EMLSAG00000010399, EMLSAG00000010399-693165 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000010399 vs. C. finmarchicus
Match: gi|592753363|gb|GAXK01201050.1| (TSA: Calanus finmarchicus comp6116701_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 4.331e-1 Identity = 17/54 (31.48%), Postives = 29/54 (53.70%), Query Frame = 0 Query: 81 GIQLKLESEKCEDYQQSLGKCTESNYLEDSKTSYPTTPVYSPNSEVSIDNVLVH 134 +++KL C D + LGKC +SNY+ S P Y+ NS +++++ H Sbjct: 323 AMRIKLHQPSCSDSEWELGKCYQSNYMNFSGDY--RLPDYNDNSYRHVEDIIKH 478
BLAST of EMLSAG00000010399 vs. C. finmarchicus
Match: gi|592872998|gb|GAXK01084564.1| (TSA: Calanus finmarchicus comp4808697_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 6.929e+0 Identity = 15/40 (37.50%), Postives = 19/40 (47.50%), Query Frame = 0 Query: 80 KGIQLKLESEKCEDYQQSLGKCTESNYLEDSKTSYPTTPV 119 K I + + KCE + G CT YL DSKT P+ Sbjct: 68 KAISVHDCASKCEFFNTQNGSCTALQYLTDSKTCSLFVPI 187
BLAST of EMLSAG00000010399 vs. C. finmarchicus
Match: gi|592839778|gb|GAXK01117766.1| (TSA: Calanus finmarchicus comp1236129_c0_seq4 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 9.873e+0 Identity = 22/64 (34.38%), Postives = 30/64 (46.88%), Query Frame = 0 Query: 173 PSVRKKQKAQYRLNRSLPMSIIDSKLSSTCSCDKDLSYGPISISKNEQSECLSKDRAPKGKSLY 236 PS K Q+A N L +II+ L D YG I I +N + + KD+ K KSL+ Sbjct: 466 PSFDKFQRA----NEILHGNIIEKHLIKDDKISNDNEYGEIVIKENIEDDSQHKDKNSKIKSLH 645
BLAST of EMLSAG00000010399 vs. L. salmonis peptides
Match: EMLSAP00000010399 (pep:novel supercontig:LSalAtl2s:LSalAtl2s68:348363:350705:1 gene:EMLSAG00000010399 transcript:EMLSAT00000010399 description:"maker-LSalAtl2s68-augustus-gene-3.29") HSP 1 Score: 904.82 bits (2337), Expect = 0.000e+0 Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0 Query: 1 MSYSSYSSKTLAKQDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSALVNPEEAKKGIQLKLESEKCEDYQQSLGKCTESNYLEDSKTSYPTTPVYSPNSEVSIDNVLVHKRHKDNENLDSDVETXHCRSFIQNSSSGSRLSLLYRNTPSVRKKQKAQYRLNRSLPMSIIDSKLSSTCSCDKDLSYGPISISKNEQSECLSKDRAPKGKSLYTYNPYSKGMEPNYNHYSMDSRYGYEEGDVLNKKNDAGMTPARSSEFRRPGDEGKIYRILNVEKQLTYVPEVSPNKFCKPNAVIKRYRTVENPITECESSKYFTGFEKVFPNPLTNLSIFFKKKETIPPRIETKIRTTMVSEIVDRKEVGNDAYKNFIDTHEIDEEIPIHFTKLSKKQIEKNDPRILRVAXVITVXQXKKVTPEQLRNRF 445 MSYSSYSSKTLAKQDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSALVNPEEAKKGIQLKLESEKCEDYQQSLGKCTESNYLEDSKTSYPTTPVYSPNSEVSIDNVLVHKRHKDNENLDSDVETXHCRSFIQNSSSGSRLSLLYRNTPSVRKKQKAQYRLNRSLPMSIIDSKLSSTCSCDKDLSYGPISISKNEQSECLSKDRAPKGKSLYTYNPYSKGMEPNYNHYSMDSRYGYEEGDVLNKKNDAGMTPARSSEFRRPGDEGKIYRILNVEKQLTYVPEVSPNKFCKPNAVIKRYRTVENPITECESSKYFTGFEKVFPNPLTNLSIFFKKKETIPPRIETKIRTTMVSEIVDRKEVGNDAYKNFIDTHEIDEEIPIHFTKLSKKQIEKNDPRILRVAXVITVXQXKKVTPEQLRNRF Sbjct: 1 MSYSSYSSKTLAKQDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSALVNPEEAKKGIQLKLESEKCEDYQQSLGKCTESNYLEDSKTSYPTTPVYSPNSEVSIDNVLVHKRHKDNENLDSDVETXHCRSFIQNSSSGSRLSLLYRNTPSVRKKQKAQYRLNRSLPMSIIDSKLSSTCSCDKDLSYGPISISKNEQSECLSKDRAPKGKSLYTYNPYSKGMEPNYNHYSMDSRYGYEEGDVLNKKNDAGMTPARSSEFRRPGDEGKIYRILNVEKQLTYVPEVSPNKFCKPNAVIKRYRTVENPITECESSKYFTGFEKVFPNPLTNLSIFFKKKETIPPRIETKIRTTMVSEIVDRKEVGNDAYKNFIDTHEIDEEIPIHFTKLSKKQIEKNDPRILRVAXVITVXQXKKVTPEQLRNRF 445
BLAST of EMLSAG00000010399 vs. L. salmonis peptides
Match: EMLSAP00000006347 (pep:novel supercontig:LSalAtl2s:LSalAtl2s346:648733:650315:1 gene:EMLSAG00000006347 transcript:EMLSAT00000006347 description:"maker-LSalAtl2s346-augustus-gene-6.36") HSP 1 Score: 117.857 bits (294), Expect = 2.872e-29 Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 0 Query: 285 PGDEGKIYRILNVEKQLTYVPEVSPNKFCKPNAVIKRYRTVENPITECESSKYFTGFEKVFPNPLTNLSIFFKKKETIPPRIETKIRTTMVSEIVDRKEVGNDAYKNFIDTHEIDEEIPIHFTKLSKKQIEKNDPRILRVAXVITVXQXKKVTPEQL 441 P KI R + +EK+L Y+ + P P A+ K TVE +C+ YFTG + +PL +LSIF + P RIETKIRTT++SEI + ND + +FID H ID+ I +LS Q+ K DPR LRVA +ITV Q K V PE++ Sbjct: 282 PKKLCKICRRIIIEKKLEYIISMDPCNVMAPKALTKHLYTVERETPDCQHRCYFTGIGRAGGDPLQDLSIFGVPNDD-PCRIETKIRTTIISEIDPTCKCVNDNFDSFIDRHCIDDNIKEFVERLSCDQLTKEDPRTLRVANIITVAQTKNVCPEEI 437 HSP 2 Score: 88.1965 bits (217), Expect = 5.053e-19 Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 0 Query: 14 QDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSALVNPE----EAKKGIQLKLESEKCEDYQQSL 98 Q+ P+INLNVP+PK+V GKV+VTTVSTKTQVRY++++ ++ C P +++TRSWSA++ P+ E + + +E KC SL Sbjct: 19 QESHPIINLNVPIPKNVDGKVKVTTVSTKTQVRYRRSESSMNFQMCDPQYKITRSWSAMMLPDTVKCEEETNQKAAIEENKCGSNLNSL 107
BLAST of EMLSAG00000010399 vs. L. salmonis peptides
Match: EMLSAP00000010398 (pep:novel supercontig:LSalAtl2s:LSalAtl2s68:343786:345681:1 gene:EMLSAG00000010398 transcript:EMLSAT00000010398 description:"maker-LSalAtl2s68-augustus-gene-3.28") HSP 1 Score: 63.929 bits (154), Expect = 2.937e-11 Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 0 Query: 14 QDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSALVN 74 + DRP+++LNVP PKDVVGKV+V T+STKTQVRY+ + E+Y C P +++TR W+A V+ Sbjct: 19 EQDRPLVSLNVPFPKDVVGKVKVKTISTKTQVRYRSKGDPEEYKVCEPQYKITRLWNATVS 79
BLAST of EMLSAG00000010399 vs. L. salmonis peptides
Match: EMLSAP00000007622 (pep:novel supercontig:LSalAtl2s:LSalAtl2s43:825507:853210:1 gene:EMLSAG00000007622 transcript:EMLSAT00000007622 description:"maker-LSalAtl2s43-augustus-gene-8.9") HSP 1 Score: 51.9878 bits (123), Expect = 1.964e-7 Identity = 41/162 (25.31%), Postives = 82/162 (50.62%), Query Frame = 0 Query: 271 DAGMTPARSSEFRRPGDEGKIYRILNVEKQLTYVPEVSPNKFCKPNAVIKRYRTVENPITECESSKYFTGFEKVFPNPLTNLSIFFKKKETIPPRIETKIRTTMVSEIVDRKEVGNDAYKNFIDTHEIDEEIPIHFTKLSKKQIEKNDPRILRVAXVITVXQ 432 D MT +S G+ + R + VEK+L Y+ P K + K+Y+T E+ I C ++KY ++ +PL +LS+F + I +E ++RTT+++++ + ++ H +E+ + T + + +++P+ +RV+ +ITV Q Sbjct: 445 DVNMTKVNTSSTMD-GNRIIVNRQVLVEKKLDYITTNEPAHKMKSKTLSKKYKTTESLIPGCPTAKYLGNAKRSHYDPLKDLSMFGVETHEI---MEKRVRTTILTQLDPESDPSSEQ-------HASKKEVSL--TASINESMAESEPKSVRVSDIITVAQ 593
BLAST of EMLSAG00000010399 vs. L. salmonis peptides
Match: EMLSAP00000002157 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:419901:421106:1 gene:EMLSAG00000002157 transcript:EMLSAT00000002157 description:"maker-LSalAtl2s139-augustus-gene-4.35") HSP 1 Score: 49.6766 bits (117), Expect = 8.601e-7 Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 0 Query: 11 LAKQDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSA-LVNPEEAK 79 L D ++NLN+P+P D++GKVRV TV++ TQV Y+ +DE+ + RS S+ L+NP+ + Sbjct: 7 LESPDQNSLLNLNIPIPADLLGKVRVATVNSNTQVSYRSIVDDEEV--------LKRSSSSYLINPDNTQ 68 The following BLAST results are available for this feature:
BLAST of EMLSAG00000010399 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000010399 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 3
BLAST of EMLSAG00000010399 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000010399 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000010399 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000010399 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000010399 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s68:348363..350705+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000010399-693165 ID=EMLSAG00000010399-693165|Name=EMLSAG00000010399|organism=Lepeophtheirus salmonis|type=gene|length=2343bp|location=Sequence derived from alignment at LSalAtl2s68:348363..350705+ (Lepeophtheirus salmonis)back to top Add to Basket
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