EMLSAG00000006881, EMLSAG00000006881-689647 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006881
Unique NameEMLSAG00000006881-689647
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
M F107 UN26_g4260 female
  1. PreAdult2
  2. Adult
 No visible phenotype
no visible phenotype 		28.05.2013 - 10:01
02.07.2013 - 00:00
Homology
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BLAST of EMLSAG00000006881 vs. C. finmarchicus
Match: gi|592761815|gb|GAXK01192598.1| (TSA: Calanus finmarchicus comp473679_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 8.161e-1
Identity = 24/107 (22.43%), Postives = 49/107 (45.79%), Query Frame = 0 
Query:   49 DKIDGIVKSRQPLIAALKEFDSKSNW---KSIITDDIVFEAPVLSITGANDFILFVEKFTQYKSEFTVVESLGEYHNAQEIL--------LDWNIKWGIEGLRNFNQ 144
            +++D I+   + L   + + DS   +   + I+ D  V + PV +I  A++F    +  +  KS    V  +   HN  EIL        +++ ++ G++    FN+
Sbjct: 1567 NQVDNIISDLKTLAGPVYDIDSSHKFVEMEKIVADLKVLQGPVYTIERAHNFAEIEKNLSDLKSLNYPVYKIDRQHNFSEILKGIDTLKQMNFPVREGVDYKHQFNE 1887
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BLAST of EMLSAG00000006881 vs. C. finmarchicus
Match: gi|592761816|gb|GAXK01192597.1| (TSA: Calanus finmarchicus comp473679_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 9.452e-1
Identity = 27/113 (23.89%), Postives = 52/113 (46.02%), Query Frame = 0 
Query:   49 DKIDGIVKSRQPLIAALKEFDSKSNW---KSIITDDIVFEAPVLSITGANDFILFVEKFTQYKSEFTVVESLGEYHNAQEIL--------LDWNIKWGIEGLRNFNQHIRFRV 150
            +++D I+   + L   + + DS   +   + I+ D  V + PV +I  A++F    +  +  KS    V  +   HN  EIL        +++ ++ G++    FN+ I  RV
Sbjct: 2741 NQVDNIISDLKTLAGPVYDIDSSHKFVEMEKIVADLKVLQGPVYTIERAHNFAEIEKNLSDLKSLNYPVYKIDRQHNFSEILKGIDTLKQMNFPVREGVDYKHQFNE-IERRV 3076
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BLAST of EMLSAG00000006881 vs. C. finmarchicus
Match: gi|592765679|gb|GAXK01188889.1| (TSA: Calanus finmarchicus comp361910_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 3.235e+0
Identity = 17/39 (43.59%), Postives = 24/39 (61.54%), Query Frame = 0 
Query:    5 RSLVNVFVATIGVFIYFTAHTIYQVEVATPGAPSLDDWP 43
            +SLV+V   T+G  I+   H+IY V + +P  PS  DWP
Sbjct:  910 KSLVDV---TLGTKIHM-EHSIYIVNLRSPHVPSSPDWP 1014
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BLAST of EMLSAG00000006881 vs. C. finmarchicus
Match: gi|592765680|gb|GAXK01188888.1| (TSA: Calanus finmarchicus comp361910_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 4.645e+0
Identity = 17/39 (43.59%), Postives = 24/39 (61.54%), Query Frame = 0 
Query:    5 RSLVNVFVATIGVFIYFTAHTIYQVEVATPGAPSLDDWP 43
            +SLV+V   T+G  I+   H+IY V + +P  PS  DWP
Sbjct:  910 KSLVDV---TLGTKIHM-EHSIYIVNLRSPHVPSSPDWP 1014
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BLAST of EMLSAG00000006881 vs. C. finmarchicus
Match: gi|592872992|gb|GAXK01084570.1| (TSA: Calanus finmarchicus comp4809884_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 4.803e+0
Identity = 12/21 (57.14%), Postives = 17/21 (80.95%), Query Frame = 0 
Query:   64 ALKEFDSKSNWKSIITDDIVF 84
            ALKEF +KS+W S +T+D+ F
Sbjct:  189 ALKEFSTKSDWMSQVTEDLKF 251
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BLAST of EMLSAG00000006881 vs. L. salmonis peptides
Match: EMLSAP00000006881 (pep:novel supercontig:LSalAtl2s:LSalAtl2s389:580695:584330:1 gene:EMLSAG00000006881 transcript:EMLSAT00000006881 description:"maker-LSalAtl2s389-augustus-gene-5.25")

HSP 1 Score: 413.305 bits (1061), Expect = 4.150e-148
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 
Query:    1 MGVIRSLVNVFVATIGVFIYFTAHTIYQVEVATPGAPSLDDWPVSFNKDKIDGIVKSRQPLIAALKEFDSKSNWKSIITDDIVFEAPVLSITGANDFILFVEKFTQYKSEFTVVESLGEYHNAQEILLDWNIKWGIEGLRNFNQHIRFRVFIESPNKIFKIVEEWNGNPLLNEKTTNGFLGKFHSKFRMYTGQMLVMLMKIK 202
            MGVIRSLVNVFVATIGVFIYFTAHTIYQVEVATPGAPSLDDWPVSFNKDKIDGIVKSRQPLIAALKEFDSKSNWKSIITDDIVFEAPVLSITGANDFILFVEKFTQYKSEFTVVESLGEYHNAQEILLDWNIKWGIEGLRNFNQHIRFRVFIESPNKIFKIVEEWNGNPLLNEKTTNGFLGKFHSKFRMYTGQMLVMLMKIK
Sbjct:    1 MGVIRSLVNVFVATIGVFIYFTAHTIYQVEVATPGAPSLDDWPVSFNKDKIDGIVKSRQPLIAALKEFDSKSNWKSIITDDIVFEAPVLSITGANDFILFVEKFTQYKSEFTVVESLGEYHNAQEILLDWNIKWGIEGLRNFNQHIRFRVFIESPNKIFKIVEEWNGNPLLNEKTTNGFLGKFHSKFRMYTGQMLVMLMKIK 202
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BLAST of EMLSAG00000006881 vs. nr
Match: gi|919087381|ref|XP_013380775.1| (PREDICTED: uncharacterized protein LOC106151886 isoform X1 [Lingula anatina])

HSP 1 Score: 60.077 bits (144), Expect = 8.335e-8
Identity = 50/208 (24.04%), Postives = 99/208 (47.60%), Query Frame = 0 
Query:    7 LVNVFVAT-IGVFIYFTAHTIYQVEVATPGAPSLDDWPVSFNKDKIDGIVKSRQPLIAALKE-FDSKSNWKSI--ITDDIVFEAPVLSITGANDF---ILFVEKFTQYKSEFTVVESLGEYHNAQEILLDWNIKWGIEGLRNFNQHIRFRVFIESP-----NKIFKIVEEWNGNPLLNEKTTNGFLGKFHSKFRMYTGQMLVMLMKIK 202
            +V++ + T I  F   T+H +Y +  A   A    +W VS  + + + +VK+R+ L+  ++E + + +   S+  ++DD++FE PV+   G  +    I  ++K  +  S    VE     H   E+ +D  +K+ + G R+F       + +         ++  + EE+   PLLN + ++  LG  H+  + + G +   L K K
Sbjct:    3 VVSLLIGTPILAFTGVTSHLLYHLRYAPKKAMPAPNWDVS--ESERETVVKNREGLLKGIQEVYAATATVDSLKHVSDDVIFEDPVVKFYGKRELSCVIPIMKKSLKASSATQTVEKFQTVHGENEMYVDMCVKFTL-GSRSFTLPSLVSIMLRKKATGEGEEVVHMTEEYLWKPLLN-RDSSLILGACHAAMKRFNGIICAKLFKYK 206
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006881 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006881 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592761815|gb|GAXK01192598.1|8.161e-122.43TSA: Calanus finmarchicus comp473679_c0_seq2 trans... [more]
gi|592761816|gb|GAXK01192597.1|9.452e-123.89TSA: Calanus finmarchicus comp473679_c0_seq1 trans... [more]
gi|592765679|gb|GAXK01188889.1|3.235e+043.59TSA: Calanus finmarchicus comp361910_c1_seq2 trans... [more]
gi|592765680|gb|GAXK01188888.1|4.645e+043.59TSA: Calanus finmarchicus comp361910_c1_seq1 trans... [more]
gi|592872992|gb|GAXK01084570.1|4.803e+057.14TSA: Calanus finmarchicus comp4809884_c0_seq1 tran... [more]
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BLAST of EMLSAG00000006881 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000068814.150e-148100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s389:58069... [more]
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BLAST of EMLSAG00000006881 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006881 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006881 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|919087381|ref|XP_013380775.1|8.335e-824.04PREDICTED: uncharacterized protein LOC106151886 is... [more]
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BLAST of EMLSAG00000006881 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s389supercontigLSalAtl2s389:580695..584330 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s389-augustus-gene-5.25
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006881 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006881EMLSAT00000006881-702728Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s389:580695..584330+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006881-689647 ID=EMLSAG00000006881-689647|Name=EMLSAG00000006881|organism=Lepeophtheirus salmonis|type=gene|length=3636bp|location=Sequence derived from alignment at LSalAtl2s389:580695..584330+ (Lepeophtheirus salmonis)
GCAAAATTAACCTCATTTTTTTGTCGTATATCAGATTATATGCCTGGTTT
GCTGCATACTTTTTCCATAATCGGAACTTGTTCTCTCTCAGTTCTCGGAT
GACATCATAATAGTAAAAGTAAATATCTTTGGTATTTATTGAATACTTAC
ATATAATGGGGGATGTGATAGAATGACCTTACTCATTATATTTGGATTAA
ATTATACATTGTTAAATTTTTAGAACGACTTACTCAATAACTAGGTACAT
ATTTTAAGATTGCTTCTAGAACAGAGGTAATTTTAATTAAAACTAAGATC
TAAAAGTTTTGTGTACATACATTTTACAGAGACCTAATTCAGAAAACTAA
AAGTTGATTTCAGGAAAAACTTATAGCATAACAAATTAACTATTTTTTTA
AATTATATAATGAAACATTGAAACGGGTAATATAAAGTTATATATTGTAT
TTTTTATCGTCTTTTATGTAAATTAACCTTATGTAGAAAAGCATAATTAC
TCTAGCATTAACTCTGCATAAATATCACTTTTAACATATATTCGAATTAC
CTAATATATTATTAAAAAAGTTTAAAACAAAAACTTTTTAAATATTTTTA
ACAAACAAGAATTAATAATATAAGATCAAAAATACCGGCTCTTTTTCTAT
TTATATTTTAGTTACTATAAGATACAACATGCAATTGAGTTATTAATTAT
CATCAATTTAGTTTTATGTTGTGAAAAATAAAAAACCCGTTGTTTATAGT
ATTAATTATTCGTTTGAAATTGATCAACCTTGCCTAATCCATTACTTCTG
TGCCTCTCATACTTTTTTTTTCTTCTATTCTCTTGGCCAATTAATAAAAT
AAGTAACAAAAAACACCCAGGACCGGGTTTAAGGCACTGGTACAGGTGCT
ACATGTCAGACTAAAATCTTGTTGTCAAATTGGTTTTGTCAAAAAATATG
AAAATATTGTAAAAATTTGGTCACAATTTGAAATTAATAATATTCATTGT
TGTCATTTTTTATTTTTTTTTTAATTTTTCTTTGAATGGTCAAAAAAAGC
TTTAAAAAAACATTCTGTCAAAAAGTGCCCCTTTTTTTTAAAGGACCTAA
AAAAATAGAGATAATTTTTTTAATATGTAAAATTTATAACACATATTTTT
ACTTACGCTAAAACGGCTCCTGAGCAAACCGTTGTACACATTTTTTGGGT
CTTATTTACCTATAAATAACATAAATGTTGGAACGCAATCAGTTATTCTC
CTTAGTGCACAGGTTGAGAAATAATGGACCAGCACTACATACTCCTAAAG
AAACTAAATTTCTTCAGTACGAGTTGTACGACATTTTTGATCAATTATTA
TCTTTAGAGAATATTAATTTACATATAATTATTAATAAGTGATTTAAATT
ATGATTCTAATAATAATTTCAGTTTTTATTTGTATTATTGTGCATTTAAT
CAAAATCTTGAAATTGGCTTAATTGTGTGAGCTACCCAACTTTTACTGTC
GGTTTTTAATTTGTTTCTAGATGCAGTTTTAGCATTCAAAGAACCACTAA
ATAAGGACTTGACTGATATATTAGGAAGTCGATTAATTCGACCAATTACA
GGTAGCTTTCAGTATTTAAACATTGGTTACCAAAATTATTTATTACCCAT
ATTTTAGTTCCATATATTTCGAGATCCACTTTTTAATAATTGAATAAGCT
AAATCAAGAGTTTTTTTTTGCAAAAACAACAACAACAACAAATTATTTTT
TTAAATTATTTAATCATTGAAATCACAAATATGGTTGGTATATCCATTTT
TGAAAGTTCTGTCAACCTTGGTATATATTTTTTACTTTGACAATCAATTT
AATCTAGGATCAACTATTGTTATTTTTACGATTTTTTTCAAAATGAATCG
TCTTTATTTGCCAAAGAAACAACAACTAAAGACTGCACAAAATTCTATGT
TTTGCCTTAAATAAAATAAAACTGAATCATCAATTCAAAAATGATCATAA
GTTAAGTTCTAGGATGATCAAAATATTGGCAGATAATGCCAGTCTTGAGT
AAAATTATGCACTTGCCGATGTGGGCATGATTGGAGTTTAATTCAATTAT
GTTTAATAGGATCTCAATTTTTTTTGAAATCTTGAATAGTAAATATTGGT
CCATAAAATTCGATATGGATCGCACCCTAATTCTAACATCTCCAATTTAT
CTATTAATTATAGATAACACTTTGGTGCAAGATAAATAACAGAATTGGGG
AAAATTGCTTATACTGTAAGTCGTCCAAATCAAGTCTCGAGTCCAAGAAG
TTCCGTCTTCTGATAAATAGGCTAGATATATCAATACATATATATTATTT
AATGACATAAATCATAATAGAGCATATTTAAACCAATTAAAAATAAGATG
CAATGTGGCTTMAATACCAATTATCTCCAGATAATCCATTTTTGTATGAA
TATAATATTATTCTCCAATGTATGTATTTAATATATATTACAGTTACTTT
GTTTATCTTTAATTATAATAAAATAAGTTTGTATTTGAATTCATTTTAAT
AAATAAATCCATGGCACTATGTGTTTTTTTTTAGAAAGTTGCGCAACTGA
ATTCAGTGAGTAATAAAGGAAGAGAGAAAATTAAAACTTATCTCCGTCCG
TATGATGTCAAAATAGTATTGATATTATGTGTACATAGAGACAGTTGATC
GGATATTATGTTTTCCATATTACATATTCCATGTTATCAGCTGAAAAATA
CAAGAGAGAAGTTGAAGTTGAAAGAGAGAGTTTCCTGTTGGTTTCCTGCT
ACATCGGCTTCTGAATAAATATTATTATTGTAATAATTATTTCATTATTT
CATATTTATCAAGCTAATACAATATTATCAAATCATGGGAGTTATAAGGT
CATTAGTTAATGTTTTTGTTGCAACTATCGGTGTCTTCATATACTTCACT
GCTCATACCATTTATCAAGTTGAAGTAGCTACTCCKGGAGCTCCTTCGTT
GGATGATTGGCCCGTAAGCTTTAATAAAGATAAAATAGACGGTATTGTAA
AGAGTCGGCAACCCTTAATAGCAGCTCTCAAGGTAATCTTTCAAATTATA
TCAAAACATTGCATTTGTTTTATCTATTATTCATATTTTAGGAGTTCGAT
TCAAAGTCAAACTGGAAATCTATTATTACTGATGATATTGTTTTCGAAGC
TCCAGTGTTAAGCATTACAGGAGCAAATGATTTTATTCTATTTGTTGAAA
AATTTACGCAATATAAAAGTGAATTTACTGTTGTTGAATCACTAGGAGAG
TATCACAACGCACAAGAAATTTTACTTGACTGGAACATCAAATGGGGGAT
TGAAGGACTTAGAAATTTTAATCAACACATTCGATTCCGTGTATTTATTG
AATCTCCCAATAAAATATTTAAAATTGTTGAGGAGTGGAATGGTAACCCT
TTGTTGAATGAAAAAACGACTAATGGGTTCTTAGGAAAATTTCATTCCAA
GTTTCGTATGTATACTGGTCAGATGCTTGTTATGTTGATGAAAATTAAAT
GAGATTATAGAAGTACATTTTCGATTATTTTAAATTAATTATTCTCTATT
ATATATATCTTTGTAGAATAAAATATATTTTTGTAT
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