EMLSAG00000004315, EMLSAG00000004315-687081 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004315
Unique NameEMLSAG00000004315-687081
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004315 vs. C. finmarchicus
Match: gi|592802400|gb|GAXK01152168.1| (TSA: Calanus finmarchicus comp4676486_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 9.021e+0
Identity = 13/42 (30.95%), Postives = 23/42 (54.76%), Query Frame = 0 
Query:   85 LQKPNTIEKINSARSLYTRCSETNDYTELVVXSNPTPSEGEV 126
            L    +I+K  + + LY+ C E  +Y++ +   NPTPS   +
Sbjct:  154 LSSSQSIQKRTTKQYLYSTCMELQNYSKGISMINPTPSHTNI 279
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BLAST of EMLSAG00000004315 vs. L. salmonis peptides
Match: EMLSAP00000004315 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2272:5763:9474:1 gene:EMLSAG00000004315 transcript:EMLSAT00000004315 description:"maker-LSalAtl2s2272-snap-gene-0.5")

HSP 1 Score: 521.161 bits (1341), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0 
Query:    1 MKFTPTEEYYNVLKMTPIPSFNTETREFVSSIRDMVKWREYEIDLITETAIQFTQDFPDETNENMHLYVCKRLQYRRKCSVIMKLQKPNTIEKINSARSLYTRCSETNDYTELVVXSNPTPSEGEVIPLSQRVPIRLIDLNISEYTPRQIIHTPESGFNYVPFIFHVPPDIMGRQHKLIQMNGRHTQRGHPSIPMPSQDLTTLSSPSHTPKTAGLFVNKEGLMNAVIRALMDLPTEIYTIISAPMNIHXFTYLP 254
            MKFTPTEEYYNVLKMTPIPSFNTETREFVSSIRDMVKWREYEIDLITETAIQFTQDFPDETNENMHLYVCKRLQYRRKCSVIMKLQKPNTIEKINSARSLYTRCSETNDYTELVVXSNPTPSEGEVIPLSQRVPIRLIDLNISEYTPRQIIHTPESGFNYVPFIFHVPPDIMGRQHKLIQMNGRHTQRGHPSIPMPSQDLTTLSSPSHTPKTAGLFVNKEGLMNAVIRALMDLPTEIYTIISAPMNIHXFTYLP
Sbjct:    1 MKFTPTEEYYNVLKMTPIPSFNTETREFVSSIRDMVKWREYEIDLITETAIQFTQDFPDETNENMHLYVCKRLQYRRKCSVIMKLQKPNTIEKINSARSLYTRCSETNDYTELVVXSNPTPSEGEVIPLSQRVPIRLIDLNISEYTPRQIIHTPESGFNYVPFIFHVPPDIMGRQHKLIQMNGRHTQRGHPSIPMPSQDLTTLSSPSHTPKTAGLFVNKEGLMNAVIRALMDLPTEIYTIISAPMNIHXFTYLP 254
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004315 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004315 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592802400|gb|GAXK01152168.1|9.021e+030.95TSA: Calanus finmarchicus comp4676486_c0_seq1 tran... [more]
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BLAST of EMLSAG00000004315 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000043150.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s2272:5763... [more]
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BLAST of EMLSAG00000004315 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004315 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004315 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004315 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s2272supercontigLSalAtl2s2272:5763..9474 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s2272-snap-gene-0.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004315 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004315EMLSAT00000004315-700162Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s2272:5763..9474+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004315-687081 ID=EMLSAG00000004315-687081|Name=EMLSAG00000004315|organism=Lepeophtheirus salmonis|type=gene|length=3712bp|location=Sequence derived from alignment at LSalAtl2s2272:5763..9474+ (Lepeophtheirus salmonis)
ATGAAGGATGTTAAGCAGCAATCGTTCCTATCCAATCGGTTTGGTTTACT
CTATAAAACCGAAAGGAAAAAGGGAGTAGGATCCTTTACGAAAATCTGGG
CTTTCGGGACAGAACCAAGAAAGTCGATCCGGATTTCGTTTAATAAGGTA
TAAGTATGGGCATAGATGTCATTGAACAAAGATGATATTTCAACAACAAT
TTATAAATGTCAGAAGTAAGTGAAGTTTTATTTTTAAATAAGCATATATT
TCAAAGATATATTATTGGCTATTTAGAGTGACTTCATATGAAAAAGAAAT
CAAACAACGGAAGAATACTGGCTCAACAAGAACACGAAAACTCCAATATT
TGGATTTCAATTTCCCCGGCAATTTACAGGTGGCGCCGTAGTCTGTGACA
ATCTTTTGACCCTTATAACTTGATCAGGGGCTCCAATGATCAAGAGAGGG
TTATGTAGGTATATACTTAAGATGCTAATGGTTAAATTTTAATTAGTCTT
ATGTACTATGTATGCAGGGAAATAAAGACTTTATATACTTCGATATTGTA
AATGGAAAGTAATATACTAATAGTCAGCTTAGGGGTGGGAGGTAGGATGA
AGACGCACGTGACTTAGACAAGAATTACTAAGAGTTGTGTGCAAAAGTCT
TTTATGAAAAAGGGGGTGGGGGTGGGATAGAGATATGAAGAGTTAGAATA
GGGAGATGGGTAAGGGTAAGCCTAAAACACACGCCCACTAACCTTCAAAA
ATTCGTTGGATTGAATTTTGACACTTGTATTTTGACTTCCAAACGATCCA
KCTGTGCTTTCTGAAGCTCCAGTGACRAATAGGAAGCCGATTGTCCAGAA
TTGCCTTGAGATGTATGGACCAGACATGGTTCACTTATAACAGTCCCAGA
TTGTAGGGATCGAGAGCGATTTTACCAATGTCTTTAGGGTCTGATGCCAG
CTGTCGAAGTGTGAACACATTGGAAATTTTGCTCTCGATCCCTACAATCT
GGGACTGAGGTAGCATTTTACTGTCTGGTTCAAAACTTCTCGGGAACAAT
TACGGTCAGCATCATGGAATACACGTCCTGCTCTACCCATGGTGAATATT
GACTGATGGYAGTGAATAAGAAAGTTAATTTGGATTTGTGGGCCTGCGTT
CTTACTATTCCTACTATTCAACATTATCTTGTCCACCCACCACCGTCTGT
GATGTTCTTCTCCTACTCMCCCTGCCGTTCATGCGTCGTCCCTCTGTATT
CAGCCTATAAAGGACCAGGTTGTATACTTATTATATTAGAGTGAAGAGTC
GTAGTTCTTCTCTCTTTTCCTACCTACCTACTATCCTCTTCTTATACTTT
ATGTAAAAGAGGTTAGGTGTTTATCTTACTTGTTGCGTTCTTCTCATAAA
ACATTGCATTTAGTTGCTCTATCTGAGTTGATATTTCCAACTTTTCCTAT
ACTTTTTCATACGTACTTTTTTGTTTTGTTTATTTTGCTATTCCCCCTTT
TCCTAGCAATTTGTGTCAATATAAAAGAATTGAGCTCCTTAAATGATCAC
GAGCATTGATTCCAATACATTGGGATGTCCCCTCTGTAAATTCAATGCAG
AATGTAATCTAGGTCTGAGGCTACATATTAATGCAGCCCATCCCTCAGAA
TGGGAGGAGTACACCCATAGGCACTATGCTTCAACTACTCCTCCTCATTG
GGATATAATTTCATACAAAGCTCTTGCCTCAATGGCAAAATTCCTCATAA
GGGAACGCCCCCGTGAGGCCGAGCAAAGCATANCATTCATGGTTATCACA
ATTGTTTATCATCCCCTGTGATGAAATAATGAAATTTACACCTACTGAAG
AATATTACAATGTTCTCAAGATGACCCCAATACCATCCTTTAACACTGAG
ACTCGTGAATTCGTGTCCAGCATAAGGGACATGGTCAAATGGAGGGAATA
TGAAATTGACTTAATAACAGAGACTGCTATCCAGTTTACACAGGACTTTC
CTGATGAAACTAATGAGAATATGCATCTCTATGTTTGTAAAAGACTCCAA
TACAGGAGGAAGTGTTCTGTGATAATGAAATTACAGAAACCAAATACCAT
TGAGAAAATTAATTCGGCTCGTTCGTTATACACTAGGTGTTCTGAAACGA
ATGACTATACCGAATTAGTGGTTAAMTCGAATCCTACCCCCTCAGAAGGG
GAGGTCATACCCTTGTCTCAGAGGGTGCCTATTCGTCTCATTGATTTGAA
TATCTCTGAATACACCCCTAGACAAATCATACATACCCCAGAGTCAGGAT
TTAACTATGTTCCATTTATTTTTCATGTTCCCCCTGACATCATGGGACGT
CAACATAAACTCATACAGATGAATGGACGACATACTCAACGAGGTCATCC
CTCTATTCCTATGCCGTCCCAAGATTTGACAACCTTGTCATCTCCATCTC
ATACTCCTAAAACGGCCGGGCTCTTTGTAAATAAAGAAGGCCTTATGAAT
GCCGTAATACGGGCTCTTATGGACTTACCAACTGAAATTTACACCATAAT
ATCAGCCCCGATGAATATACACTGNTTTACCTATCTCCCTTAAGCATTAC
AGTTATCCTTTTCGTGATGCTGCTTTGAGATACCTAAATACAGTATGGCC
TAGTGTGAGAAAGAAATATAACGCCTCACACACAAAAGCCTTCCTTAACA
TCTTAGTTTACCCTGTAAACCTACATTGCTTGCCCATATCTCTTAAGCAT
TACAACTATCCTTTTCGTGATGCTGTTCGGGCTACAAGGGAATACATTAA
GGCCCAGAGGGAGATGCTGATTAAACTTAATGCCTCTCTCACTTAAGCCT
CCTCTTACTTACATATTATATAATTTGTTTCGTTGTATAAATGTTATTAT
TATATAATTGAATACCCTAATATTATATAATTTGTTTCGTATTGTAATTG
TTATTATTACATAACTACTTTCTATTATATAATTACCTACTTGCCTCCCT
ATGAGTATTAACATTACCCTTTTTAATGTTTATGCTTGGTGATACCTGAA
TACCATATGGCCAATGGTTTACTGTTCCCATTGTGAGCGGACTAGTATTC
TTATTGTGCCTCAGATCTTTGGACCCACCCGCTCTGATTATTTTTCGGGC
TATGCTCCTGTGCATAATCTCAGCAAATGGCCCCTTTTTCTTTTCTTCCT
ACCTTTTTCTATATATATCAACCCACTTGATGCTCTATCAGCGATTGTGT
TATGGTTGATTGCAACTATGTTGGAGGATGCCTGTCTCTTTACTAAAGGC
TCCTAGAAATAATACTCCTACCTTACCACCTCCTTCCCTCATGAAGTTCT
ACTCTCTTCCTCTTTTATATAGGTCGTGGATAGGTTGTGGCATCAACAGG
AGAAACAGACTACTTGCTGGTGTTGAAGGAAAATGTGGTCTCATAGATCA
TCAAGACCATGAAGAAGTCTATCACGTACACATTTTAGCACACTGGGCTC
CGGCCCATACTGAAGTTCCCCTCTAGTGATTTCAGACTTACTCATTGATG
TAACATGTAAAAATCTTTACAAGCTCAGAAATGCTATAGATACAATGAAG
CTTAGAAGTATTAAATTTGAAAGAGGATATTCAGAAATGGAGTTGTGCCT
CACAAAATTGAAATCCAATTTATCCATCATTTCTGAACGCCTTTATATTT
TCTGAAATCAAA
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