EMLSAT00000006642, EMLSAT00000006642-702489 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000006642
Unique NameEMLSAT00000006642-702489
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AI F316 EMLSAT00000006642 female
  1. PreAdult2
  2. Adult
 -Missing-
-Missing- 		16.01.2017 - 13:06
21.02.2017 - 10:30
EMLSAT00000006642_copepodites both
  1. Copepodid
 -Missing-
-Missing- 		15.08.2017 - 10:05
21.08.2017 - 10:09
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
ExpH - EMLSAT000000006642 Unknown both
  1. Copepodid
  2. Copepodid
 -Missing-
no visible phenotype 		13.05.2018 - 09:51
16.05.2018 - 09:54
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s366supercontigLSalAtl2s366:268055..270384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000006642 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000006642EMLSAG00000006642-689408Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000029095EMLSAE00000029095-738023Lepeophtheirus salmonisexon
EMLSAE00000029096EMLSAE00000029096-738024Lepeophtheirus salmonisexon
EMLSAE00000029097EMLSAE00000029097-738025Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto775589auto775589Lepeophtheirus salmonispolypeptide
EMLSAP00000006642EMLSAP00000006642Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000006642

>EMLSAP00000006642 ID=EMLSAP00000006642|Name=EMLSAP00000006642|organism=Lepeophtheirus salmonis|type=polypeptide|length=122bp
MKLALLSIFILGSLFIQESEGIFLCVMASTSCAYVSCKSGKRNPSDIMFF
FSCSTQKCRCAGIAPPPAPAPAPAPAPAPAPAPAPXPAPAPAPAPAPAPA
PAPAPAPKGGRRRRDVPIVFDH
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mRNA from alignment at LSalAtl2s366:268055..270384+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000006642-702489 ID=EMLSAT00000006642-702489|Name=EMLSAT00000006642|organism=Lepeophtheirus salmonis|type=mRNA|length=2330bp|location=Sequence derived from alignment at LSalAtl2s366:268055..270384+ (Lepeophtheirus salmonis)
AAATAAACAAGTGCTTTCAAAGATTCTAGACCTATATAAAGGGATCATTA
GAATACAACAATTCATACATTCAAAATGAAGTTAGCTCTCCTTAGTATCT
TTATTTTGGGCTCCTTGTTTATTCAGGTAAGTTACTAATATTTAAATACA
TTAAGTAATAATTACGCAACTTGGAAATAGTTTCTAATACACTTTATAAA
TACTGTTATAATATATATATGCTTCGCTCGTTACATATTTTTACAAAAAT
GGAATATTAAATTTTTTTTTTGTTTATATCAAATTTATCTTTTTAAATAT
TTCTTTATATTGTAATATAATTTTTGATACTACAATGATCATAGGACATA
GTTATTAGATCATTAAATCCAGTTTAGGTTGTAATCTTTATTAAATCGTT
CAAAATGGTATCKTGCAAAATTCTTATGATGAAATTCTATATTTAGCTCT
CTATTTCCTCAAATCCTTGTTCAAAAAGCCAAAAAGTAGCCATGCTTTTT
TGCAAATTTAAAAAAAATTCACATTTAAAAAAAATAGTTTTCATTTTGTT
GTTATGAGGTCTTTAGGTAAAGGATAAATGGTCAAAAGTGTACATAGACT
GAAGATATATATTATATATTCGTTTATATTATAATTTAACAAGACAATTT
ATAATAATTTGTTTAATATTTTTAGGAGTCGGAAGGAATATTTTTATGTG
TAAGTATGATTCGGTTTATATATACTCGTACACTAATTATTATGCTTTTA
TACTCATGTTGTAAACTGCTACTGCATTAAATTACATTAATGTATGTTTA
TTCTAGTGGCATCCACAAGCTGTGCTTACGTGTCTTGCAAATCCGGGAAA
AGAAATCCAAGTGACATCATGTTTTTTTTTAGTTGTTCTACTCAAAAGTG
CCGATGTGCTGGAATTGCACCGCCACCAGCACCAGCACCAGCCCCTGCAC
CAGCGCCTGCACCAGCGCCTGCACCCGCCCCTSCKCCYGCCCCMGCKCCA
GCSCCTGCKCCTGCKCCAGCKCCTGCACCAGCGCCTGCACCAGCACCAAA
GGGAGGAAGAAGAAGAAGAGACGTACCCATCGTTTTCGATCATTAAAATC
AATCAAAAGATTATTAATCAACATTAATACATTTTCAATTAATATTATAA
CAATTCCACTGAGTCTTTAATAATAAACAATTTCCTTTTCTAAAGCAAAT
ACTTGATATGTATACCATTGTATTTCTTAATTTGGAATTTTTTTTCGAAA
TATTGGGAAGCGGGTTATAGTACAAAAATTTATTTTTATCTAAGAAATGC
AAACATTTAAACAATATCAATATTTTAAGGTTGTGCAAGATGCATCCTTC
TGTAAGTTTCTACTTTAAAAAAAATAATTTTACCGAAAAATAAATAAATA
AAACAAAAAGGGAAATTTGAGAAGAATAATTCAAATAGTATATTCAATTC
TTCCCAAAAAAAGATATTTTTCCATGAAAATCTAAACTTTTTTTGAATTG
CGTTATTCAAAGTGAAAAAATTGTTTATTTTTGTGAAATAAAAAGAAGTT
TAAGAATTTGTTTAATATGCGTAAATATGTAAGTTTTTGGTCTTTGTTTT
AAACTCAATGATGCATTGGCAACCTATTTGGTGCTACCCCACTGGCATAT
AAGTTTATATTATATTTTGTTATCCTTTGTAGATTTTTCTAGTATTGTTA
CCTTATTGTAAATCATACGACCCACGTTTATGCTAAAAACACAGAATTAA
AAAAAAAAAAAAACACGACACCATGATAGTTTTAGAAAACAAGACTATTT
AAAAGGACAAGCTGAGTGATTTTAACTTAAAATATCAATTAAAGGTAGAT
GATGAATCCAAATTTCTTTAATGTGCACAAAATTTTCTACATTTCTCCAA
AATACAATATAACAAATGATGCAAACCTTATTAACTACCCCCTACATTAC
ATGAGTATATAGTAACTTCAAGGTCAGGTGGACTAATTGTAATACTGAAT
TTTTTTTATACGCAATGTAGTGGCCCACAGTCTCATTCACTCACTCAACG
CGGTTCCTGGAGTGACTACGGGCAATATTTGTCTTTGTATTAATAGAGAA
TATAAACTGGCGGTATGATAAAAAAAAACATGGCTAGAGATAATTTCTAA
TACAGGAACAATTGTAAAAAGAATACCGATGTCATTCTGATACGATTCTA
TTAAAAATTCCCGATACCACTACCGATGTTGACACTTTAATATTCTAAAT
AATATATGTTAGAAATATCATTTTGCTATTAGGGGTATCCAAATGATTAT
ATATATATCTATGTTGAGAGCAGAGGTTGG
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