EMLSAG00000003904, EMLSAG00000003904-686670 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003904
Unique NameEMLSAG00000003904-686670
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003904 vs. C. finmarchicus
Match: gi|592803175|gb|GAXK01151393.1| (TSA: Calanus finmarchicus comp6876096_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 8.605e-2
Identity = 15/41 (36.59%), Postives = 23/41 (56.10%), Query Frame = 0 
Query:   19 PAKLDIDYKPFEDVYIVNGTDP-IAHLLNWTFERKQKEKKA 58
            PAK  I    F +++I+N   P +AHLL  T  R  +E ++
Sbjct:  103 PAKSSISATAFLNIFIINSAYPRVAHLLESTTGRNLRELRS 225
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BLAST of EMLSAG00000003904 vs. L. salmonis peptides
Match: EMLSAP00000003904 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2110:17074:17924:-1 gene:EMLSAG00000003904 transcript:EMLSAT00000003904 description:"maker-LSalAtl2s2110-snap-gene-0.2")

HSP 1 Score: 196.438 bits (498), Expect = 3.891e-66
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 
Query:    1 MKLIGLSDELIKQYEVGSPAKLDIDYKPFEDVYIVNGTDPIAHLLNWTFERKQKEKKAEQIFGQNFFFRTTFRNVFFNRFYFLNKGDYPALHKVI 95
            MKLIGLSDELIKQYEVGSPAKLDIDYKPFEDVYIVNGTDPIAHLLNWTFERKQKEKKAEQIFGQNFFFRTTFRNVFFNRFYFLNKGDYPALHKVI
Sbjct:    1 MKLIGLSDELIKQYEVGSPAKLDIDYKPFEDVYIVNGTDPIAHLLNWTFERKQKEKKAEQIFGQNFFFRTTFRNVFFNRFYFLNKGDYPALHKVI 95
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BLAST of EMLSAG00000003904 vs. L. salmonis peptides
Match: EMLSAP00000011118 (pep:novel supercontig:LSalAtl2s:LSalAtl2s7539:315:1161:-1 gene:EMLSAG00000011118 transcript:EMLSAT00000011118 description:"maker-LSalAtl2s7539-augustus-gene-0.0")

HSP 1 Score: 66.6254 bits (161), Expect = 1.640e-15
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0 
Query:    1 MKLIGLSDELIKQYEVGSPAKLDIDYKPFEDVYIVNGTDPIAHLLNWTFERKQKEKKA 58
            M+ +GLSDELIK+YE G+P KLDI Y P ++ YI NGTD I   + WT +   K KK+
Sbjct:   47 MRXLGLSDELIKKYEEGNPMKLDIVYNPXKNDYIFNGTDSIXXXIXWTIQXNSKRKKS 104
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BLAST of EMLSAG00000003904 vs. L. salmonis peptides
Match: EMLSAP00000007695 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4487:6203:6885:-1 gene:EMLSAG00000007695 transcript:EMLSAT00000007695 description:"maker-LSalAtl2s4487-augustus-gene-0.1")

HSP 1 Score: 43.8986 bits (102), Expect = 5.192e-7
Identity = 22/74 (29.73%), Postives = 40/74 (54.05%), Query Frame = 0 
Query:    1 MKLIGLSDELIKQYEVGSPAKLDIDYKPFEDVYIVNGTDPIAHLLNWTFERKQKEKKAEQIFGQNFFFRTTFRN 74
            M  +G+S+++IK Y  G  A L+I Y P    Y + G DP +    +   + Q++ +A  IFG+ ++  + + N
Sbjct:   46 MTELGISEDVIKVYIQGILATLNIFYTPTAFTYXITGNDPRSKTFGFLIRKNQEQLEAVDIFGKTYWSLSNYTN 119
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BLAST of EMLSAG00000003904 vs. L. salmonis peptides
Match: EMLSAP00000009326 (pep:novel supercontig:LSalAtl2s:LSalAtl2s595:823055:823268:-1 gene:EMLSAG00000009326 transcript:EMLSAT00000009326 description:"maker-LSalAtl2s595-augustus-gene-7.6")

HSP 1 Score: 42.3578 bits (98), Expect = 5.820e-7
Identity = 22/45 (48.89%), Postives = 27/45 (60.00%), Query Frame = 0 
Query:   10 LIKQYEVGSPAKLDIDYKPFEDVYIVNGTDPIAHLLNWTFERKQK 54
            +IK YE G  A LDI Y P +  Y V G DP+ + +  TFE KQK
Sbjct:    1 MIKAYEDGVHAVLDIGYIPTDAQYNVTGMDPMGNEIQLTFELKQK 45
[Close]
BLAST of EMLSAG00000003904 vs. L. salmonis peptides
Match: EMLSAP00000002072 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1386:21225:21705:-1 gene:EMLSAG00000002072 transcript:EMLSAT00000002072 description:"maker-LSalAtl2s1386-snap-gene-0.5")

HSP 1 Score: 42.743 bits (99), Expect = 8.051e-7
Identity = 23/82 (28.05%), Postives = 42/82 (51.22%), Query Frame = 0 
Query:    1 MKLIGLSDELIKQYEVGSPAKLDIDYKPFEDVYIVNGTDPIAHLLNWTFERKQKEKKAEQIFGQNFFFRTTFRNVFFNRFYF 82
            M  +G+S+++IK Y  G  A L+I Y P    Y++ G DP      +   + Q++ +   IF Q +++ + + N    RF +
Sbjct:    1 MTELGISEDVIKVYIQGILATLNIFYTPTPFTYVITGKDPRNKTFGFPIRKYQQQFEPVDIFEQTYWYMSYYTNNTLQRFIY 82
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003904 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003904 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592803175|gb|GAXK01151393.1|8.605e-236.59TSA: Calanus finmarchicus comp6876096_c0_seq1 tran... [more]
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BLAST of EMLSAG00000003904 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000039043.891e-66100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s2110:1707... [more]
EMLSAP000000111181.640e-1553.45pep:novel supercontig:LSalAtl2s:LSalAtl2s7539:315:... [more]
EMLSAP000000076955.192e-729.73pep:novel supercontig:LSalAtl2s:LSalAtl2s4487:6203... [more]
EMLSAP000000093265.820e-748.89pep:novel supercontig:LSalAtl2s:LSalAtl2s595:82305... [more]
EMLSAP000000020728.051e-728.05pep:novel supercontig:LSalAtl2s:LSalAtl2s1386:2122... [more]
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BLAST of EMLSAG00000003904 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003904 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003904 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003904 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s2110supercontigLSalAtl2s2110:17074..17924 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s2110-snap-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003904 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003904EMLSAT00000003904-699751Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s2110:17074..17924-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003904-686670 ID=EMLSAG00000003904-686670|Name=EMLSAG00000003904|organism=Lepeophtheirus salmonis|type=gene|length=851bp|location=Sequence derived from alignment at LSalAtl2s2110:17074..17924- (Lepeophtheirus salmonis)
TGTACCTAAATTCAGGGGTAGTTGGTGTGAAGATAAGGCTGAGAGACGTA
ATGTTTTGGATTTAATGAAACTAATTGGTGTGGTTATTGATCATTTCAAT
TATTGTTGTATATTTATCTAAATTTATTTATAGGACKATCGGATGAGCTA
ATCAAACAGTATGAAGTTGGCAGCCCTGCNGTAATGTTTTGGATMTAATG
AAACTAATTGGTGTGGTTATTGATCATTTCAATTATTGTTGTATATTTAT
CTAAATTTATTTATAGGACTATCGGATGAGCTAATCAAACAGTATGAAGT
TGGCAGCCCTGCAAAATTGGATATAGATTATAAACCCTTTGAGGATGTTT
ATATCGTCAATGGAACAGGTGAAATATACTCTCTTTTAATCCAGAMAATG
AAGTAGTTAAATTTTATATTAAATATCTTTTAAGATCCTATTGCACATCT
TTTAAATTGGACTTTTGAAAGGAAGCAAAAAGAAAAAAAAGCTGAACAAA
TCTTTGGACAAAATTTTTTTTTCAGAACAACATTCAGAAATGTATTTTTT
AATAGATTTTATTTCCTCAATAAGGGAGATGTTAAAAATTATTTTAAAGT
TCAATTTAATAAAATTGAAAAATCTGGCCWCTTGAAAATGAGATGGATTC
CAGCAATACAAAAAAAAARCAGGGCATTCACCTTATTTAAACTTTGTCCA
CCCACTTCTTAAAATACATTGTASATACGTGGCTATAAATTTTGTCAAAG
TTCTTCACATAAATTGTTTACAAAAATAAAGCTAATTTAAAATATGTAAT
TAATCCTTACTTTTGTTTTATTAAAAGTACCCAGCATTACACAAAGTTAT
T
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