EMLSAG00000004070, EMLSAG00000004070-686836 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004070
Unique NameEMLSAG00000004070-686836
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004070 vs. GO
Match: - (symbol:vgll2b "vestigial like 2b" species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] InterPro:IPR011520 Pfam:PF07545 ZFIN:ZDB-GENE-050809-113 GO:GO:0005634 GO:GO:0006355 PANTHER:PTHR15950 eggNOG:NOG39971 HOGENOM:HOG000143402 HOVERGEN:HBG057778 EMBL:BC100003 RefSeq:NP_001028267.1 UniGene:Dr.87795 STRING:7955.ENSDARP00000052445 GeneID:606659 KEGG:dre:606659 CTD:606659 InParanoid:Q499A6 NextBio:20892510 Uniprot:Q499A6)

HSP 1 Score: 55.0694 bits (131), Expect = 3.072e-8
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0 
Query:  104 PPSHLNQHDEDSSDSTIS-AHRLSSNIVVFTHYVGNASSVVEDHFSRALSSYERDETSWLESNPSSD 169
            PPS   Q +E + D  +  A  LSS  V+FT+Y G+ SSVV++HFSRALS+Y   E     S+PS+D
Sbjct:   71 PPS--GQVEEATKDKEVGEAEYLSSRCVLFTYYQGDISSVVDEHFSRALSTYMEAEGKKRASDPSTD 135
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BLAST of EMLSAG00000004070 vs. GO
Match: - (symbol:VGLL3 "Uncharacterized protein" species:9031 "Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of transcription, DNA-templated" evidence=IEA] InterPro:IPR011520 Pfam:PF07545 GO:GO:0005634 GO:GO:0006355 OrthoDB:EOG7K9K52 TreeFam:TF326340 InterPro:IPR006627 PANTHER:PTHR15950 SMART:SM00711 GeneTree:ENSGT00530000063353 EMBL:AADN03000958 Ensembl:ENSGALT00000024991 Uniprot:F1NR63)

HSP 1 Score: 43.8986 bits (102), Expect = 2.551e-4
Identity = 19/44 (43.18%), Postives = 29/44 (65.91%), Query Frame = 0 
Query:  109 NQHDEDSSDSTISAHRLSSNIVVFTHYVGNASSVVEDHFSRALS 152
            ++ +ED  D       L+S  V+FT++ G+  SVV++HFSRALS
Sbjct:   36 SKQEEDEKDQPAEMEYLNSRCVLFTYFQGDIGSVVDEHFSRALS 79
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BLAST of EMLSAG00000004070 vs. C. finmarchicus
Match: gi|592897233|gb|GAXK01061142.1| (TSA: Calanus finmarchicus comp783134_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 4.270e-5
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 0 
Query:  122 AHRLSSNIVVFTHYVGNASSVVEDHFSRALS-SYERD 157
            A  LS+N V+FT+Y G+ S VV+DHFS+ALS S +RD
Sbjct: 1030 AQYLSANCVIFTYYSGDISKVVDDHFSKALSQSNDRD 1140
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BLAST of EMLSAG00000004070 vs. C. finmarchicus
Match: gi|592780281|gb|GAXK01174287.1| (TSA: Calanus finmarchicus comp231303_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.743 bits (99), Expect = 2.926e-4
Identity = 15/40 (37.50%), Postives = 29/40 (72.50%), Query Frame = 0 
Query:  112 DEDSSDSTISAHRLSSNIVVFTHYVGNASSVVEDHFSRAL 151
            D ++ D   +A  L+ N++++THY G  S++V++HF++AL
Sbjct:  802 DGEADDLQRTAQYLTRNVILYTHYAGEVSNIVDEHFTKAL 921
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BLAST of EMLSAG00000004070 vs. L. salmonis peptides
Match: EMLSAP00000004070 (pep:novel supercontig:LSalAtl2s:LSalAtl2s216:644490:649399:-1 gene:EMLSAG00000004070 transcript:EMLSAT00000004070 description:"maker-LSalAtl2s216-snap-gene-6.7")

HSP 1 Score: 341.273 bits (874), Expect = 9.806e-121
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 
Query:    1 MSCATAPVMYQPXSPYNNSSPSATMPPQGFHSSPDRVPPSQQSGIVEDNNNRSHLENKHHVQQVFKVEHLHSTPPQDLSSYQPNNVSNTSSCNNSQSSPPTSRPPSHLNQHDEDSSDSTISAHRLSSNIVVFTHYVGNASSVVEDHFSRALSSYERDETSWLESNPSSDASL 172
            MSCATAPVMYQPXSPYNNSSPSATMPPQGFHSSPDRVPPSQQSGIVEDNNNRSHLENKHHVQQVFKVEHLHSTPPQDLSSYQPNNVSNTSSCNNSQSSPPTSRPPSHLNQHDEDSSDSTISAHRLSSNIVVFTHYVGNASSVVEDHFSRALSSYERDETSWLESNPSSDASL
Sbjct:    1 MSCATAPVMYQPXSPYNNSSPSATMPPQGFHSSPDRVPPSQQSGIVEDNNNRSHLENKHHVQQVFKVEHLHSTPPQDLSSYQPNNVSNTSSCNNSQSSPPTSRPPSHLNQHDEDSSDSTISAHRLSSNIVVFTHYVGNASSVVEDHFSRALSSYERDETSWLESNPSSDASL 172
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004070 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 2
Match NameE-valueIdentityDescription
-3.072e-847.76symbol:vgll2b "vestigial like 2b" species:7955 "Da... [more]
-2.551e-443.18symbol:VGLL3 "Uncharacterized protein" species:903... [more]
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BLAST of EMLSAG00000004070 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592897233|gb|GAXK01061142.1|4.270e-559.46TSA: Calanus finmarchicus comp783134_c0_seq1 trans... [more]
gi|592780281|gb|GAXK01174287.1|2.926e-437.50TSA: Calanus finmarchicus comp231303_c0_seq1 trans... [more]
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BLAST of EMLSAG00000004070 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000040709.806e-121100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s216:64449... [more]
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BLAST of EMLSAG00000004070 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004070 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004070 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004070 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s216supercontigLSalAtl2s216:644490..649399 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s216-snap-gene-6.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004070 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004070EMLSAT00000004070-699917Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s216:644490..649399-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004070-686836 ID=EMLSAG00000004070-686836|Name=EMLSAG00000004070|organism=Lepeophtheirus salmonis|type=gene|length=4910bp|location=Sequence derived from alignment at LSalAtl2s216:644490..649399- (Lepeophtheirus salmonis)
ATGAGCTGTGCTACCGCGCCAGTCATGTATCAACCCTKCTCTCCATACAA
TAATTCATCCCCTTCGGCCACCATGCCTCCTCAAGGATTTCATTCTTCCC
CAGACAGAGTACCTCCATCACAACAGAGTGGCATAGTTGAGGACAATAAT
AACAGATCTCATTTGGAGAATAAGGTGAGAGACAATCACAAAATATGTCT
ATGGTTAGCTGCCTGTATAGGTATTATATATATATATACTTGCAATCATA
GTATTACCTTTTTTTAAAAGACATGGAAAAATTCCTTAAATGTTTATTAG
TAAGACAACTATTTCCCAGAAATATAAAAAGGAATTCTATTTTTTTTACT
TTATCGATTGGTTTTTTTCGTCTTTTTGAGTAGTAGTAATAATTAACACA
AAAAACATTTTTCAAATATTTTGAAACCACTTCTTAAGGTATAACGTACT
TTTTAGATAGTTCTTTTTCAATCAGTGGCAGAAATAAATAATTAACGATG
AGGATCCTTCTCCAATTTCTCTGTCTCTTTTAGCATCATGTGCAACAAGT
ATTTAAAGTCGAACACCTTCATTCGACTCCTCCACAGGATTTAAGCTCAT
ATCAGCCTAACAATGTCTCAAATACCTCTTCATGCAATAATAGTCAATCC
TCGCCTCCAACATCCCGACCTCCAAGTCATTTAAATCAGCATGACGAAGA
TTCCTCAGACTCGACGATCTCTGCACATCGCCTCTCTTCCAACATTGTCG
TGTTTACACACTATGTAGGAAATGCCTCATCTGTCGTGGAGGATCACTTC
TCCAGAGCCCTGAGTTCCTATGAGAGGGATGAAACATCCTGTAAGTTACA
ACATATATACCTCTAAAATCTCTACATTATTCCATGAGTTTGCTAGAGTG
GAATCCACATAACGAAAAGGGTCAAGAGGGGCAGCTGCTTCCTTCATTTC
CGGTCATTCCTCTTCTCCCTTTATCCTTCCCCCCTCCTGTAACATGTACT
GAGGTTTTTGATCACCTTTGCTTCCTTTTTGCCTATATTTTTGTGCCCAA
TGCTGAAGGAAAAATCGTTTTTTTTTCTTCTATGTGTTATTTTTTGTTTG
AAACAAAACAAWAATTAAAAAAAAAAAAAAAAAAAGTACTCTTTWTTTTA
AGCCCCTCTTTCTCTCTATGTGAGACGATTTCTTCTTTTGATCATGAGCA
GTCCTGCTTAGAACGTGCACATTTGGTTACGTAGTAGTTAGTTCTTATAT
TTATCGATAATGTGTATGGAAATAGGACCTACATGGAAACACAGATGTGA
AGTGATAAATTAATGATTTTTTTCCCTCTCTTTTTTCCCTTAAAAATAAA
TAATATATTAATAATTTTTGTGTCTATTCTCACCTCCCGCAAAGGCTTTG
CATTTTAAAATCTACAACTTGAGACTTTTCGACCTTGGTGATAACTCGTC
TTAGTGCGATATACGTATGTAAATGATTGTGTTTTGTGTGAATGAATGAA
AAAGAATCCCCCTCCCCCCTAAAGAAGAATCATTCCTGCGGACGCCCCTA
CAGCTCTAAACTCCACTCCAGACTCTGAAGTACCTAAAAATGTCCCACAA
ATTTGAATACAAGGCCTATAATTTATCTAAATATTTGCCTATGTGTATAT
ATCAAACATTTTCATCACTGCAGAGCCCCTAAATATTTCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGCAACCTCAAAATGAGATGAAACATTATTAATAATAGATTTTCATT
ACTTTTAATGAGAATGGGATAAGTTGTTGATGTTATTTGTGCATCGATTT
GATTAAAATGACTAATAATTGATATCAGTAATCAGTGACACAGTAGATAT
AAATGTATAAGAAATAAAAATATGAAGGGCATATTTTAGAGTTTATTTTT
TCTATGAGTAAAATTGTTATAACAAGGATAGAGAAAACGGAGAGTCAACA
ATCGTGTAATGAATGTCGTAGAGAATTAAAATAACTTTTTTTATTAATGA
TTATTCTGATGACGTAAAACAAATAGATACATCCCCAAAAGACTGCTGTT
CTAATTCAATTCCCCCCTTTGGAATATAAGTCTGTATTTTACTTTAAAAT
AAACCCCTGGGTTGCTCAAAAAAAGGAGTAACTCCTAGTTCAATGTATAA
TTGGTAATAATTAAAATGACTGACGTGATAATTAAGTAAGAGATCTAGTT
GCATAAACTATGACCTCGTGGTATCTAAAAATAAAAGAAACCGAAAATTA
ACGACAATTTGGAAGGAGATCACCTATGATGTCATGACATTTAATTAAAT
TAGCTGTGAGTAGACATGAGATAAACACAAATCCCATATAGGAAAAACAT
CAAAGTAGTTATTAGGTTATAATTCATTGTTCTCTTTTCAAAAAAAAAAG
AAGTTCAGAATACCAAGGAGGCAAAAATATGCACGCGTCTAGGTCATATT
TTATACAGCTCTAGTAATATTGTAGTTAACTTTTACACGACATTCATGTA
TGTATATATATATATGTTTGAGTTCTTATTCGTGATGTTATGTTTGTTTA
AGAGAGACGAGCCAACTTTTTATTGACAGAGTTACATTTAAGTGACTCTA
AACTGTTATTGGTTACACTTACCTTTTGAGTCTTTTCTTTCTTTTTCTTT
TCAAAGTAAAGACAAGACAGGCGTATTAGATACAAAAACAAAGCAATAAT
GATAACTATAAAAAGTAATCCCCATTTCTGGATATATTATTATCTATATA
TGTATGTACTTGTCTTCACCCATTACAAAATTACTTTGTCAAACAGTCAT
AATATGTCTCTTTACGAATAATGGCACGGCTGTCCATTTGCGTTCATATT
CGGGAACAAAATTGGTTTTTGTGTCATACAGGCCTGGAGATTTTTCATTT
GATTAATTGGATTTTATAAAAATAGTTGCATTTTCTTAGAAAATAAACGA
AGGGTTTTTTTCTTTTTTTCAATTGACCTTTTTTGTAAAAAAAGGTCATT
CCTTTTTTAAATAAATTTTGTGCTTGATTCTCATACTTTGATATACATTT
GACCTGAGGTTATTAATTCTACTACATGTCGTCAATCAATCCTGCTCTCA
AGTATTTAAATAATTTATAACGAATGTAGCACATTAAACTACAAATACTT
AAATAGTGATTACAGTTAAATATTTGTGATTAATAGCTCATCTAAATGAT
CAAATGCAGGTCTCTTAAACAGACCCTCCAAAACAATAATGCCATTCAAA
TACTATCTCCAAACTATTTGAAACATATAAATCAGTTATTTGAGCTGTTT
TAATTGAGGATGCGTGATATATATATTGTAAATGCGTGAGTCTCACGCTA
ACTGCAGTAGATATAAGAGCCCTTTAATTAACTTATTAATTATTTTGATT
ATTTGTTTATTAATAGATAAACCCATGTCAGCTCGTAATTTGCCAGCCTC
ATTTTGGACAGCGCCCTCGGACTATACGCCKCCCTCTCCTCGTCACTCTG
CATCAGCGACAGCATGCAATNAATCAATCCAGCACTGTTCCATACGGTGA
CATATATCCTGAATCCATAACAGGAGCACTTCATCAATTAGCTGCAGACT
GGCAGTACCCCCATGCCTCAGTGGGACACACTCCTTCCTCCTCTTCTTAT
TCCTCCAATTATTCAAATTATGCTGCAAGGTTCCAGTCAGCCAATTATTG
GTCCCCTCGCCTAGTGGGCTCTTCATCAACCACCTCATCTGTCAAAAGCG
AATGGTCGCCTGAGCCCCCGTACTCTGACTTTTCTTCACATCCTCATCAT
CTGTCTCATCATCCATACCATCACTATTCCAACATAGCAGCTGTTGCTGC
TGTCGGKAAGTGCTGTCAATGAAGTAAAATGTTCTACCTAAATTACTACC
GGTACTTCCATACTTTCTTTAGTAATATGTATCTACCTATCCCTCCTTTT
AAATCCTACTTGGAACACTTTTCTGGGGTCGTTAGCCATTCCTACATAAA
TATGAAGGATTTTGTACAAATAATAACGCTTATTTGTGTGAGCAAATTGA
ATATTTTTTTACCATCAGATTGTGGATATATAATAGTGCTTGGATAAAAG
AGCTTTAAATTTTGTTGACTATTGAGGATAGATTATTTCTAAATTATAAT
TAAACAAGACATATTCATGGGGTAGATATCCACACAATAAGAATTCTAGT
AAAATTCGTTCGCAAATCCCCCAATTATGGAGACTTATATGATATTGCCA
GGGTTTATTTTTTAAAATAACGTAAGGACGCTGTAAGGCACCGGTTCGAA
CACCAATTAGTATCCCGGTACCTCTGTTATAGCTAAAGACACATACGCCG
TACACCTGCACCAAAACAAATCATCATCACGTAATTGATTGTCTCCAACT
CATGATCATGATTCCCCAATAATAATACTAAAAACAACAATAGTGGAACA
GTAGCAATCTTTTAGACAATTATTATCAGCGGGTGGGTGGGAGACATGAA
TGGGAATGGGGAAAGGAGGGGGAGAGAGGGAGGAAAGAACCCTTTAAAGA
CCCATAATTCATTGTGCTCTATTGTTGATACAATTACCAACTATCCACGT
GTTCTGATTTCAACACGTGGGTGTCTACCCTTTTATAGTTAAATACATGT
AAAATTATATTATTATATTGAATATATGGATCCTTGAAGGGGACGTCCCC
TTTTTGCCATCAAATAATTTGTTCCCCTCCTTATATATTTGACAAATTTT
CTAATTATCTTTTATTTATTCATAGGGTTAGAATCGAATCCAAGCAGTGA
CGCCTCCCTA
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