EMLSAG00000003900, EMLSAG00000003900-686666 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003900
Unique NameEMLSAG00000003900-686666
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592789078|gb|GAXK01165490.1| (TSA: Calanus finmarchicus comp1403382_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 8.522e-1
Identity = 20/85 (23.53%), Postives = 32/85 (37.65%), Query Frame = 0
Query:  159 VRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKH 243
            ++  G  +QC +C K  + + N ++H  TH                        ID V  SC IC +    + S  L++H    H
Sbjct:  123 IQKNGPLWQCKMCGKTAKQKPNMKNHIETH------------------------IDGVSHSCHICNKTFSTRNS--LQVHITDYH 299          
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592912225|gb|GAXK01046150.1| (TSA: Calanus finmarchicus comp198685_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.019e+0
Identity = 23/100 (23.00%), Postives = 42/100 (42.00%), Query Frame = 0
Query:  144 ISVCEEIQNYFESISVR----LGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKD----SIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTAL 235
               CE+  ++  S+ V     LGG  +QC +C     ++F+  +H  TH      + D    + K  + L    +I ++   + C  C++  K K    L
Sbjct:  217 CGFCEKKFSHLASMKVHEKVHLGGKPHQCDMCEAKFSNKFDLFAHEKTHSALRPHKCDECTETFKTAESLRFHKLIHVESQPNICRFCKKCFKNKNQLDL 516          
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592848058|gb|GAXK01109486.1| (TSA: Calanus finmarchicus comp951898_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 1.047e+0
Identity = 28/112 (25.00%), Postives = 47/112 (41.96%), Query Frame = 0
Query:  133 KDYELQHNDEWISVCEEIQNYFESISVRLGG------ASYQCLLCAKNLRDRFNARSHYVTHYFQTAD-------------RKDSIKRFDDLVERNIIFIDKVKSSCMICRR 225
            KD +LQH        + IQ+ F+   + L G      +   C+ C KN   +FN   H  T + Q +D             RKD +++ +      I  I ++K  C +C++
Sbjct:   70 KDNKLQH--------QRIQHNFDVKKITLPGINDDEHSKPNCVYCKKNFNTKFNLNRHLETVHLQNSDVIFECKTCKKIFRRKDKLQKHEK-----IHLIVELKRICEVCKK 366          
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592931523|gb|GAXK01027030.1| (TSA: Calanus finmarchicus comp19118_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.359e+0
Identity = 26/98 (26.53%), Postives = 44/98 (44.90%), Query Frame = 0
Query:  110 YYDEEASYDTSGPSEDTLPPDRNK---DYELQHNDEWIS-----------VCEEIQNYFESIS----VRLGGASYQCLLCAKNLRDRFNARSHYVTHY 189
            Y +E   +++S  S +T  PD NK   DY +  N E ++           +C++I +    IS      L    ++C  C K  + R N RSH  +++
Sbjct:  697 YEEETPQFESSQGSLNTSRPDGNKELLDYSINQNMEKVTSQDGRTLWQCNICKKIHHLKHVISDHVEHHLSDVEFECPYCHKKKKSRSNLRSHISSYH 990          
BLAST of EMLSAG00000003900 vs. C. finmarchicus
Match: gi|592787191|gb|GAXK01167377.1| (TSA: Calanus finmarchicus comp1193_c26_seq751 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.525e+0
Identity = 17/60 (28.33%), Postives = 31/60 (51.67%), Query Frame = 0
Query:  134 DYELQHND---EWISVCEEIQNYFESISVRL--GGASYQCLLCAKNLRDRFNARSHYVTH 188
            DYE++H D      S  +E+++     +  +   G  +QC +C K+ +D+ N + H  TH
Sbjct:  100 DYEVEHVDYPYSESSFSQEVKDVSRDFNEMMTKNGEVWQCNICGKSAKDKSNLKRHVGTH 279          
BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Match: EMLSAP00000003900 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:650772:653232:-1 gene:EMLSAG00000003900 transcript:EMLSAT00000003900 description:"maker-LSalAtl2s210-augustus-gene-5.20")

HSP 1 Score: 511.531 bits (1316), Expect = 0.000e+0
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0
Query:    1 SSTSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKHCNIF 247
            SSTSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKHCNIF
Sbjct:    1 SSTSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKHCNIF 247          
BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Match: EMLSAP00000003901 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:674069:678772:-1 gene:EMLSAG00000003901 transcript:EMLSAT00000003901 description:"maker-LSalAtl2s210-snap-gene-5.24")

HSP 1 Score: 112.079 bits (279), Expect = 3.364e-30
Identity = 71/132 (53.79%), Postives = 87/132 (65.91%), Query Frame = 0
Query:    2 STSGQNTSDYSSTIPSSLVISKETNLYPPPYVIPSKRPPPQQQQPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASYDTSGPSEDTLPPDRNK 133
            S +G   S YS    SSLVISKET+  P  +       PPQ++Q I IG+DDDEIEDVT +KEE KY+   ++DE+  +NQS+ELEN+LH+VKYIEDH DFESES      EE   DT   SE+T  PD NK
Sbjct:   48 SITGLCISAYSLKTHSSLVISKETSPNPSKF-------PPQKEQDIPIGEDDDEIEDVTIVKEEDKYVFESNNDEVGLDNQSQELENELHDVKYIEDHIDFESES------EELCCDTLRDSENTSHPDLNK 166          
BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Match: EMLSAP00000000188 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:128672:130553:-1 gene:EMLSAG00000000188 transcript:EMLSAT00000000188 description:"maker-LSalAtl2s1029-augustus-gene-1.38")

HSP 1 Score: 70.8626 bits (172), Expect = 3.744e-15
Identity = 50/146 (34.25%), Postives = 79/146 (54.11%), Query Frame = 0
Query:   45 QPITIGDDDDEIEDVTPLKEEAKYIIGRSDDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEAS---YDTS---GPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSH 184
            QP TI  +DDEI+D+TP+ E+ KY++  S    +P+ + +E+++ LH+ ++IED  ++ES SG+  YDEE S   +D S   GPS  ++P D NK+   + N E              +  R     YQC+ C K  +   N + H
Sbjct:   36 QP-TITIEDDEIQDITPITEDKKYVVNNS--MTIPD-KPQEVDDSLHKEEFIEDQNEYESASGDFCYDEEESITDHDLSGAPGPSGTSIPLDENKELNEKLNAE-----------INRLIKRTPDGVYQCISCKKTTKRLQNLQFH 166          
BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Match: EMLSAP00000006061 (pep:novel supercontig:LSalAtl2s:LSalAtl2s328:254086:278509:-1 gene:EMLSAG00000006061 transcript:EMLSAT00000006061 description:"maker-LSalAtl2s328-augustus-gene-2.18")

HSP 1 Score: 54.299 bits (129), Expect = 5.859e-9
Identity = 53/206 (25.73%), Postives = 80/206 (38.83%), Query Frame = 0
Query:   51 DDDDEIEDVTPLKEEAKYIIGRS-----DDEIVPNNQSEELENKLHEVKYIEDHKDFESESGELYYDEEASY------DTSGPSEDTLPPDRNKDYELQHNDEWISVCEEIQNYFESISVRLGGASYQCLLCAKNLRDRFNARSHYVTHYFQTADRKDSIKRFDDLVERNIIFIDKVKSSCMICRRVLKIKGSTALRMHFIMKHCN 245
            +DDDEIED+TP+K E K   G +     D  + P++  ++     HE +  E++  + SESGE+ Y+E  S          GPS      D NK                + +    + +R   + + C  C K    R   R+H    + QT    D  +                   C +C RV K + S  L +H   KH N
Sbjct:   53 EDDDEIEDITPVKAEPKDTTGNTMVVTPDVSLGPDDLGDDAYT--HEDENYEEYAQYGSESGEMSYNEGGSLMDPGLAXVPGPSGAPTAADGNKG---------AGAIIALDSAINRLIIR-SASGFTCKKCGKQSAQRTCLRNHIEAKHIQT----DGFR-------------------CPVCTRVFKTRNS--LXVHTSTKHTN 221          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003900 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003900 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592789078|gb|GAXK01165490.1|8.522e-123.53TSA: Calanus finmarchicus comp1403382_c0_seq2 tran... [more]
gi|592912225|gb|GAXK01046150.1|1.019e+023.00TSA: Calanus finmarchicus comp198685_c0_seq1 trans... [more]
gi|592848058|gb|GAXK01109486.1|1.047e+025.00TSA: Calanus finmarchicus comp951898_c0_seq1 trans... [more]
gi|592931523|gb|GAXK01027030.1|1.359e+026.53TSA: Calanus finmarchicus comp19118_c1_seq3 transc... [more]
gi|592787191|gb|GAXK01167377.1|1.525e+028.33TSA: Calanus finmarchicus comp1193_c26_seq751 tran... [more]

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BLAST of EMLSAG00000003900 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000039000.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s210:65077... [more]
EMLSAP000000039013.364e-3053.79pep:novel supercontig:LSalAtl2s:LSalAtl2s210:67406... [more]
EMLSAP000000001883.744e-1534.25pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:1286... [more]
EMLSAP000000060615.859e-925.73pep:novel supercontig:LSalAtl2s:LSalAtl2s328:25408... [more]
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BLAST of EMLSAG00000003900 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003900 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003900 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003900 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s210supercontigLSalAtl2s210:650772..653232 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s210-augustus-gene-5.20
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003900 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003900EMLSAT00000003900-699747Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s210:650772..653232-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003900-686666 ID=EMLSAG00000003900-686666|Name=EMLSAG00000003900|organism=Lepeophtheirus salmonis|type=gene|length=2461bp|location=Sequence derived from alignment at LSalAtl2s210:650772..653232- (Lepeophtheirus salmonis)
TCCAGTACCAGTGGACAGAACACCTCCGATTATTCTTCAACCATTCCTTC TTCCCTTGTCATTTCCAAAGAAACTAATTTGTATCCTCCTCCTTATGTCA TACCATCCAAGCGACCTCCTCCTCAGCAACAGCAGCCCATCACCATTGGA GATGACGATGATGAGATTGAAGATGTGACTCCACTCAAAGAAGAAGCCAA ATACATTATTGGGAGGAGCGATGATGAAATCGTGCCGAATAATCAGTCAG AAGAGTTAGAGAATAAACTTCACGAGGTTAAATATATTGAGGATCATAAA GATTTTGAATCTGAATCTGGAGAGCTTTACTATGATGAAGAAGCCTCCTA TGATACTTCGGGACCCTCTGAGGACACATTACCCCCTGATCGAAATAAAG GTAAGGACATATTATATTGATGATATATTTTTCAGACTACTTTGAATAGG TTATATAGTGAGCCTCACTTTTTGAATTATTTGTAATATATTATTATTAG ATATAGTCACAACACTATTAAATAAACTTTCTAATTAAGTTTATTTCTGT AATATCTCTAGTTATATCCCTAAATACTTTTATCATAAAAGACAACTACT TTACATCTTTGTCAGTGTCGTTGATAATTATATATAAGACGATGGCTAAA TGACAGTATAGCAATCAAAAAATCATAAGGAAAAAAGCAAAGGCCTTATT AATAACAACGGATACATAAATTCCGAAAGTTAAAATATACACTTGTCCTA GATGAGGATAATAGTTGTTGGGGAAAATAACAAACACATGCTATTATAAA TATATAATAATAGATTTATTATGTGTAGCTCTGGATAGATACAATGAATA TAAATAAGTAATAATCATATTTATTGTAATTTAATTAATAAGTTTCGATA TAACTGATACTACAAGTATTATACCTGGTCCCTAATTTCTTGGAACTGCT CTTTTTTATTTATTAATCATTATTCGTCCACGAAACTTATCCATAAAACC CCATCCTCAGAAAGTTTGTAAATGTATTTATAATATTGTGTGCTTGATTC TAAGCAAATAGTATTTGTATATTTTTAAAATACCAACGAAGAGTTTTACG ACAATAAAATTAATATTAAATTTAATACGATCTAAGTTGAGGTTTATGAA CAGTGAATGGATAATGACGAGTGTTGAGACTCAGTCCAGCACGGATTTTT TTTTCGGGTCAGTCTTTAGTAATTTTTTCTTGACGGATTTTTCGGTGCAG ACTGTGGTCTCAGACCGTGGACCGATTTTTTTCGGTCTTACTTTGTTGAC TGATTTTGATTTGGTCTCACTTTGTAGACCGATTTTTTTTGGTCTCAATT TATGGACCAATTTTTTTTTCCCAAAAAAATCTCAAAAGTACACGATAAGT TCAAGGACAAATACTGTATACATATAAGAGACTGCGGGATCAAAATTAAT CCCGAGCTATCTCTGTTTAAACTTTGTATTACGTCATTGTATTTGAAAAA AACAATGATGGCATGTTATAAACAATTTATCTGTAAAATCGGTCTAGACC GATTTTTTCCTTCGGAACGATCTAAACCGAATTTTTATATGAGGCCGGTC CAGACCGAGCTTCTTTGTTGGACCGAACTAATTCGGTCCAACAAAAATAT AACGGTCTCAGACTGGGATAGGATTTCCAGACCGAAATCCAACACTAATA ATGAGGATAATTAATGTATAGAATAGATTATGCACTTAGCATTAAGTAAT ATATATATATATATATATATATATGTATGATATTAAGTAACTAATAACAA GAAAATGAATAGGACGTAGTTCTTGTAAAATATACACGCTCGTTTTTTAG TGATCAAATCCTGTAGTAAAAAATATCATTATTATTAGTTAAATGAATGT ATTCAGAACATTACAAAATCAAATAACCTAGTCATTTGAAAATCCCCGAA GCGGAAATTTTTGACTCTTTTGCAACTCTAGATTTAAAACAATAGATTGG CGACGTTTCTTTCTTTTAATTATTTAGTTCACTCGCCATATTTGTTTAAT TTTAAACACCAATCTAAAAATGTAAATCTTAAATTTAAATTTGTTTTTTT CTCCAAATACTTTACAGACTATGAACTTCAACATAACGACGAATGGATCT CCGTTTGCGAAGAGATACAAAATTACTTTGAATCTATAAGTGTCCGTTTG GGAGGAGCCAGTTACCAATGCTTGCTTTGTGCAAAGAATCTTCGAGACCG TTTTAACGCCCGGAGCCATTATGTCACGCATTACTTTCAAACTGCGGATA GGAAGGATTCCATTAAAAGATTTGATGACCTCGTCGAAAGAAATATTATT TTTATTGATAAAGTCAAAAGTTCCTGTATGATTTGTAGAAGAGTGCTAAA AATCAAGGGTTCAACTGCACTGAGAATGCATTTCATTATGAAACATTGTA ATATATTCTGA
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