EMLSAG00000008995, EMLSAG00000008995-691761 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008995
Unique NameEMLSAG00000008995-691761
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008995 vs. C. finmarchicus
Match: gi|592819302|gb|GAXK01135266.1| (TSA: Calanus finmarchicus comp241881_c33_seq47 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 5.754e-1
Identity = 28/100 (28.00%), Postives = 43/100 (43.00%), Query Frame = 0 
Query:    4 GHPVLPTLTKHPSCLEVISKAQLPVIAVSFKSCKKKMSAQFIGRSPELSSFLLLKGRMKGHGQRGWMCMNITSSEYMEKIKYCNGYRIFSSKSNKTKESM 103
            GHP LP     PSC       Q P    S++S    +S+Q +     L + L LK R+    ++ W  +      ++  IKY         +S+K KES+
Sbjct:   48 GHPALPPCGTDPSC-----PCQAPPPRESWRS*PAPLSSQALTIFTSLETVLTLKDRVV--SEQVWASVE----NFLLAIKY-------EVQSDKVKESI 293
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BLAST of EMLSAG00000008995 vs. C. finmarchicus
Match: gi|592777592|gb|GAXK01176976.1| (TSA: Calanus finmarchicus comp141279_c46_seq19 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.045e+0
Identity = 19/67 (28.36%), Postives = 35/67 (52.24%), Query Frame = 0 
Query:   40 MSAQFIGRSPELSSFLLLKGRMKGHGQRGWMCMN-------ITSSEYMEKIKYCNGYRIFSSKSNKT 99
            +++ ++  S   SSF L+      H  R W+ MN       + SS  + KI++ N ++++ SK +KT
Sbjct:   38 LTSYYLALSHTFSSFPLIHRLSFIHSLRNWIKMNFKLKI*LLQSS--LNKIEFVNSFQLYFSKLSKT 232
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BLAST of EMLSAG00000008995 vs. C. finmarchicus
Match: gi|592777622|gb|GAXK01176946.1| (TSA: Calanus finmarchicus comp141279_c31_seq16 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.181e+0
Identity = 19/67 (28.36%), Postives = 35/67 (52.24%), Query Frame = 0 
Query:   40 MSAQFIGRSPELSSFLLLKGRMKGHGQRGWMCMN-------ITSSEYMEKIKYCNGYRIFSSKSNKT 99
            +++ ++  S   SSF L+      H  R W+ MN       + SS  + KI++ N ++++ SK +KT
Sbjct:  139 LTSYYLALSHTFSSFPLIHRLSFIHSLRNWIKMNFKLKI*LLQSS--LNKIEFVNSFQLYFSKLSKT 333
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BLAST of EMLSAG00000008995 vs. C. finmarchicus
Match: gi|592777631|gb|GAXK01176937.1| (TSA: Calanus finmarchicus comp141279_c31_seq7 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.470e+0
Identity = 19/67 (28.36%), Postives = 35/67 (52.24%), Query Frame = 0 
Query:   40 MSAQFIGRSPELSSFLLLKGRMKGHGQRGWMCMN-------ITSSEYMEKIKYCNGYRIFSSKSNKT 99
            +++ ++  S   SSF L+      H  R W+ MN       + SS  + KI++ N ++++ SK +KT
Sbjct:  241 LTSYYLALSHTFSSFPLIHRLSFIHSLRNWIKMNFKLKI*LLQSS--LNKIEFVNSFQLYFSKLSKT 435
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BLAST of EMLSAG00000008995 vs. L. salmonis peptides
Match: EMLSAP00000008995 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5641:3040:4160:-1 gene:EMLSAG00000008995 transcript:EMLSAT00000008995 description:"maker-LSalAtl2s5641-snap-gene-0.3")

HSP 1 Score: 273.863 bits (699), Expect = 2.357e-95
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:    1 MKKGHPVLPTLTKHPSCLEVISKAQLPVIAVSFKSCKKKMSAQFIGRSPELSSFLLLKGRMKGHGQRGWMCMNITSSEYMEKIKYCNGYRIFSSKSNKTKESMGTANIIVNDSLAKTLLKSDFFFRILGGVES 133
            MKKGHPVLPTLTKHPSCLEVISKAQLPVIAVSFKSCKKKMSAQFIGRSPELSSFLLLKGRMKGHGQRGWMCMNITSSEYMEKIKYCNGYRIFSSKSNKTKESMGTANIIVNDSLAKTLLKSDFFFRILGGVES
Sbjct:    1 MKKGHPVLPTLTKHPSCLEVISKAQLPVIAVSFKSCKKKMSAQFIGRSPELSSFLLLKGRMKGHGQRGWMCMNITSSEYMEKIKYCNGYRIFSSKSNKTKESMGTANIIVNDSLAKTLLKSDFFFRILGGVES 133
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BLAST of EMLSAG00000008995 vs. L. salmonis peptides
Match: EMLSAP00000001695 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1293:131921:133062:-1 gene:EMLSAG00000001695 transcript:EMLSAT00000001695 description:"maker-LSalAtl2s1293-snap-gene-0.20")

HSP 1 Score: 57.3806 bits (137), Expect = 2.558e-11
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:   72 MNITSSEYMEKIKYCNGYRIFSSKSNKTKESMGTANIIVNDSLAKTLL 119
            MN+  SE+MEKI   +G  IFS KS+KTKESMG A IIVND LAK LL
Sbjct:    1 MNLMCSEFMEKIVDHHGSWIFSIKSHKTKESMGPAKIIVNDGLAKKLL 48
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BLAST of EMLSAG00000008995 vs. L. salmonis peptides
Match: EMLSAP00000000579 (pep:novel supercontig:LSalAtl2s:LSalAtl2s10987:7:1255:1 gene:EMLSAG00000000579 transcript:EMLSAT00000000579 description:"snap_masked-LSalAtl2s10987-processed-gene-0.0")

HSP 1 Score: 46.9802 bits (110), Expect = 2.836e-8
Identity = 19/28 (67.86%), Postives = 23/28 (82.14%), Query Frame = 0 
Query:   61 MKGHGQRGWMCMNITSSEYMEKIKYCNG 88
            ++ HGQRGW CMN+TSS YMEKI+  NG
Sbjct:   24 LEDHGQRGWTCMNLTSSGYMEKIEDRNG 51
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008995 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008995 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592819302|gb|GAXK01135266.1|5.754e-128.00TSA: Calanus finmarchicus comp241881_c33_seq47 tra... [more]
gi|592777592|gb|GAXK01176976.1|1.045e+028.36TSA: Calanus finmarchicus comp141279_c46_seq19 tra... [more]
gi|592777622|gb|GAXK01176946.1|1.181e+028.36TSA: Calanus finmarchicus comp141279_c31_seq16 tra... [more]
gi|592777631|gb|GAXK01176937.1|1.470e+028.36TSA: Calanus finmarchicus comp141279_c31_seq7 tran... [more]
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BLAST of EMLSAG00000008995 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000089952.357e-95100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s5641:3040... [more]
EMLSAP000000016952.558e-1166.67pep:novel supercontig:LSalAtl2s:LSalAtl2s1293:1319... [more]
EMLSAP000000005792.836e-867.86pep:novel supercontig:LSalAtl2s:LSalAtl2s10987:7:1... [more]
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BLAST of EMLSAG00000008995 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008995 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008995 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008995 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s5641supercontigLSalAtl2s5641:3040..4160 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s5641-snap-gene-0.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008995 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008995EMLSAT00000008995-704842Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s5641:3040..4160-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008995-691761 ID=EMLSAG00000008995-691761|Name=EMLSAG00000008995|organism=Lepeophtheirus salmonis|type=gene|length=1121bp|location=Sequence derived from alignment at LSalAtl2s5641:3040..4160- (Lepeophtheirus salmonis)
ATGAAAAAAGGTCATCCTGTTCTCCCCACACTAACTAAGCATCCGTCATG
CCTAGAAGGTAAGTTAGTTTGTTATATGTCGTAATCAATTTATTACTATT
TAATTTTATTTACAGTTATATCAAAAGCACAATTGCCTGTAATTGCAGTG
TCTTTTAAAAGCTGCAAAAAGAAAATGTCAGCCCAATTTATTGGTCGATC
GTAAGTCCAGGAAGGTGGGAACGAAAAAACGTAAATGTAAGTTCGACTAA
ATTATAAATGCAATAACTATTATTATCATTTCTATAGCCCTGAACTTTCG
TCTTTTCTGCTTTTGAAAGGAAGAATGAAGGTACTTATTAAATCAAGGTA
AACATATTGCAAATCTGTTAATCAAATTATTTATTATTTTATAGGAAGTA
CTCTTCTCAATATGGTTCCGGCTCGTCAAAGGAGCCAGAACAAGGAAGGA
TATCTGATCCTTTTGCTTCTAAGCCGGACATTGTTTCTCAGCGTCCTATC
AAGTGGAAGGAAAATCCCAGGTGGACGAGCACCAGGTCTTGCAAGTTCCT
TGTGATGCATCATCAGCTACACTAGGAACTAAAAGATGTAAGATTATTAT
TATTATGCTTATCATCGTAATTAATTAATTTATATGATTTATTATAGGCA
ATTGGTAATGATGCAAATCCCATCCTGATGGAAATGAGTCATCATATTCT
ACTTAACTTCAATATCGAAGGATGCAGGCAGGGAAGGTTGCAAGGATAGC
ACAGAAATAGACCTTTTGACATGGTCATCCTCCTGACTCAATCCCGTCGA
TCTTCACAACTAGCTAAGGCTGTGCAAAATATGACTCAGCAGGATCAGGA
GAATTTGCCGGTAACTCTAGTAAGAGACAGGGCATTGCTCTTTTACTTTT
AAGAGGGTCACGGTCAAAGGGGATGGATGTGCATGAATATCACGTCTTCT
GAGTATATGGAAAAGATTAAGTACTGTAATGGGTACCGGATCTTTTCATC
TAAGTCAAATAAGACCAAGGAATCTATGGGTACTGCTAATATCATAGTAA
ATGATAGCCTAGCAAAGACACTTCTCAAGTCTGATTTCTTCTTTCGTATT
CTGGGTGGAGTGGAATCGTAA
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