITPVKAEPKDTTGNTMVVTPDVSLGPDDLGDDAYT--HEDENYEEYAQYGSESGEMSYNEGGSLMDPGLAXVPGPSGAPTAADGNKG---------AGAIIALDSAINRLIIR-SASGFTCKKCGKQSAQRTCLRNHIEAKHIQT----DGFR-------------------CPVCTRVFKTRNS--LXVHTSTKHTN 221 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003900 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 4
BLAST of EMLSAG00000003900 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003900 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003900 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003900 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s210:650772..653232- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003900-686666 ID=EMLSAG00000003900-686666|Name=EMLSAG00000003900|organism=Lepeophtheirus salmonis|type=gene|length=2461bp|location=Sequence derived from alignment at LSalAtl2s210:650772..653232- (Lepeophtheirus salmonis)back to top Add to Basket
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