EMLSAG00000008008, EMLSAG00000008008-690774 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592777648|gb|GAXK01176920.1| (TSA: Calanus finmarchicus comp140199_c1_seq1 transcribed RNA sequence) HSP 1 Score: 59.3066 bits (142), Expect = 1.286e-10 Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0 Query: 66 PWCDPKDPMGAWMNYINVRKWCAENGYTNFGPYGGVPSDD 105 PWC+P DPMGAW+N+ NVR WC G+ PYGG S++ Sbjct: 599 PWCNPTDPMGAWLNFQNVRDWCIGEGFEELSPYGGSASEE 718
BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592813914|gb|GAXK01140654.1| (TSA: Calanus finmarchicus comp1750507_c0_seq1 transcribed RNA sequence) HSP 1 Score: 45.0542 bits (105), Expect = 2.281e-6 Identity = 16/36 (44.44%), Postives = 24/36 (66.67%), Query Frame = 0 Query: 65 HPWCDPKDPMGAWMNYINVRKWCAENGYTNFGPYGG 100 H CD +GA++N++ +K+C E T+FGPYGG Sbjct: 274 HNGCDHTTNIGAFLNFLQFKKFCVEKEVTDFGPYGG 381
BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592831975|gb|GAXK01125569.1| (TSA: Calanus finmarchicus comp24127_c1_seq2 transcribed RNA sequence) HSP 1 Score: 45.0542 bits (105), Expect = 2.302e-6 Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 0 Query: 65 HPWCDPKDPMGAWMNYINVRKWCA-ENGYTNFGPYGGVP 102 H CD K +G ++ + RKWCA E G T+FGPYGGVP Sbjct: 105 HNGCDWKTNIGGFLTFCKWRKWCADEKGVTDFGPYGGVP 221
BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592883729|gb|GAXK01074646.1| (TSA: Calanus finmarchicus comp2285411_c0_seq1 transcribed RNA sequence) HSP 1 Score: 44.669 bits (104), Expect = 1.029e-5 Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 0 Query: 65 HPWCDPKDPMGAWMNYINVRKWCA-ENGYTNFGPYGGVP 102 H CD K +G ++ + RKWCA E G T+FGPYGGVP Sbjct: 302 HNGCDWKKNIGDFLTFCKWRKWCADEQGVTDFGPYGGVP 418
BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592831976|gb|GAXK01125568.1| (TSA: Calanus finmarchicus comp24127_c1_seq1 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 4.021e-4 Identity = 19/35 (54.29%), Postives = 22/35 (62.86%), Query Frame = 0 Query: 68 CDPKDPMGAWMNYINVRKWCAENGYTNFGPYGGVP 102 CDP +G ++ RK CAE YTNFG YGGVP Sbjct: 117 CDPATNIGGFLINKLWRKKCAELEYTNFGGYGGVP 221
BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592839732|gb|GAXK01117812.1| (TSA: Calanus finmarchicus comp1236662_c0_seq2 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 3.376e-2 Identity = 12/32 (37.50%), Postives = 19/32 (59.38%), Query Frame = 0 Query: 68 CDPKDPMGAWMNYINVRKWCAENGYTNFGPYG 99 CDP +G ++ + ++ WC E G +FG YG Sbjct: 160 CDPATGVGGFLIFPMLKAWCEEAGVADFGVYG 255
BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592839733|gb|GAXK01117811.1| (TSA: Calanus finmarchicus comp1236662_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 4.328e-2 Identity = 12/32 (37.50%), Postives = 19/32 (59.38%), Query Frame = 0 Query: 68 CDPKDPMGAWMNYINVRKWCAENGYTNFGPYG 99 CDP +G ++ + ++ WC E G +FG YG Sbjct: 224 CDPATGVGGFLIFPLLKAWCEEAGVADFGVYG 319
BLAST of EMLSAG00000008008 vs. L. salmonis peptides
Match: EMLSAP00000008008 (pep:novel supercontig:LSalAtl2s:LSalAtl2s475:416557:418035:1 gene:EMLSAG00000008008 transcript:EMLSAT00000008008 description:"augustus_masked-LSalAtl2s475-processed-gene-4.1") HSP 1 Score: 220.32 bits (560), Expect = 5.470e-75 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 Query: 1 MKLLFVLLVTLLSVAVFLPQEGESAPXGGRGGGXRSRPRSGRQGYDNGATEGNGAEQEEEEGPEHPWCDPKDPMGAWMNYINVRKWCAENGYTNFGPYGGVPSDDQEEA 109 MKLLFVLLVTLLSVAVFLPQEGESAPXGGRGGGXRSRPRSGRQGYDNGATEGNGAEQEEEEGPEHPWCDPKDPMGAWMNYINVRKWCAENGYTNFGPYGGVPSDDQEEA Sbjct: 1 MKLLFVLLVTLLSVAVFLPQEGESAPXGGRGGGXRSRPRSGRQGYDNGATEGNGAEQEEEEGPEHPWCDPKDPMGAWMNYINVRKWCAENGYTNFGPYGGVPSDDQEEA 109
BLAST of EMLSAG00000008008 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold632_size121914-snap-gene-0.24 (protein:Tk02604 transcript:maker-scaffold632_size121914-snap-gene-0.24-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_316118") HSP 1 Score: 70.8626 bits (172), Expect = 5.285e-16 Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 0 Query: 67 WCDPKDPMGAWMNYINVRKWCAENGYTNFGPYGGVPSDD 105 WC+P PMGAW+N+ N++ WCA++G+T FGPYGGVP+ D Sbjct: 313 WCNPIKPMGAWLNFRNMKIWCADHGFTKFGPYGGVPTKD 351 The following BLAST results are available for this feature:
BLAST of EMLSAG00000008008 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000008008 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 7
BLAST of EMLSAG00000008008 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000008008 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000008008 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000008008 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000008008 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s475:416557..418035+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000008008-690774 ID=EMLSAG00000008008-690774|Name=EMLSAG00000008008|organism=Lepeophtheirus salmonis|type=gene|length=1479bp|location=Sequence derived from alignment at LSalAtl2s475:416557..418035+ (Lepeophtheirus salmonis)back to top Add to Basket
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