EMLSAG00000004251, EMLSAG00000004251-687017 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004251
Unique NameEMLSAG00000004251-687017
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004251 vs. C. finmarchicus
Match: gi|592926731|gb|GAXK01031721.1| (TSA: Calanus finmarchicus comp20470_c2_seq18 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 7.367e-1
Identity = 13/34 (38.24%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:   33 LRISSTLLQTKKWPRFSVRIASELLVWQNSSHLI 66
            L ++   L   +W R S R+  ELL WQ   HL+
Sbjct:  245 LAMTCPALPLSQWTRGSTRLCGELLGWQREPHLL 346
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BLAST of EMLSAG00000004251 vs. C. finmarchicus
Match: gi|592926733|gb|GAXK01031719.1| (TSA: Calanus finmarchicus comp20470_c2_seq16 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 7.708e-1
Identity = 13/34 (38.24%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:   33 LRISSTLLQTKKWPRFSVRIASELLVWQNSSHLI 66
            L ++   L   +W R S R+  ELL WQ   HL+
Sbjct:  386 LAMTCPALPLSQWTRGSTRLCGELLGWQREPHLL 487
[Close]
BLAST of EMLSAG00000004251 vs. C. finmarchicus
Match: gi|592926734|gb|GAXK01031718.1| (TSA: Calanus finmarchicus comp20470_c2_seq15 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.998e+0
Identity = 13/34 (38.24%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:   33 LRISSTLLQTKKWPRFSVRIASELLVWQNSSHLI 66
            L ++   L   +W R S R+  ELL WQ   HL+
Sbjct:  696 LAMTCPALPLSQWTRGSTRLCGELLGWQREPHLL 797
[Close]
BLAST of EMLSAG00000004251 vs. C. finmarchicus
Match: gi|592926736|gb|GAXK01031716.1| (TSA: Calanus finmarchicus comp20470_c2_seq13 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.079e+0
Identity = 13/34 (38.24%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:   33 LRISSTLLQTKKWPRFSVRIASELLVWQNSSHLI 66
            L ++   L   +W R S R+  ELL WQ   HL+
Sbjct:  965 LAMTCPALPLSQWTRGSTRLCGELLGWQREPHLL 1066
[Close]
BLAST of EMLSAG00000004251 vs. C. finmarchicus
Match: gi|592926744|gb|GAXK01031708.1| (TSA: Calanus finmarchicus comp20470_c2_seq5 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.194e+0
Identity = 13/34 (38.24%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:   33 LRISSTLLQTKKWPRFSVRIASELLVWQNSSHLI 66
            L ++   L   +W R S R+  ELL WQ   HL+
Sbjct: 1751 LAMTCPALPLSQWTRGSTRLCGELLGWQREPHLL 1852
[Close]
BLAST of EMLSAG00000004251 vs. C. finmarchicus
Match: gi|592926745|gb|GAXK01031707.1| (TSA: Calanus finmarchicus comp20470_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.195e+0
Identity = 13/34 (38.24%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:   33 LRISSTLLQTKKWPRFSVRIASELLVWQNSSHLI 66
            L ++   L   +W R S R+  ELL WQ   HL+
Sbjct: 1769 LAMTCPALPLSQWTRGSTRLCGELLGWQREPHLL 1870
[Close]
BLAST of EMLSAG00000004251 vs. C. finmarchicus
Match: gi|592926746|gb|GAXK01031706.1| (TSA: Calanus finmarchicus comp20470_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.197e+0
Identity = 13/34 (38.24%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:   33 LRISSTLLQTKKWPRFSVRIASELLVWQNSSHLI 66
            L ++   L   +W R S R+  ELL WQ   HL+
Sbjct: 1791 LAMTCPALPLSQWTRGSTRLCGELLGWQREPHLL 1892
[Close]
BLAST of EMLSAG00000004251 vs. C. finmarchicus
Match: gi|592926747|gb|GAXK01031705.1| (TSA: Calanus finmarchicus comp20470_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.200e+0
Identity = 13/34 (38.24%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:   33 LRISSTLLQTKKWPRFSVRIASELLVWQNSSHLI 66
            L ++   L   +W R S R+  ELL WQ   HL+
Sbjct: 1821 LAMTCPALPLSQWTRGSTRLCGELLGWQREPHLL 1922
[Close]
BLAST of EMLSAG00000004251 vs. C. finmarchicus
Match: gi|592926748|gb|GAXK01031704.1| (TSA: Calanus finmarchicus comp20470_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.205e+0
Identity = 13/34 (38.24%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:   33 LRISSTLLQTKKWPRFSVRIASELLVWQNSSHLI 66
            L ++   L   +W R S R+  ELL WQ   HL+
Sbjct: 1881 LAMTCPALPLSQWTRGSTRLCGELLGWQREPHLL 1982
[Close]
BLAST of EMLSAG00000004251 vs. C. finmarchicus
Match: gi|592926729|gb|GAXK01031723.1| (TSA: Calanus finmarchicus comp20470_c2_seq20 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 5.249e+0
Identity = 12/34 (35.29%), Postives = 18/34 (52.94%), Query Frame = 0 
Query:   33 LRISSTLLQTKKWPRFSVRIASELLVWQNSSHLI 66
            L ++   L   +W R S ++  ELL WQ   HL+
Sbjct:   20 LAMTCPALPLSQWTRGSTKLYGELLEWQREPHLL 121
[Close]
BLAST of EMLSAG00000004251 vs. L. salmonis peptides
Match: EMLSAP00000004251 (pep:novel supercontig:LSalAtl2s:LSalAtl2s222:654528:655752:1 gene:EMLSAG00000004251 transcript:EMLSAT00000004251 description:"maker-LSalAtl2s222-augustus-gene-6.18")

HSP 1 Score: 186.422 bits (472), Expect = 3.538e-62
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 
Query:    1 MSSETLLERRKLLVPNALNSFGPILRNMISKILRISSTLLQTKKWPRFSVRIASELLVWQNSSHLICLNYVPLKFLSFVRLFCKRLMYFDSYI 93
            MSSETLLERRKLLVPNALNSFGPILRNMISKILRISSTLLQTKKWPRFSVRIASELLVWQNSSHLICLNYVPLKFLSFVRLFCKRLMYFDSYI
Sbjct:    1 MSSETLLERRKLLVPNALNSFGPILRNMISKILRISSTLLQTKKWPRFSVRIASELLVWQNSSHLICLNYVPLKFLSFVRLFCKRLMYFDSYI 93
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004251 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004251 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592926731|gb|GAXK01031721.1|7.367e-138.24TSA: Calanus finmarchicus comp20470_c2_seq18 trans... [more]
gi|592926733|gb|GAXK01031719.1|7.708e-138.24TSA: Calanus finmarchicus comp20470_c2_seq16 trans... [more]
gi|592926734|gb|GAXK01031718.1|2.998e+038.24TSA: Calanus finmarchicus comp20470_c2_seq15 trans... [more]
gi|592926736|gb|GAXK01031716.1|3.079e+038.24TSA: Calanus finmarchicus comp20470_c2_seq13 trans... [more]
gi|592926744|gb|GAXK01031708.1|3.194e+038.24TSA: Calanus finmarchicus comp20470_c2_seq5 transc... [more]
gi|592926745|gb|GAXK01031707.1|3.195e+038.24TSA: Calanus finmarchicus comp20470_c2_seq4 transc... [more]
gi|592926746|gb|GAXK01031706.1|3.197e+038.24TSA: Calanus finmarchicus comp20470_c2_seq3 transc... [more]
gi|592926747|gb|GAXK01031705.1|3.200e+038.24TSA: Calanus finmarchicus comp20470_c2_seq2 transc... [more]
gi|592926748|gb|GAXK01031704.1|3.205e+038.24TSA: Calanus finmarchicus comp20470_c2_seq1 transc... [more]
gi|592926729|gb|GAXK01031723.1|5.249e+035.29TSA: Calanus finmarchicus comp20470_c2_seq20 trans... [more]

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BLAST of EMLSAG00000004251 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000042513.538e-62100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s222:65452... [more]
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BLAST of EMLSAG00000004251 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004251 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004251 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004251 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s222supercontigLSalAtl2s222:654528..655752 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s222-augustus-gene-6.18
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004251 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004251EMLSAT00000004251-700098Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s222:654528..655752+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004251-687017 ID=EMLSAG00000004251-687017|Name=EMLSAG00000004251|organism=Lepeophtheirus salmonis|type=gene|length=1225bp|location=Sequence derived from alignment at LSalAtl2s222:654528..655752+ (Lepeophtheirus salmonis)
TATCATAGGAATATAACCTTCTTTACTATTTCGTTACAAAAATTTATTAC
TACAGAGCACTCCACTTCAATGTATGTTAATGGGCTTACCTTTTATATAA
GCGGAGGAGCTTTTATTTACGTGCGTGAGTTATAAATGTATCACCATAGA
GAGTTGCTTTTTCTTATTTAATAATAAAAACGGGCGGGGGAACCAGGGGG
CGCTGCACCATTTTTAATACTGCCGCCTACTAAAAAAGAATTGGATTCCT
TATATCTTTATTTCATATTCCACTTTAATTCTTTTTCATTGTTCTGTCAG
AGCTCGATCCGTTCACATAGTTTCGAAACTTGGAAATTTTTGCACTTAAC
TTTTTTTGACTCTACATATAAGTAAGTCCTAGATTTTCCTGTACGGGGAG
TCCGTCATTTCTTAGCAGAGTTATTACTTATCTTTGTACGTGTGGGGGAT
GACTTGATAAGTCATTTTTATTTTAAATGACTGAAAATCAATTCCCCCCT
TCTTTCAATTATGGTTTAACTTGTCATAAATATCCTAATTTATTTTTTTC
ATTCATAGATTTAAATCAGTCAATATGCCTAAAGGAGCCGGACTTACGAA
ATCAATGAAGCTCTCCAATGAGCTCGGAGACATTGTTGGAAAGAAGGAAG
CTTCTCGTGCCGAATGCATTAAACAGCTTTGGGCCTATATTAAGAAACAT
GATCTCCAAGATCCTGAGAATAAGCAGTACTTTACTCCAGACAAAAAAAT
GGCCAAGGTAATATAATTAATTACATGCATTCTGMCGCGCCTTCGTTTAT
GGCCCTCTCCCGCCAAAACATTTGAATTTGAAAAGGGGGGGGGGAGAAAG
TAACTTAGCTCCTCCCATTCATTCCTCTCTTCTATGTTACTTAATTCTCT
CTCTCTCTCTCTCTCCTACAAAATTTACTTACAATTCAGTATTGATGCTA
ATGTTTATGTTTTTTTACAGGTTTTCGGTGAGGATCGCATCCGAGCTTTT
GGTATGGCAAAATTCCTCTCACCTCATTTGTCTTAATTATGTACCTCTAA
AATTTCTCTCATTTGTTCGATTATTTTGCAAAAGATTAATGTACTTCGAT
AGTTATATATAAATTTATAAACGTGTCAAAAGACAAAAAAAGAAAAAAAA
AATATCAAGAAATTTCCTTCAATATAGATTTTTTTATTAATGTAGAAGTT
ACTTTATTTTTTAATTTATTGTTTG
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