EMLSAG00000005837, EMLSAG00000005837-688603 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000005837 vs. C. finmarchicus
Match: gi|592936520|gb|GAXK01022033.1| (TSA: Calanus finmarchicus comp337359_c0_seq1 transcribed RNA sequence) HSP 1 Score: 53.1434 bits (126), Expect = 6.345e-7 Identity = 43/136 (31.62%), Postives = 63/136 (46.32%), Query Frame = 0 Query: 176 FKTNPLLYYGYYAQLIQNIRRSSEEEEHXXXXXX------------------------XXXXXXTLGDSTPTPFGAYTSPEARQKIKST----------NEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQ 277 + NP+LYY YYAQ++ ++ + E ++N ++ DS P SP +Q +S ++EPR KRAPRALTGR+VR GT ASPR L +LR+K++ Sbjct: 934 LQYNPILYYSYYAQMLSALQTQQKLLELNTTPPTVPSTNNNNNNNIKDLLSPLRLGGLASLNKESMQDSRPM-----FSPHYQQHSQSPASTMSPGCYKDDEPR-KRAPRALTGRYVRTGTAASPRVLQILRKKVE 1323
BLAST of EMLSAG00000005837 vs. L. salmonis peptides
Match: EMLSAP00000005837 (pep:novel supercontig:LSalAtl2s:LSalAtl2s315:56674:59396:1 gene:EMLSAG00000005837 transcript:EMLSAT00000005837 description:"maker-LSalAtl2s315-snap-gene-0.7") HSP 1 Score: 608.601 bits (1568), Expect = 0.000e+0 Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0 Query: 1 MQDRATENSGVVVDKGKEPFLMSATGLAGSGASAQNLGKRIVKRRRSEDSGGXSSDPRSISPMDLTSKGHSSSSSGQHSPQDLSSGGGGRIHHEQKEEKVKRRRLDDILHRKFPSSSPTTSNAAAHLHHLHHTTPLSSRKRKHPESPCILSEEEEDPSVRAGRFLQLAALMNSDIFKTNPLLYYGYYAQLIQNIRRSSEEEEHKILNKKVNINNNTLGDSTPTPFGAYTSPEARQKIKSTNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLREEAEACRKPPKKSKKSH 300 MQDRATENSGVVVDKGKEPFLMSATGLAGSGASAQNLGKRIVKRRRSEDSGGXSSDPRSISPMDLTSKGHSSSSSGQHSPQDLSSGGGGRIHHEQKEEKVKRRRLDDILHRKFPSSSPTTSNAAAHLHHLHHTTPLSSRKRKHPESPCILSEEEEDPSVRAGRFLQLAALMNSDIFKTNPLLYYGYYAQLIQNIRRSSEEEEHKILNKKVNINNNTLGDSTPTPFGAYTSPEARQKIKSTNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLREEAEACRKPPKKSKKSH Sbjct: 1 MQDRATENSGVVVDKGKEPFLMSATGLAGSGASAQNLGKRIVKRRRSEDSGGXSSDPRSISPMDLTSKGHSSSSSGQHSPQDLSSGGGGRIHHEQKEEKVKRRRLDDILHRKFPSSSPTTSNAAAHLHHLHHTTPLSSRKRKHPESPCILSEEEEDPSVRAGRFLQLAALMNSDIFKTNPLLYYGYYAQLIQNIRRSSEEEEHKILNKKVNINNNTLGDSTPTPFGAYTSPEARQKIKSTNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLREEAEACRKPPKKSKKSH 300
BLAST of EMLSAG00000005837 vs. Select Arthropod Genomes
Match: gb|EEC11111.1| (hypothetical protein IscW_ISCW019608 [Ixodes scapularis]) HSP 1 Score: 74.7146 bits (182), Expect = 4.224e-14 Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 0 Query: 180 PLLYYGYYAQLIQNIRRSSEEEEHKILNKKVN-------INNNTLGDSTPTPFGAYTSPEARQKIKS---TNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLRE 284 P Y YY Q++Q + EH++L + + I LG + P+P S E ++ S T KRAPRALTG+HV+ GTGASP TL LRQKIQER R R+ Sbjct: 329 PFSIYAYYTQIMQRL------HEHELLKRHLEGIAVSAAIPAQALGAARPSPATGLDSVEDSDELASGLDTYNCSMRKRAPRALTGKHVKHGTGASPATLLTLRQKIQERQRARQ 437
BLAST of EMLSAG00000005837 vs. Select Arthropod Genomes
Match: gb|KFM80470.1| (hypothetical protein X975_09057, partial [Stegodyphus mimosarum]) HSP 1 Score: 52.373 bits (124), Expect = 6.724e-7 Identity = 40/104 (38.46%), Postives = 52/104 (50.00%), Query Frame = 0 Query: 181 LLYYGYYAQLIQNIRRSSEEEEHKILNKKVNINNNTLGDSTPTPFGAYTSPEARQKIKSTNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLRE 284 L Y YY QL+Q +R EH +++ +PTP +A++K R RALTG+HVR GTGAS TL LRQKIQER + +E Sbjct: 254 LHVYDYYQQLVQRLR------EHSSTTVRLH------PPISPTPADDDLPSDAQRK-----------RPCRALTGKHVRQGTGASISTLLTLRQKIQERQKAKE 334
BLAST of EMLSAG00000005837 vs. nr
Match: gi|241652329|ref|XP_002410389.1| (hypothetical protein IscW_ISCW019608 [Ixodes scapularis] >gi|215501617|gb|EEC11111.1| hypothetical protein IscW_ISCW019608 [Ixodes scapularis]) HSP 1 Score: 74.7146 bits (182), Expect = 2.067e-11 Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 0 Query: 180 PLLYYGYYAQLIQNIRRSSEEEEHKILNKKVN-------INNNTLGDSTPTPFGAYTSPEARQKIKS---TNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLRE 284 P Y YY Q++Q + EH++L + + I LG + P+P S E ++ S T KRAPRALTG+HV+ GTGASP TL LRQKIQER R R+ Sbjct: 329 PFSIYAYYTQIMQRL------HEHELLKRHLEGIAVSAAIPAQALGAARPSPATGLDSVEDSDELASGLDTYNCSMRKRAPRALTGKHVKHGTGASPATLLTLRQKIQERQRARQ 437
BLAST of EMLSAG00000005837 vs. nr
Match: gi|1070703846|gb|JAT79213.1| (hypothetical protein IscWISCW, partial [Ornithodoros brasiliensis]) HSP 1 Score: 69.3218 bits (168), Expect = 6.884e-11 Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 0 Query: 180 PLLYYGYYAQLIQNIRRSSEEEEHKILNKKVNINNNTLGDSTPTPFGAYTSPEARQKIKSTNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLRE 284 P Y YYAQL+Q + ++H++L + + T TP+P P+ R KRAPRALTG+HV+ GTGASP TL LRQKIQER R +E Sbjct: 34 PWSIYSYYAQLMQRM------QDHEVLKRHLQSGMPT----TPSPREVMDEPDEGVGTLDAFGGIR-KRAPRALTGKHVKQGTGASPATLLTLRQKIQERQRAKE 127 The following BLAST results are available for this feature:
BLAST of EMLSAG00000005837 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000005837 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 1
BLAST of EMLSAG00000005837 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000005837 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000005837 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 2
BLAST of EMLSAG00000005837 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 2
BLAST of EMLSAG00000005837 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s315:56674..59396+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000005837-688603 ID=EMLSAG00000005837-688603|Name=EMLSAG00000005837|organism=Lepeophtheirus salmonis|type=gene|length=2723bp|location=Sequence derived from alignment at LSalAtl2s315:56674..59396+ (Lepeophtheirus salmonis)back to top Add to Basket
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