EMLSAG00000006642, EMLSAG00000006642-689408 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006642
Unique NameEMLSAG00000006642-689408
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000006642 vs. L. salmonis peptides
Match: EMLSAP00000006642 (pep:novel supercontig:LSalAtl2s:LSalAtl2s366:268055:270384:1 gene:EMLSAG00000006642 transcript:EMLSAT00000006642 description:"maker-LSalAtl2s366-augustus-gene-2.6")

HSP 1 Score: 227.639 bits (579), Expect = 1.589e-77
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 
Query:    1 MKLALLSIFILGSLFIQESEGIFLCVMASTSCAYVSCKSGKRNPSDIMFFFSCSTQKCRCAGIAPPPAPAPAPAPAPAPAPAPAPXPAPAPAPAPAPAPAPAPAPAPKGGRRRRDVPIVFDH 122
            MKLALLSIFILGSLFIQESEGIFLCVMASTSCAYVSCKSGKRNPSDIMFFFSCSTQKCRCAGIAPPPAPAPAPAPAPAPAPAPAPXPAPAPAPAPAPAPAPAPAPAPKGGRRRRDVPIVFDH
Sbjct:    1 MKLALLSIFILGSLFIQESEGIFLCVMASTSCAYVSCKSGKRNPSDIMFFFSCSTQKCRCAGIAPPPAPAPAPAPAPAPAPAPAPXPAPAPAPAPAPAPAPAPAPAPKGGRRRRDVPIVFDH 122
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BLAST of EMLSAG00000006642 vs. nr
Match: gi|712890314|gb|KGU37939.1| (hypothetical protein MGK_00723 [Candida albicans P57055])

HSP 1 Score: 67.3958 bits (163), Expect = 1.137e-10
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 0 
Query:   67 PAPAPAPAPAPAPAPAPAPXPAPAPAPAPAPAPAPAPAPAP 107
            PAPAPAPAPAPAPAPAPAP PAPAPAPAPAPAPAPAPAPAP
Sbjct:  570 PAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAPAP 610
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BLAST of EMLSAG00000006642 vs. nr
Match: gi|1006439171|ref|WP_061767796.1| (choline-binding protein [Streptococcus pneumoniae] >gi|987231992|emb|CVL37436.1| pneumococcal surface protein PspA [Streptococcus pneumoniae] >gi|987258271|emb|CVQ66393.1| pneumococcal surface protein PspA [Streptococcus pneumoniae])

HSP 1 Score: 65.4698 bits (158), Expect = 5.492e-10
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0 
Query:   64 APPPAPAPAPAPAPAPAPAPAPXPAPAPAPAPAPAPAPAPAP 105
            AP PAPAPAPAPAPAPAP PAP PAPAPAPAPAPAPAPAP P
Sbjct:  330 APAPAPAPAPAPAPAPAPKPAPAPAPAPAPAPAPAPAPAPKP 371
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BLAST of EMLSAG00000006642 vs. nr
Match: gi|308458680|ref|XP_003091675.1| (hypothetical protein CRE_20578 [Caenorhabditis remanei] >gi|308255402|gb|EFO99354.1| hypothetical protein CRE_20578 [Caenorhabditis remanei])

HSP 1 Score: 58.151 bits (139), Expect = 2.051e-7
Identity = 42/52 (80.77%), Postives = 42/52 (80.77%), Query Frame = 0 
Query:   64 APPPAPAPAPAPAPAPAPAPAPXPAPAP--------APAPAPAPAPAPAPAP 107
            AP PAPAPAPAPAPAPAPAPAP PAPAP        APAPAPAPAPAPAPAP
Sbjct:  235 APAPAPAPAPAPAPAPAPAPAPAPAPAPVPVPQGPQAPAPAPAPAPAPAPAP 286
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006642 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006642 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006642 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000066421.589e-77100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s366:26805... [more]
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BLAST of EMLSAG00000006642 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006642 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006642 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 3
Match NameE-valueIdentityDescription
gi|712890314|gb|KGU37939.1|1.137e-1097.56hypothetical protein MGK_00723 [Candida albicans P... [more]
gi|1006439171|ref|WP_061767796.1|5.492e-1090.48choline-binding protein [Streptococcus pneumoniae]... [more]
gi|308458680|ref|XP_003091675.1|2.051e-780.77hypothetical protein CRE_20578 [Caenorhabditis rem... [more]
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BLAST of EMLSAG00000006642 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s366supercontigLSalAtl2s366:268055..270384 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s366-augustus-gene-2.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006642 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006642EMLSAT00000006642-702489Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s366:268055..270384+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006642-689408 ID=EMLSAG00000006642-689408|Name=EMLSAG00000006642|organism=Lepeophtheirus salmonis|type=gene|length=2330bp|location=Sequence derived from alignment at LSalAtl2s366:268055..270384+ (Lepeophtheirus salmonis)
AAATAAACAAGTGCTTTCAAAGATTCTAGACCTATATAAAGGGATCATTA
GAATACAACAATTCATACATTCAAAATGAAGTTAGCTCTCCTTAGTATCT
TTATTTTGGGCTCCTTGTTTATTCAGGTAAGTTACTAATATTTAAATACA
TTAAGTAATAATTACGCAACTTGGAAATAGTTTCTAATACACTTTATAAA
TACTGTTATAATATATATATGCTTCGCTCGTTACATATTTTTACAAAAAT
GGAATATTAAATTTTTTTTTTGTTTATATCAAATTTATCTTTTTAAATAT
TTCTTTATATTGTAATATAATTTTTGATACTACAATGATCATAGGACATA
GTTATTAGATCATTAAATCCAGTTTAGGTTGTAATCTTTATTAAATCGTT
CAAAATGGTATCKTGCAAAATTCTTATGATGAAATTCTATATTTAGCTCT
CTATTTCCTCAAATCCTTGTTCAAAAAGCCAAAAAGTAGCCATGCTTTTT
TGCAAATTTAAAAAAAATTCACATTTAAAAAAAATAGTTTTCATTTTGTT
GTTATGAGGTCTTTAGGTAAAGGATAAATGGTCAAAAGTGTACATAGACT
GAAGATATATATTATATATTCGTTTATATTATAATTTAACAAGACAATTT
ATAATAATTTGTTTAATATTTTTAGGAGTCGGAAGGAATATTTTTATGTG
TAAGTATGATTCGGTTTATATATACTCGTACACTAATTATTATGCTTTTA
TACTCATGTTGTAAACTGCTACTGCATTAAATTACATTAATGTATGTTTA
TTCTAGTGGCATCCACAAGCTGTGCTTACGTGTCTTGCAAATCCGGGAAA
AGAAATCCAAGTGACATCATGTTTTTTTTTAGTTGTTCTACTCAAAAGTG
CCGATGTGCTGGAATTGCACCGCCACCAGCACCAGCACCAGCCCCTGCAC
CAGCGCCTGCACCAGCGCCTGCACCCGCCCCTSCKCCYGCCCCMGCKCCA
GCSCCTGCKCCTGCKCCAGCKCCTGCACCAGCGCCTGCACCAGCACCAAA
GGGAGGAAGAAGAAGAAGAGACGTACCCATCGTTTTCGATCATTAAAATC
AATCAAAAGATTATTAATCAACATTAATACATTTTCAATTAATATTATAA
CAATTCCACTGAGTCTTTAATAATAAACAATTTCCTTTTCTAAAGCAAAT
ACTTGATATGTATACCATTGTATTTCTTAATTTGGAATTTTTTTTCGAAA
TATTGGGAAGCGGGTTATAGTACAAAAATTTATTTTTATCTAAGAAATGC
AAACATTTAAACAATATCAATATTTTAAGGTTGTGCAAGATGCATCCTTC
TGTAAGTTTCTACTTTAAAAAAAATAATTTTACCGAAAAATAAATAAATA
AAACAAAAAGGGAAATTTGAGAAGAATAATTCAAATAGTATATTCAATTC
TTCCCAAAAAAAGATATTTTTCCATGAAAATCTAAACTTTTTTTGAATTG
CGTTATTCAAAGTGAAAAAATTGTTTATTTTTGTGAAATAAAAAGAAGTT
TAAGAATTTGTTTAATATGCGTAAATATGTAAGTTTTTGGTCTTTGTTTT
AAACTCAATGATGCATTGGCAACCTATTTGGTGCTACCCCACTGGCATAT
AAGTTTATATTATATTTTGTTATCCTTTGTAGATTTTTCTAGTATTGTTA
CCTTATTGTAAATCATACGACCCACGTTTATGCTAAAAACACAGAATTAA
AAAAAAAAAAAAACACGACACCATGATAGTTTTAGAAAACAAGACTATTT
AAAAGGACAAGCTGAGTGATTTTAACTTAAAATATCAATTAAAGGTAGAT
GATGAATCCAAATTTCTTTAATGTGCACAAAATTTTCTACATTTCTCCAA
AATACAATATAACAAATGATGCAAACCTTATTAACTACCCCCTACATTAC
ATGAGTATATAGTAACTTCAAGGTCAGGTGGACTAATTGTAATACTGAAT
TTTTTTTATACGCAATGTAGTGGCCCACAGTCTCATTCACTCACTCAACG
CGGTTCCTGGAGTGACTACGGGCAATATTTGTCTTTGTATTAATAGAGAA
TATAAACTGGCGGTATGATAAAAAAAAACATGGCTAGAGATAATTTCTAA
TACAGGAACAATTGTAAAAAGAATACCGATGTCATTCTGATACGATTCTA
TTAAAAATTCCCGATACCACTACCGATGTTGACACTTTAATATTCTAAAT
AATATATGTTAGAAATATCATTTTGCTATTAGGGGTATCCAAATGATTAT
ATATATATCTATGTTGAGAGCAGAGGTTGG
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