EMLSAG00000011618, EMLSAG00000011618-694384 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011618
Unique NameEMLSAG00000011618-694384
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592911134|gb|GAXK01047241.1| (TSA: Calanus finmarchicus comp3513275_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.388e+0
Identity = 16/51 (31.37%), Postives = 24/51 (47.06%), Query Frame = 0
Query:  166 ECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHE 216
            EC+   +L+V +   L    KDE + F C +C +     DN   H R  H+
Sbjct:   93 ECEQTFSLTVHMKRHLKQHAKDETKHFQCDMCDVKTNRKDNLDKHKRKGHK 245          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592916237|gb|GAXK01042138.1| (TSA: Calanus finmarchicus comp1004986_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.394e+0
Identity = 17/62 (27.42%), Postives = 27/62 (43.55%), Query Frame = 0
Query:   35 RFDCSICRSRYKHHPSLFRHFKCAHKE----------QYEQKVALREHLKAEREVLKMLGLP 86
            RF C  C   + H   L+RH K  H+E          + ++K  L  H+K++    + L  P
Sbjct:   30 RFQCKQCEKHFSHRSPLYRHVKTVHEEVRFKCNLCDQELKRKSNLDAHIKSKHN*KQFLQFP 215          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592941547|gb|GAXK01017006.1| (TSA: Calanus finmarchicus comp72331_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 1.469e+0
Identity = 10/29 (34.48%), Postives = 20/29 (68.97%), Query Frame = 0
Query:   31 NGDIRFDCSICRSRYKHHPSLFRHFKCAH 59
            +G+  F C +C +R++    L++HF+C+H
Sbjct: 3170 SGERPFSCVLCLNRFRQKAHLYKHFRCSH 3256          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592948522|gb|GAXK01010031.1| (TSA: Calanus finmarchicus comp318550_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 1.471e+0
Identity = 12/29 (41.38%), Postives = 16/29 (55.17%), Query Frame = 0
Query:   31 NGDIRFDCSICRSRYKHHPSLFRHFKCAH 59
            N D++F C +C   Y H   L RHF+  H
Sbjct:  801 NKDMKFQCDLCEKSYSHKDELNRHFRWKH 887          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592930906|gb|GAXK01027647.1| (TSA: Calanus finmarchicus comp246179_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.534e+0
Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 0
Query:  192 FLCGICGINMENIDNFSAHMRINHEYT 218
            F+C IC I M  +DN +AH +  H  T
Sbjct:  409 FMCPICSIRMARLDNLNAHTKKTHGVT 489          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592930905|gb|GAXK01027648.1| (TSA: Calanus finmarchicus comp246179_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.709e+0
Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 0
Query:  192 FLCGICGINMENIDNFSAHMRINHEYT 218
            F+C IC I M  +DN +AH +  H  T
Sbjct:  409 FMCPICSIRMARLDNLNAHTKKTHGVT 489          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592789951|gb|GAXK01164617.1| (TSA: Calanus finmarchicus comp599346_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.834e+0
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 0
Query:   36 FDCSICRSRYKHHPSLFRHFKCAHKEQ 62
            F C++C  R+KH+ SL +H    HKE+
Sbjct:  218 FPCTLCDKRFKHNNSLSKHINAVHKEK 298          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592806284|gb|GAXK01148284.1| (TSA: Calanus finmarchicus comp229864_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 2.359e+0
Identity = 11/37 (29.73%), Postives = 19/37 (51.35%), Query Frame = 0
Query:  179 PILDDMVKDEKELFLCGICGINMENIDNFSAHMRINH 215
            P+L + + + +  F+C +CG+     DN   H R  H
Sbjct:  444 PVLKNSMSEGERSFMCNVCGVEFVKYDNLRRHCREKH 554          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592806283|gb|GAXK01148285.1| (TSA: Calanus finmarchicus comp229864_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 2.451e+0
Identity = 11/37 (29.73%), Postives = 19/37 (51.35%), Query Frame = 0
Query:  179 PILDDMVKDEKELFLCGICGINMENIDNFSAHMRINH 215
            P+L + + + +  F+C +CG+     DN   H R  H
Sbjct:  422 PVLKNSMSEGERSFMCNVCGVEFVKYDNLRRHCREKH 532          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592780636|gb|GAXK01173932.1| (TSA: Calanus finmarchicus comp824869_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 2.470e+0
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 0
Query:   34 IRFDCSICRSRYKHHPSLFRHFKCAHKE 61
            I++DCS C ++Y H  SL  H K AH++
Sbjct:  318 IKYDCSKCNAQYTHRQSLRAHIKSAHEQ 401          
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2")

HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query:    1 MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN 285
            MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN
Sbjct:    1 MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN 285          
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28")

HSP 1 Score: 121.324 bits (303), Expect = 9.729e-33
Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 0
Query:    7 VVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVS 140
            + + D KI    +L+S+MIV  L+ G  RFDCS+C SRYKHH SLFRHFK AH ++YE++VALR  LKAER+     G PY+RR+N KR  +  K NKEN +          PT+ ++  + V +  ++  P S
Sbjct:    6 IEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKS 139          
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20")

HSP 1 Score: 119.398 bits (298), Expect = 8.807e-32
Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 0
Query:    6 SVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPN----------DSIPTQLSNLGTL-VP-LDQ---KYMLPVSNSHYYL-CTNCDQQFPSQQQLDQHGCECQ 168
            SV Y D+K+  D +LSSMM++  LQ+G++RFDC++CR RYKHHPSLFRHF+ AHKEQY + ++LR  +++ER   K++G+ Y RRKN+KRN +  + NKEN S LP+  +           S+ T      T+ VP LD    K +LP S     L C  C QQ  S+  L QH  ECQ
Sbjct:    5 SVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKEN-SLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQ 182          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011618 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592911134|gb|GAXK01047241.1|1.388e+031.37TSA: Calanus finmarchicus comp3513275_c0_seq1 tran... [more]
gi|592916237|gb|GAXK01042138.1|1.394e+027.42TSA: Calanus finmarchicus comp1004986_c0_seq1 tran... [more]
gi|592941547|gb|GAXK01017006.1|1.469e+034.48TSA: Calanus finmarchicus comp72331_c0_seq1 transc... [more]
gi|592948522|gb|GAXK01010031.1|1.471e+041.38TSA: Calanus finmarchicus comp318550_c0_seq1 trans... [more]
gi|592930906|gb|GAXK01027647.1|1.534e+044.44TSA: Calanus finmarchicus comp246179_c1_seq4 trans... [more]
gi|592930905|gb|GAXK01027648.1|1.709e+044.44TSA: Calanus finmarchicus comp246179_c1_seq5 trans... [more]
gi|592789951|gb|GAXK01164617.1|1.834e+044.44TSA: Calanus finmarchicus comp599346_c0_seq1 trans... [more]
gi|592806284|gb|GAXK01148284.1|2.359e+029.73TSA: Calanus finmarchicus comp229864_c1_seq1 trans... [more]
gi|592806283|gb|GAXK01148285.1|2.451e+029.73TSA: Calanus finmarchicus comp229864_c1_seq2 trans... [more]
gi|592780636|gb|GAXK01173932.1|2.470e+046.43TSA: Calanus finmarchicus comp824869_c0_seq2 trans... [more]

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BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000116180.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392... [more]
EMLSAP000000059239.729e-3344.78pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246... [more]
EMLSAP000000116178.807e-3245.81pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552... [more]
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BLAST of EMLSAG00000011618 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011618 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011618 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011618 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s802supercontigLSalAtl2s802:83392..84519 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s802-processed-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011618 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011618EMLSAT00000011618-707465Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s802:83392..84519+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011618-694384 ID=EMLSAG00000011618-694384|Name=EMLSAG00000011618|organism=Lepeophtheirus salmonis|type=gene|length=1128bp|location=Sequence derived from alignment at LSalAtl2s802:83392..84519+ (Lepeophtheirus salmonis)
AATAGAGTAATTTTAGATATGATTATGAACAAAACCATGTACATAAATCC ATGAACAAGTTGTGATCATATCATAATAAGAATCAATATAGTAGAGAAGT TCTTTTATATTTCAAACACGATAAGCTCTTAACTTGCATCATGGATAACG AATAAACATTAGGTAAAGAGTTCTTCATGTGACAGTAGGCGGAGGCAAGA GAATAGATAAGTGAGTAATTCGTTTATTGCATAATTATCCACCATTTAAC CCTCTTTTTTTACATTTAGAATGGTGAAAACTTGCAGTGTCGTTTATTTT GATAAAAAGATATGCGKGGACGTTTCTCTTTCGTCCATGATGATCGTATC CGAACTTCAAAATGGAGATATCCGTTTTGATTGCTCCATATGTAGAAGTA GATACAAGCATCATCCCTCCCTGTTTCGACATTTCAAATGTGCTCATAAG GAGCAATATGAACAGAAAGTTGCTCTTAGAGAGCATCTCAAGGCTGAGAG AGAGGTTCTTAAAATGCTGGGGCTTCCTTACATGCGGAGAAAGAATCAGA AAAGGAATACCAAGGGTCGTAAAGTAAATAAAGAAAATATATCACCATTG CCTGAGAAGCCAAATGACTCTATCCCAACACAATTATCGAATTTGGGGAC CCTTGTCCCATTGGATCAAAAATATATGTTGCCCGTGTCAAACTCTCACT ACTACTTATGCACGAATTGTGATCAACAATTCCCTTCACAGCAACAACTG GATCAGCATGGATGTGAATGCCAAGTAGGAGCGAATCTCTCTGTTATTTT AGATCCAATTTTGGACGATATGGTTAAAGACGAGAAGGAACTCTTTCTAT GTGGTATTTGTGGAATTAACATGGAAAATATTGACAATTTTAGTGCTCAT ATGCGAATTAATCACGAATACACAGAATTAATGGGAATTGAATCCCCTCC AGAAACAGTTGTCTATGCAAATACGAGCGCATTAGTGAATCCAAATCTAA TTTCAAAAAACAATTGTGAGATTTATAATATCTGTGAAGTGTGTGAGGAA GTTMTTCTCAAAGAGCTGATGGATGATCATCAGTGCTATGTTCGAGAAGA AATTATGCAATTAWYTAATTATAATTAA
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