EMLSAG00000010399, EMLSAG00000010399-693165 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000010399
Unique NameEMLSAG00000010399-693165
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000010399 vs. C. finmarchicus
Match: gi|592753363|gb|GAXK01201050.1| (TSA: Calanus finmarchicus comp6116701_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 4.331e-1
Identity = 17/54 (31.48%), Postives = 29/54 (53.70%), Query Frame = 0
Query:   81 GIQLKLESEKCEDYQQSLGKCTESNYLEDSKTSYPTTPVYSPNSEVSIDNVLVH 134
             +++KL    C D +  LGKC +SNY+  S       P Y+ NS   +++++ H
Sbjct:  323 AMRIKLHQPSCSDSEWELGKCYQSNYMNFSGDY--RLPDYNDNSYRHVEDIIKH 478          
BLAST of EMLSAG00000010399 vs. C. finmarchicus
Match: gi|592872998|gb|GAXK01084564.1| (TSA: Calanus finmarchicus comp4808697_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 6.929e+0
Identity = 15/40 (37.50%), Postives = 19/40 (47.50%), Query Frame = 0
Query:   80 KGIQLKLESEKCEDYQQSLGKCTESNYLEDSKTSYPTTPV 119
            K I +   + KCE +    G CT   YL DSKT     P+
Sbjct:   68 KAISVHDCASKCEFFNTQNGSCTALQYLTDSKTCSLFVPI 187          
BLAST of EMLSAG00000010399 vs. C. finmarchicus
Match: gi|592839778|gb|GAXK01117766.1| (TSA: Calanus finmarchicus comp1236129_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 9.873e+0
Identity = 22/64 (34.38%), Postives = 30/64 (46.88%), Query Frame = 0
Query:  173 PSVRKKQKAQYRLNRSLPMSIIDSKLSSTCSCDKDLSYGPISISKNEQSECLSKDRAPKGKSLY 236
            PS  K Q+A    N  L  +II+  L        D  YG I I +N + +   KD+  K KSL+
Sbjct:  466 PSFDKFQRA----NEILHGNIIEKHLIKDDKISNDNEYGEIVIKENIEDDSQHKDKNSKIKSLH 645          
BLAST of EMLSAG00000010399 vs. L. salmonis peptides
Match: EMLSAP00000010399 (pep:novel supercontig:LSalAtl2s:LSalAtl2s68:348363:350705:1 gene:EMLSAG00000010399 transcript:EMLSAT00000010399 description:"maker-LSalAtl2s68-augustus-gene-3.29")

HSP 1 Score: 904.82 bits (2337), Expect = 0.000e+0
Identity = 445/445 (100.00%), Postives = 445/445 (100.00%), Query Frame = 0
Query:    1 MSYSSYSSKTLAKQDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSALVNPEEAKKGIQLKLESEKCEDYQQSLGKCTESNYLEDSKTSYPTTPVYSPNSEVSIDNVLVHKRHKDNENLDSDVETXHCRSFIQNSSSGSRLSLLYRNTPSVRKKQKAQYRLNRSLPMSIIDSKLSSTCSCDKDLSYGPISISKNEQSECLSKDRAPKGKSLYTYNPYSKGMEPNYNHYSMDSRYGYEEGDVLNKKNDAGMTPARSSEFRRPGDEGKIYRILNVEKQLTYVPEVSPNKFCKPNAVIKRYRTVENPITECESSKYFTGFEKVFPNPLTNLSIFFKKKETIPPRIETKIRTTMVSEIVDRKEVGNDAYKNFIDTHEIDEEIPIHFTKLSKKQIEKNDPRILRVAXVITVXQXKKVTPEQLRNRF 445
            MSYSSYSSKTLAKQDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSALVNPEEAKKGIQLKLESEKCEDYQQSLGKCTESNYLEDSKTSYPTTPVYSPNSEVSIDNVLVHKRHKDNENLDSDVETXHCRSFIQNSSSGSRLSLLYRNTPSVRKKQKAQYRLNRSLPMSIIDSKLSSTCSCDKDLSYGPISISKNEQSECLSKDRAPKGKSLYTYNPYSKGMEPNYNHYSMDSRYGYEEGDVLNKKNDAGMTPARSSEFRRPGDEGKIYRILNVEKQLTYVPEVSPNKFCKPNAVIKRYRTVENPITECESSKYFTGFEKVFPNPLTNLSIFFKKKETIPPRIETKIRTTMVSEIVDRKEVGNDAYKNFIDTHEIDEEIPIHFTKLSKKQIEKNDPRILRVAXVITVXQXKKVTPEQLRNRF
Sbjct:    1 MSYSSYSSKTLAKQDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSALVNPEEAKKGIQLKLESEKCEDYQQSLGKCTESNYLEDSKTSYPTTPVYSPNSEVSIDNVLVHKRHKDNENLDSDVETXHCRSFIQNSSSGSRLSLLYRNTPSVRKKQKAQYRLNRSLPMSIIDSKLSSTCSCDKDLSYGPISISKNEQSECLSKDRAPKGKSLYTYNPYSKGMEPNYNHYSMDSRYGYEEGDVLNKKNDAGMTPARSSEFRRPGDEGKIYRILNVEKQLTYVPEVSPNKFCKPNAVIKRYRTVENPITECESSKYFTGFEKVFPNPLTNLSIFFKKKETIPPRIETKIRTTMVSEIVDRKEVGNDAYKNFIDTHEIDEEIPIHFTKLSKKQIEKNDPRILRVAXVITVXQXKKVTPEQLRNRF 445          
BLAST of EMLSAG00000010399 vs. L. salmonis peptides
Match: EMLSAP00000006347 (pep:novel supercontig:LSalAtl2s:LSalAtl2s346:648733:650315:1 gene:EMLSAG00000006347 transcript:EMLSAT00000006347 description:"maker-LSalAtl2s346-augustus-gene-6.36")

HSP 1 Score: 117.857 bits (294), Expect = 2.872e-29
Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 0
Query:  285 PGDEGKIYRILNVEKQLTYVPEVSPNKFCKPNAVIKRYRTVENPITECESSKYFTGFEKVFPNPLTNLSIFFKKKETIPPRIETKIRTTMVSEIVDRKEVGNDAYKNFIDTHEIDEEIPIHFTKLSKKQIEKNDPRILRVAXVITVXQXKKVTPEQL 441
            P    KI R + +EK+L Y+  + P     P A+ K   TVE    +C+   YFTG  +   +PL +LSIF    +  P RIETKIRTT++SEI    +  ND + +FID H ID+ I     +LS  Q+ K DPR LRVA +ITV Q K V PE++
Sbjct:  282 PKKLCKICRRIIIEKKLEYIISMDPCNVMAPKALTKHLYTVERETPDCQHRCYFTGIGRAGGDPLQDLSIFGVPNDD-PCRIETKIRTTIISEIDPTCKCVNDNFDSFIDRHCIDDNIKEFVERLSCDQLTKEDPRTLRVANIITVAQTKNVCPEEI 437          

HSP 2 Score: 88.1965 bits (217), Expect = 5.053e-19
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 0
Query:   14 QDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSALVNPE----EAKKGIQLKLESEKCEDYQQSL 98
            Q+  P+INLNVP+PK+V GKV+VTTVSTKTQVRY++++   ++  C P +++TRSWSA++ P+    E +   +  +E  KC     SL
Sbjct:   19 QESHPIINLNVPIPKNVDGKVKVTTVSTKTQVRYRRSESSMNFQMCDPQYKITRSWSAMMLPDTVKCEEETNQKAAIEENKCGSNLNSL 107          
BLAST of EMLSAG00000010399 vs. L. salmonis peptides
Match: EMLSAP00000010398 (pep:novel supercontig:LSalAtl2s:LSalAtl2s68:343786:345681:1 gene:EMLSAG00000010398 transcript:EMLSAT00000010398 description:"maker-LSalAtl2s68-augustus-gene-3.28")

HSP 1 Score: 63.929 bits (154), Expect = 2.937e-11
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 0
Query:   14 QDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSALVN 74
            + DRP+++LNVP PKDVVGKV+V T+STKTQVRY+   + E+Y  C P +++TR W+A V+
Sbjct:   19 EQDRPLVSLNVPFPKDVVGKVKVKTISTKTQVRYRSKGDPEEYKVCEPQYKITRLWNATVS 79          
BLAST of EMLSAG00000010399 vs. L. salmonis peptides
Match: EMLSAP00000007622 (pep:novel supercontig:LSalAtl2s:LSalAtl2s43:825507:853210:1 gene:EMLSAG00000007622 transcript:EMLSAT00000007622 description:"maker-LSalAtl2s43-augustus-gene-8.9")

HSP 1 Score: 51.9878 bits (123), Expect = 1.964e-7
Identity = 41/162 (25.31%), Postives = 82/162 (50.62%), Query Frame = 0
Query:  271 DAGMTPARSSEFRRPGDEGKIYRILNVEKQLTYVPEVSPNKFCKPNAVIKRYRTVENPITECESSKYFTGFEKVFPNPLTNLSIFFKKKETIPPRIETKIRTTMVSEIVDRKEVGNDAYKNFIDTHEIDEEIPIHFTKLSKKQIEKNDPRILRVAXVITVXQ 432
            D  MT   +S     G+   + R + VEK+L Y+    P    K   + K+Y+T E+ I  C ++KY    ++   +PL +LS+F  +   I   +E ++RTT+++++    +  ++        H   +E+ +  T    + + +++P+ +RV+ +ITV Q
Sbjct:  445 DVNMTKVNTSSTMD-GNRIIVNRQVLVEKKLDYITTNEPAHKMKSKTLSKKYKTTESLIPGCPTAKYLGNAKRSHYDPLKDLSMFGVETHEI---MEKRVRTTILTQLDPESDPSSEQ-------HASKKEVSL--TASINESMAESEPKSVRVSDIITVAQ 593          
BLAST of EMLSAG00000010399 vs. L. salmonis peptides
Match: EMLSAP00000002157 (pep:novel supercontig:LSalAtl2s:LSalAtl2s139:419901:421106:1 gene:EMLSAG00000002157 transcript:EMLSAT00000002157 description:"maker-LSalAtl2s139-augustus-gene-4.35")

HSP 1 Score: 49.6766 bits (117), Expect = 8.601e-7
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 0
Query:   11 LAKQDDRPVINLNVPLPKDVVGKVRVTTVSTKTQVRYKKNQEDEDYHACHPSFRVTRSWSA-LVNPEEAK 79
            L   D   ++NLN+P+P D++GKVRV TV++ TQV Y+   +DE+         + RS S+ L+NP+  +
Sbjct:    7 LESPDQNSLLNLNIPIPADLLGKVRVATVNSNTQVSYRSIVDDEEV--------LKRSSSSYLINPDNTQ 68          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000010399 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010399 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592753363|gb|GAXK01201050.1|4.331e-131.48TSA: Calanus finmarchicus comp6116701_c0_seq1 tran... [more]
gi|592872998|gb|GAXK01084564.1|6.929e+037.50TSA: Calanus finmarchicus comp4808697_c0_seq1 tran... [more]
gi|592839778|gb|GAXK01117766.1|9.873e+034.38TSA: Calanus finmarchicus comp1236129_c0_seq4 tran... [more]
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BLAST of EMLSAG00000010399 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000103990.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s68:348363... [more]
EMLSAP000000063472.872e-2942.68pep:novel supercontig:LSalAtl2s:LSalAtl2s346:64873... [more]
EMLSAP000000103982.937e-1155.74pep:novel supercontig:LSalAtl2s:LSalAtl2s68:343786... [more]
EMLSAP000000076221.964e-725.31pep:novel supercontig:LSalAtl2s:LSalAtl2s43:825507... [more]
EMLSAP000000021578.601e-738.57pep:novel supercontig:LSalAtl2s:LSalAtl2s139:41990... [more]
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BLAST of EMLSAG00000010399 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010399 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010399 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010399 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s68supercontigLSalAtl2s68:348363..350705 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s68-augustus-gene-3.29
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000010399 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000010399EMLSAT00000010399-706246Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s68:348363..350705+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000010399-693165 ID=EMLSAG00000010399-693165|Name=EMLSAG00000010399|organism=Lepeophtheirus salmonis|type=gene|length=2343bp|location=Sequence derived from alignment at LSalAtl2s68:348363..350705+ (Lepeophtheirus salmonis)
TAATTTTGTTAAAATGTTTTCAAATTGTCAATTATATTGCGTTTTTGTCT AAGAAGTATTTTCTAATCATTTTAAGTGTAAAATGTCGTATTCGAGTTAT AGTAGTAAAACCCTTGCAAAACAAGACGATCGACCAGTAATTAATTTAAA TGTACCGTTGCCAAAGGATGTGGTTGGCAAAGTTCGAGTCACAACAGTTT CGACGAAAACACAAGTTCGATACAAAAAAAACCAGGAAGATGAGGATTAT CATGCATGTCATCCATCATTTAGAGTTACTAGATCATGGAGTGCATTAGT TAACCCTGAAGAGGCTAAAAAGGGAATTCAACTTAAATTGGAAAGCGAAA AGTGTGAAGACTATCAACAATCGCTTGGAAAATGCACAGAATCCAACTAC CTAGAAGATTCAAAAACATCTTATCCTACAACTCCAGTATACAGTCCCAA TTCAGAAGTTTCGATCGATAATGTTTTAGTACACAAGAGACATAAGGATA ATGAAAACTTAGATTCCGACGTAGAAACGKCCCATTGCAGGAGCTTTATC CAAAATTCAAGTTCTGGTAGCCGTTTGTCATTGTTATACCGAAATACTCC GAGTGTTAGAAAAAAACAAAAAGCCCAATACCGATTGAATCGAAGTCTCC CGATGAGTATTATTGATTCAAAATTATCATCTACTTGTAGTTGTGACAAA GACTTGTCATACGGTCCTATAAGTATTTCAAAGAATGAACAGTCGGAATG TTTATCAAAAGACAGAGGTATTCTCTAATTTTTTGCGTTTTTTAAGAGTA AAAATATATGCGTCAATTTGATTTCAATGATTATAATATTATGCAGATGT ATTCACTTGTATTAATACATTAACATTAATTTTATTCAGCTCCAAAAGGA AAATCTCTGTATACATACAATCCTTATTCAAAAGGGATGGAACCAAATTA TAATCATTATTCGATGGATTCCAGATATGGATATGAAGAAGGAGATGTAC TTAATAAGAAAAATGATGCTGGAATGACACCAGCAAGATCAAGTGAATTT CGTAGACCTGGTGACGAAGGAAAAATTTACCGTATTCTAAATGTTGAAAA ACAATTAACTTATGTTCCTGAAGTTTCTCCAAATAAATTTTGTAAGCCAA ATGCTGTAATAAAACGCTATAGAACCGTTGAAAATCCAATCACCGAATGT GAAAGTTCAAAATATTTTACTGGGTTTGAAAAGGTTTTTCCAAATCCTCT GACTAACCTTAGTATATTTTTCAAAAAAAAAGAAACTATTCCTCCAAGAA TTGAAACAAAAATAAGAACGACTATGGTTAGTGAAATAGTTGATCGAAAG GAAGTTGGAAATGATGCGTACAAAAACTTTATCGATACTCATGAAATTGA TGAAGAAATACCGATTCATTTTACAAAGCTTTCAAAAAAACAAATTGAAA AAAACGACCCAAGAATTCTTAGAGTGGCTGYTGTGATTACAGTGGSACAA AWCAAAAAGGTGACTCCTGAACAACTTCGAAATCGCTTTTAACAATAAGC GCATTATGAATGCAAATTTTTTATGATTTATCAGAATGTTTATTAATTCA TTAAATTTGTCTCGAGTATTCTTCTTAAGTATTGTACGTATTCTACATAA AAAGTTTTATCTTACAGTATATTTCGTGTGCATTCAAAATAAAATATAAA CAGTTCCCAACTTTTATATAAAATGAAAAAAGTAAATAATAATAATTAAT TGAATACAACACTTACAAAAATAGTGCTAATAAATTAAAATGATTTAAAA AAGTAAATTCATGCTAAATGGGGAATAGTACCTACCAATCTAAATCATAT ATGCACTATAGCAACCAAAGTATTTGCTGTATGCATAGCAATTTCATGCA CAGTTATTGAGTAAATTTATGGAAAAGTTATGATGGTACAAAATTCAATA AATTGATGTATTTTTTATCTTTTATTCGTAATAAAATAAAGATAAAATGA TCCCATTATCAAACTGACATAACGTCCATAAATATGCACTAAGTAAACTG AATTACTCAAATTTGAAGTTCATCTAATAATATATCAGCTTATTTCCACT ATTAGCATTTCTTAATCAATGTGTTGTTGTTCAATCATAGTTTTGTGATT TCTATGTCATCTGATTTCATTTTCTCATGTAGAGGTACCATTCGTTTGTG AAAAATGATGGATACAAAGAGTGAAAAAAGTGTCAGTACCAGCATGAGAC CTGATGTAACGTTTGTACCATATATCCTATAAATATAACTCACAATGATC GGCCCAATCACTCTAGCAAATGATCCCGAGGATGCTAGTGCTC
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