EMLSAG00000003946, EMLSAG00000003946-686712 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003946
Unique NameEMLSAG00000003946-686712
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000003946 vs. C. finmarchicus
Match: gi|592763589|gb|GAXK01190979.1| (TSA: Calanus finmarchicus comp335144_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 98.9821 bits (245), Expect = 7.427e-23
Identity = 70/222 (31.53%), Postives = 116/222 (52.25%), Query Frame = 0
Query:    1 MINWLNEMNNRDVVVLYFGAIDFEESTYPAL-EKLLKVPLINE--RLNKDYKTNKKWPTLGKAIGEKNNIFIFMR------TNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELC----HNQGDLLKV---AAFGAGFKVWT-CLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNY--LGKNGKVPIDVIHNMNHLN 203
            M  WL++ +  +VV L FG ID+ E T P+L E L++   + +  R+NK +K    WPTLG+A+     +FIF+R      T N ++  +  +  P H    + L++ +  IT++YK G +G+DC   + +  + C      + D LK+   + FG G  + T C+ + AR CN  +K A++ C  +    NF+ +D+PNY  L +   V +    NM   N
Sbjct:  169 MKKWLDQ-HPSEVVALNFGNIDWPEETIPSLMETLIEEFSLQDGVRINKAFKATGSWPTLGEAVKSNERLFIFLRDSIGAVTENELEIVKEIKVKPGHDVASKNLTEFEASITTSYKAGDVGSDCSFVLRSNADACKSENQTETDFLKLSFFSKFGKGGAIGTECVHKMARKCNQWVKQAVDQCNYRNFKPNFLLVDYPNYQALAEQNIVQLCQAVNMERAN 831          
BLAST of EMLSAG00000003946 vs. C. finmarchicus
Match: gi|592763590|gb|GAXK01190978.1| (TSA: Calanus finmarchicus comp335144_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 98.9821 bits (245), Expect = 7.656e-23
Identity = 70/222 (31.53%), Postives = 116/222 (52.25%), Query Frame = 0
Query:    1 MINWLNEMNNRDVVVLYFGAIDFEESTYPAL-EKLLKVPLINE--RLNKDYKTNKKWPTLGKAIGEKNNIFIFMR------TNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELC----HNQGDLLKV---AAFGAGFKVWT-CLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNY--LGKNGKVPIDVIHNMNHLN 203
            M  WL++ +  +VV L FG ID+ E T P+L E L++   + +  R+NK +K    WPTLG+A+     +FIF+R      T N ++  +  +  P H    + L++ +  IT++YK G +G+DC   + +  + C      + D LK+   + FG G  + T C+ + AR CN  +K A++ C  +    NF+ +D+PNY  L +   V +    NM   N
Sbjct:  177 MKKWLDQ-HPSEVVALNFGNIDWPEETIPSLMETLIEEFSLQDGVRINKAFKATGSWPTLGEAVKSNERLFIFLRDSIGAVTENELEIVKEIKVKPGHDVASKNLTEFEASITTSYKAGDVGSDCSFVLRSNADACKSENQTETDFLKLSFFSKFGKGGAIGTECVHKMARKCNQWVKQAVDQCNYRNFKPNFLLVDYPNYQALAEQNIVQLCQAVNMERAN 839          
BLAST of EMLSAG00000003946 vs. C. finmarchicus
Match: gi|592828609|gb|GAXK01128664.1| (TSA: Calanus finmarchicus comp1507767_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 93.5893 bits (231), Expect = 4.893e-21
Identity = 64/213 (30.05%), Postives = 105/213 (49.30%), Query Frame = 0
Query:    1 MINWLNEMNNRDVVVLYFGAIDFEESTYPALEKLLKVPLINE---RLNKDYKTNKKWPTLGKAIGEKNNIFIFMRTNNPIDDKEFHREVPF--HKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHN----QGDLLKV---AAFGAGFKVWT-CLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNYLGKNGKVPIDVIHNMN 200
            + +WL++ ++ +VVVL+FG I     T P L+K LK         ++N  +K    WP +G A+     +F+F+R    I++ EF RE+    H       S  D+ +TS+YK   +G DC   +  +   C +    Q D LK+   + FG G  + T C+ E A+ CN  +  A+  C  +    NF+ +D+PNY G   K  + +   +N
Sbjct:  855 IAHWLDK-HDSEVVVLHFGNIALPSVTIPRLKKALKEVFSTRAGVKINSSFKKYGNWPLMGDAVENNERVFVFIRDEEEIEENEFVREIKRKPHDDLSNNKSSSDVFMTSSYKAETVGDDCSYILQTSSTACMSDMWRQTDFLKLSIFSRFGKGGTIGTECIHEMAKKCNQWISKAVSNCNFRAFRPNFLLVDYPNYQGLADKNIVQLAFEVN 1490          
BLAST of EMLSAG00000003946 vs. C. finmarchicus
Match: gi|592815397|gb|GAXK01139171.1| (TSA: Calanus finmarchicus comp195901_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 2.612e+0
Identity = 15/54 (27.78%), Postives = 28/54 (51.85%), Query Frame = 0
Query:   89 HKKHKQTL-SKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQGDLLKVAAFGA 141
            H+KH   + SKD +   + Y++GP+  +C+  V  A    ++  ++LK    G 
Sbjct:  636 HEKHAPAVHSKDSVRRPNIYRNGPVKINCQKCVRRACSAVYHNNNMLKETRQGG 797          
BLAST of EMLSAG00000003946 vs. L. salmonis peptides
Match: EMLSAP00000003946 (pep:novel supercontig:LSalAtl2s:LSalAtl2s211:896432:899360:1 gene:EMLSAG00000003946 transcript:EMLSAT00000003946 description:"snap_masked-LSalAtl2s211-processed-gene-9.14")

HSP 1 Score: 422.55 bits (1085), Expect = 9.842e-152
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
Query:    1 MINWLNEMNNRDVVVLYFGAIDFEESTYPALEKLLKVPLINERLNKDYKTNKKWPTLGKAIGEKNNIFIFMRTNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQGDLLKVAAFGAGFKVWTCLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNYLGKNGKVPIDVIHNMNHLN 203
            MINWLNEMNNRDVVVLYFGAIDFEESTYPALEKLLKVPLINERLNKDYKTNKKWPTLGKAIGEKNNIFIFMRTNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQGDLLKVAAFGAGFKVWTCLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNYLGKNGKVPIDVIHNMNHLN
Sbjct:    1 MINWLNEMNNRDVVVLYFGAIDFEESTYPALEKLLKVPLINERLNKDYKTNKKWPTLGKAIGEKNNIFIFMRTNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQGDLLKVAAFGAGFKVWTCLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNYLGKNGKVPIDVIHNMNHLN 203          
BLAST of EMLSAG00000003946 vs. nr
Match: gi|908415227|ref|XP_013068833.1| (PREDICTED: uncharacterized protein LOC106056570 [Biomphalaria glabrata])

HSP 1 Score: 59.6918 bits (143), Expect = 2.810e-7
Identity = 53/179 (29.61%), Postives = 85/179 (47.49%), Query Frame = 0
Query:   12 DVVVLYFG-AIDFEESTYPALEKLLKVPLINERLNKDYKTNKK--WPTLGKAIGEKNNIFIFMRTNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQG--DLLKVAAFGAGFKVWTCLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNYL 185
            ++V L F   I   E  +PAL + L   L    LNK ++ + K  WPTL + I +K  IF+F     PI ++  H E  F+ K+K   S+      ST+ +  +   C   V+   E+C ++   +LL+V+   +GF    C+  +A  C P    ++  C    E   F++ D PN L
Sbjct:   15 EIVTLNFNHEIQQPEKVFPALSRQLLTQL-GPMLNKHFRKSPKHVWPTLNQTIRKKKRIFVFY---APIIERPPHDE--FYNKYKWIHSER--FYGSTWIEFGVNDGCNKVVNITKEVCESRNWRELLEVSIIPSGF----CINSNAAKCRPFYHQSLRAC----EQFRFVRNDSPNVL 177          
BLAST of EMLSAG00000003946 vs. nr
Match: gi|1005421301|ref|XP_015761166.1| (PREDICTED: uncharacterized protein LOC107340328 [Acropora digitifera] >gi|1005421303|ref|XP_015761175.1| PREDICTED: uncharacterized protein LOC107340328 [Acropora digitifera])

HSP 1 Score: 59.3066 bits (142), Expect = 5.652e-7
Identity = 54/195 (27.69%), Postives = 92/195 (47.18%), Query Frame = 0
Query:    3 NWLNEMNNRDVVVLYF---GAIDFEESTYPALEK-LLKV--PLINERL--NKDYKTNK-KWPTLGKAIGEKNNIFIFMRTNNPIDDKEFHREVPFHKKHKQTLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQGDLLKVAAFGAGFKVWTCLWESARICNPRLKDAIEGC----QSKTEIINFIQMDFPNY 184
            +WL   N  +VV+++F      D+ +    +LE  LLK+  P     L  N  +K N+ +WPTL +AI     IFIFM      D+            H   +  +  I +S    G + + C +   NA   C +    + +AAFG+ F +  C W+ A++C+  + +A E C    +S  + +NF+ +D+ +Y
Sbjct:  125 SWLTS-NPNEVVIIHFNRDSQKDYRKQIAKSLEATLLKLWQPTSTRGLAMNTYFKKNQGRWPTLKEAIRRNQRIFIFM------DNGLLQY---LGGSHDWVVQSNHNINSSWASFGVLASSCSSITTNAKSKCVSMDSFMSLAAFGS-FGL--CTWDMAKVCSKWIGEAQEACYQKRKSYRKTVNFLLVDWLDY 306          
BLAST of EMLSAG00000003946 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold112_size353035-snap-gene-2.32 (protein:Tk07397 transcript:maker-scaffold112_size353035-snap-gene-2.32-mRNA-1 annotation:"predicted protein")

HSP 1 Score: 114.005 bits (284), Expect = 5.897e-30
Identity = 63/205 (30.73%), Postives = 103/205 (50.24%), Query Frame = 0
Query:    3 NWLNEMNNRDVVVLYFGAIDFEESTYPALEKLLKVPLINE----RLNKDYKTNKKWPTLGKAIGEKNNIFIFMRTNN-PIDDKEFHREVPFHKKHKQ-TLSKDDIIITSTYKDGPIGTDCKTYVDNAMELCHNQGDLLKVAAFGAGFKVWT-CLWESARICNPRLKDAIEGCQSKTEIINFIQMDFPNYLGKNGKVPIDVIHNMN 200
            +W+ E + R+VV LYFG + +E+ T+  L + LK+         ++N  +K    WPTLG+AI     +F+F+R+   P  +    +EV   ++     +    + I ST+    I   C   ++   E C    +L K A F    +    C+WE AR CNPR+ +A++ C      +NF+Q+DFPNY   +    +D IH +N
Sbjct:  267 HWMVE-HPREVVTLYFGELHYEDETFGHLLEALKLQFGQSDSPIQMNTQFKAEGTWPTLGQAIEANQRLFVFIRSAMVPAHELGMVQEVQVSQRDPSPAVIAGSVRILSTFGSRGIDDQCSEVIETNREACSLSSELTKTAVFATFLRSGADCVWEIARKCNPRVPEAVQACLESKANVNFVQVDFPNYPAGSRVQLVDYIHQLN 470          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003946 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003946 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592763589|gb|GAXK01190979.1|7.427e-2331.53TSA: Calanus finmarchicus comp335144_c0_seq2 trans... [more]
gi|592763590|gb|GAXK01190978.1|7.656e-2331.53TSA: Calanus finmarchicus comp335144_c0_seq1 trans... [more]
gi|592828609|gb|GAXK01128664.1|4.893e-2130.05TSA: Calanus finmarchicus comp1507767_c0_seq1 tran... [more]
gi|592815397|gb|GAXK01139171.1|2.612e+027.78TSA: Calanus finmarchicus comp195901_c0_seq1 trans... [more]
back to top
BLAST of EMLSAG00000003946 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000039469.842e-152100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s211:89643... [more]
back to top
BLAST of EMLSAG00000003946 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003946 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003946 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|908415227|ref|XP_013068833.1|2.810e-729.61PREDICTED: uncharacterized protein LOC106056570 [B... [more]
gi|1005421301|ref|XP_015761166.1|5.652e-727.69PREDICTED: uncharacterized protein LOC107340328 [A... [more]
back to top
BLAST of EMLSAG00000003946 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold112_size353035-snap-gene-2.325.897e-3030.73protein:Tk07397 transcript:maker-scaffold112_size3... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s211supercontigLSalAtl2s211:896432..899360 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s211-processed-gene-9.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003946 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003946EMLSAT00000003946-699793Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s211:896432..899360+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003946-686712 ID=EMLSAG00000003946-686712|Name=EMLSAG00000003946|organism=Lepeophtheirus salmonis|type=gene|length=2929bp|location=Sequence derived from alignment at LSalAtl2s211:896432..899360+ (Lepeophtheirus salmonis)
CTAAACTTGACAAAATGAACACCGGTACCGTAATCTGGTAGTTACTAATT AATTACTCAGAAGAGATTTGTAACAGATACTCAACTATTCTACCATGACA GAGTGTTTCATTGTTATAAACCTTTATTGTTTAGGCCCCCAAATGGACAA CATCAAAATTGTGACGTCAGAATAGGCCAGAGGGAGACTCATTTTTTTAT TATTATTACTAATAATATATTATCAAGTGTTAAAACATTCATGATTTTTA TTATKTTCCCCAAMATACAAGACGTGACGATCAATATTCAGTGTATCAAA GCTGTGTAATATAAGAACAGTTTGAAATATTTCGTTTCAAATCATGTTCA TGAACAATACCTATTGTTGTTTCTATATTATATTGAGTCTATGCGTTGCT ATTATCGTCCTCATTGAGACGGCTAATGGATTCAAATTACGCATTGCTCA ATTTCAAGTTTCGAACAAGAAAAGTGCAGGAATGGATGGAGGTTTCCTGG GTTTTCTCAACCTTGGAGGAGGGGAATTTCGCATTAAAGTATAGAAAATC TAAACTTTTTTAAGCAATGACATTCTAATTATTACTATGTGAATATATAT GTTTTTTTATAAACTACTCATCAGATATGCAATGAGATGACAAATATTTG TTGTGAGACATTAGATCCATTAGAGACACAAAATAATGATTGGGAACAAT CTGAGATCAACTTTTTCATCGGAAGGCAACTACAAGATTGTGAAAACTTT GAAATGACAGGATGCATTTCTTTAACAATGATCCACGAAGGCAATGACGG AGGMGAGTTGGAAAATGTCACATTTTATGGTTCAGACTTTGGATATGGAG AAAATAATCGGCAAGAATACATATGCCCTATTAGGGTCAAGTTGGATGGT TACAACTCAATAAAAGTGGCATGTACATCAAAAAATAACACTTATGATCC AAATAGTAAATTCTTCTTTACCACATATTTAATACATATTAATAACTAAA CGGATATTACAGGAGCATGTAATGGAGATGAAAGGTTTTGCCATATACCA TTTAGTCGATTTACATTTTTTGGTACTCACAATGCTGGTACTGGAGAAGA TATCTCCAGCATTTCCAAGATTAATTGTGCTTTTAAAAATCAAGATTTGA ATGTGAGGGAGCAACTTGACTTTGGAGTTCGCTTCTTTGATCTTGATATC ATTCAGAGGTTTGAACAAAAAAAAACTTAACTTTTAAAAAATATTAGCAC GAATAATTTTCTTCTTTCCAAAAATGTTAAGTAAAAACCTATACAACTGT GATGGCTTAGAATCTGGACATGGCAAATACCCAGAATTGGGCTTGTACCG CTGTTTCGGTAAATTGGAAATATTCGTAGAGGAAATGATCAACTGGTTAA ATGAAATGAATAATAGAGACGTTGTTGTTTTATATTTTGGTGCTATAGAC TTTGAGGAGTCCACGTATCCAGCACTGGAAAAACTATTAAAAGTTCCTTT AATCAATGAAAGACTAAATAAGGATTACAAAACGAATAAGAAATGGCCGA CTCTTGGAAAAGCAATAGGAGAAAAAAACAATATCTTTATTTTTATGAGA ACTAACAATCCTATTGATGATAAAGAATTTCATAGAGAGGTTCCTTTTCA TAAAAAACATAAACAAACCTTATCTAAAGATGACATTATCATCACAAGCA CGTATAAAGATGGGTAATAACTATACTTGTACAGTTCTAGACTATAACTT CGATTTTACATTCTTGTTTATATTCAGACCCATCGGCACAGACTGTAAAA CTTATGTGGATAATGCTATGGAACTATGCCATAATCAAGGCGATTTATTA AAAGTAGCGGCTTTTGGAGCAGGATTCAAAGTGTGGACGTGTCTTTGGGA ATCAGCTAGAATATGTAATCCAAGATTGAAGGACGCTATTGAAGGCTGTC AATCCAAAACTGAAATAATCAACTTTATACAAATGGACTTTCCTAATTAT TTAGGGAAGAACGGRAAAGTACCCATCGACGTTATACACAACATGAACCA TCTTAATTGACACTTGAATATACTTTTTAATAATTAAACTACTGTAATTG AAATTTACAAAAAATAAAAAAACCCTTGCTACTTACATATTAGTAGATGA GAGGGGCTCCAAGAATGTCTTTTGAATAGCGGTCAAGCAACGAATAAAAT CCATTTCCTTTTTGAGCAGATCCTCTATCACTTGTTTTCGATTATCAATA CCTTTTTGAATGATAAGGGAGCCGAGCATGAGCTGGGCTTTGTCGTCGTC TGTCATGTCCTCAGTCTTAGGGATGCAATACTTGGAGTTGTCTTGGGAGG AATCATCCAAGACTCGAACATAGTTTGAAGGAAACCAGCCTGTCTTTCCT CTTCGGGAATGCGTTCCCTCCCACCAACCACCATCTTCGCGCTGGGTTAC CGTTATCACATCTCCGATATCAAACATTAACTACAAATACAAGAGCACTC CCATTACATACACAATCACTTCTGCCTCAACATAACAACAACAAAAATTA GGAGTCAAACTACTGCCATGAGTTTTAGGTGTAGTTTAGAATAGGGCTAC TTTAAGTGGAATAGACGCCACACCCAAAGGGATCATAAAAAAATACAAGA GTAGAAATGAGTCATTCTAGCTTGCTTATGTATTGACACACTACAACTGT GGAGGACAACACGAATCCAAAATACACATTCCATCTATCCAATCCTAATT ACAAGTCAGGAAAAGTCAGGAAAAGTCAGGAATTCATGAATGGARCCCAA GCCCTGGCCTGCCTATTAGTTACTCAAAAGGATGCATCCTCAAGTCCCGA GGGGATTTTTTTTTCTTTCCAACCCACCTCATCATTGTTGCTGCCTTTGA ACTTATAGATGGCTTGTACCAAATTCGAA
back to top
Add to Basket