EMLSAG00000011618, EMLSAG00000011618-694384 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592874000|gb|GAXK01083562.1| (TSA: Calanus finmarchicus comp176443_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 2.791e+0 Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 0 Query: 38 CSICRSRYKHHPSLFRHFKCAHKEQY 63 C +C +YKH PSL H H+E+Y Sbjct: 480 CELCGKQYKHKPSLQVHISQKHREEY 557
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592815857|gb|GAXK01138711.1| (TSA: Calanus finmarchicus comp511753_c1_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 3.137e+0 Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 0 Query: 36 FDCSICRSRYKHHPSLFRHFKCAHKEQ 62 F+C +C S +KH PSL RH K K++ Sbjct: 493 FECKVCGSVFKHEPSLKRHMKTHQKKE 573
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592815856|gb|GAXK01138712.1| (TSA: Calanus finmarchicus comp511753_c1_seq2 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 3.180e+0 Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 0 Query: 36 FDCSICRSRYKHHPSLFRHFKCAHKEQ 62 F+C +C S +KH PSL RH K K++ Sbjct: 481 FECKVCGSVFKHEPSLKRHMKTHQKKE 561
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592837614|gb|GAXK01119930.1| (TSA: Calanus finmarchicus comp352934_c1_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 3.317e+0 Identity = 12/27 (44.44%), Postives = 17/27 (62.96%), Query Frame = 0 Query: 36 FDCSICRSRYKHHPSLFRHFKCAHKEQ 62 F C +C +RYK P L H+ +HKE+ Sbjct: 659 FACDLCLARYKTRPGLTYHYNHSHKEK 739
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592818422|gb|GAXK01136146.1| (TSA: Calanus finmarchicus comp1851699_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 3.375e+0 Identity = 25/103 (24.27%), Postives = 42/103 (40.78%), Query Frame = 0 Query: 9 YFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLP 111 + DK +L+ + +QN D+ F+C IC K+ + +K L++H K E+ + RK Q R+ +N NIS +P Sbjct: 1164 FCDKNFKTKFTLNRHLETVHMQNSDVTFECKIC------------------KKVFRRKDKLQKHEKTHLEIKVEMSCEVCDRKFQSRDG----LNAHNISCMP 1406
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2") HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0 Query: 1 MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN 285 MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN Sbjct: 1 MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN 285
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28") HSP 1 Score: 121.324 bits (303), Expect = 9.729e-33 Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 0 Query: 7 VVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVS 140 + + D KI +L+S+MIV L+ G RFDCS+C SRYKHH SLFRHFK AH ++YE++VALR LKAER+ G PY+RR+N KR + K NKEN + PT+ ++ + V + ++ P S Sbjct: 6 IEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKS 139
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20") HSP 1 Score: 119.398 bits (298), Expect = 8.807e-32 Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 0 Query: 6 SVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPN----------DSIPTQLSNLGTL-VP-LDQ---KYMLPVSNSHYYL-CTNCDQQFPSQQQLDQHGCECQ 168 SV Y D+K+ D +LSSMM++ LQ+G++RFDC++CR RYKHHPSLFRHF+ AHKEQY + ++LR +++ER K++G+ Y RRKN+KRN + + NKEN S LP+ + S+ T T+ VP LD K +LP S L C C QQ S+ L QH ECQ Sbjct: 5 SVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKEN-SLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQ 182 The following BLAST results are available for this feature:
BLAST of EMLSAG00000011618 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000011618 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000011618 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000011618 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000011618 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s802:83392..84519+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000011618-694384 ID=EMLSAG00000011618-694384|Name=EMLSAG00000011618|organism=Lepeophtheirus salmonis|type=gene|length=1128bp|location=Sequence derived from alignment at LSalAtl2s802:83392..84519+ (Lepeophtheirus salmonis)back to top Add to Basket
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