EMLSAG00000011618, EMLSAG00000011618-694384 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592911134|gb|GAXK01047241.1| (TSA: Calanus finmarchicus comp3513275_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 1.388e+0 Identity = 16/51 (31.37%), Postives = 24/51 (47.06%), Query Frame = 0 Query: 166 ECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHE 216 EC+ +L+V + L KDE + F C +C + DN H R H+ Sbjct: 93 ECEQTFSLTVHMKRHLKQHAKDETKHFQCDMCDVKTNRKDNLDKHKRKGHK 245
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592916237|gb|GAXK01042138.1| (TSA: Calanus finmarchicus comp1004986_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 1.394e+0 Identity = 17/62 (27.42%), Postives = 27/62 (43.55%), Query Frame = 0 Query: 35 RFDCSICRSRYKHHPSLFRHFKCAHKE----------QYEQKVALREHLKAEREVLKMLGLP 86 RF C C + H L+RH K H+E + ++K L H+K++ + L P Sbjct: 30 RFQCKQCEKHFSHRSPLYRHVKTVHEEVRFKCNLCDQELKRKSNLDAHIKSKHN*KQFLQFP 215
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592941547|gb|GAXK01017006.1| (TSA: Calanus finmarchicus comp72331_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 1.469e+0 Identity = 10/29 (34.48%), Postives = 20/29 (68.97%), Query Frame = 0 Query: 31 NGDIRFDCSICRSRYKHHPSLFRHFKCAH 59 +G+ F C +C +R++ L++HF+C+H Sbjct: 3170 SGERPFSCVLCLNRFRQKAHLYKHFRCSH 3256
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592948522|gb|GAXK01010031.1| (TSA: Calanus finmarchicus comp318550_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 1.471e+0 Identity = 12/29 (41.38%), Postives = 16/29 (55.17%), Query Frame = 0 Query: 31 NGDIRFDCSICRSRYKHHPSLFRHFKCAH 59 N D++F C +C Y H L RHF+ H Sbjct: 801 NKDMKFQCDLCEKSYSHKDELNRHFRWKH 887
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592930906|gb|GAXK01027647.1| (TSA: Calanus finmarchicus comp246179_c1_seq4 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.534e+0 Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 0 Query: 192 FLCGICGINMENIDNFSAHMRINHEYT 218 F+C IC I M +DN +AH + H T Sbjct: 409 FMCPICSIRMARLDNLNAHTKKTHGVT 489
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592930905|gb|GAXK01027648.1| (TSA: Calanus finmarchicus comp246179_c1_seq5 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.709e+0 Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 0 Query: 192 FLCGICGINMENIDNFSAHMRINHEYT 218 F+C IC I M +DN +AH + H T Sbjct: 409 FMCPICSIRMARLDNLNAHTKKTHGVT 489
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592789951|gb|GAXK01164617.1| (TSA: Calanus finmarchicus comp599346_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 1.834e+0 Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 0 Query: 36 FDCSICRSRYKHHPSLFRHFKCAHKEQ 62 F C++C R+KH+ SL +H HKE+ Sbjct: 218 FPCTLCDKRFKHNNSLSKHINAVHKEK 298
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592806284|gb|GAXK01148284.1| (TSA: Calanus finmarchicus comp229864_c1_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 2.359e+0 Identity = 11/37 (29.73%), Postives = 19/37 (51.35%), Query Frame = 0 Query: 179 PILDDMVKDEKELFLCGICGINMENIDNFSAHMRINH 215 P+L + + + + F+C +CG+ DN H R H Sbjct: 444 PVLKNSMSEGERSFMCNVCGVEFVKYDNLRRHCREKH 554
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592806283|gb|GAXK01148285.1| (TSA: Calanus finmarchicus comp229864_c1_seq2 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 2.451e+0 Identity = 11/37 (29.73%), Postives = 19/37 (51.35%), Query Frame = 0 Query: 179 PILDDMVKDEKELFLCGICGINMENIDNFSAHMRINH 215 P+L + + + + F+C +CG+ DN H R H Sbjct: 422 PVLKNSMSEGERSFMCNVCGVEFVKYDNLRRHCREKH 532
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592780636|gb|GAXK01173932.1| (TSA: Calanus finmarchicus comp824869_c0_seq2 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 2.470e+0 Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 0 Query: 34 IRFDCSICRSRYKHHPSLFRHFKCAHKE 61 I++DCS C ++Y H SL H K AH++ Sbjct: 318 IKYDCSKCNAQYTHRQSLRAHIKSAHEQ 401
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2") HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0 Query: 1 MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN 285 MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN Sbjct: 1 MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN 285
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28") HSP 1 Score: 121.324 bits (303), Expect = 9.729e-33 Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 0 Query: 7 VVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVS 140 + + D KI +L+S+MIV L+ G RFDCS+C SRYKHH SLFRHFK AH ++YE++VALR LKAER+ G PY+RR+N KR + K NKEN + PT+ ++ + V + ++ P S Sbjct: 6 IEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKS 139
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20") HSP 1 Score: 119.398 bits (298), Expect = 8.807e-32 Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 0 Query: 6 SVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPN----------DSIPTQLSNLGTL-VP-LDQ---KYMLPVSNSHYYL-CTNCDQQFPSQQQLDQHGCECQ 168 SV Y D+K+ D +LSSMM++ LQ+G++RFDC++CR RYKHHPSLFRHF+ AHKEQY + ++LR +++ER K++G+ Y RRKN+KRN + + NKEN S LP+ + S+ T T+ VP LD K +LP S L C C QQ S+ L QH ECQ Sbjct: 5 SVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKEN-SLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQ 182 The following BLAST results are available for this feature:
BLAST of EMLSAG00000011618 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000011618 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000011618 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000011618 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000011618 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s802:83392..84519+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000011618-694384 ID=EMLSAG00000011618-694384|Name=EMLSAG00000011618|organism=Lepeophtheirus salmonis|type=gene|length=1128bp|location=Sequence derived from alignment at LSalAtl2s802:83392..84519+ (Lepeophtheirus salmonis)back to top Add to Basket
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