EMLSAG00000011618, EMLSAG00000011618-694384 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011618
Unique NameEMLSAG00000011618-694384
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592874000|gb|GAXK01083562.1| (TSA: Calanus finmarchicus comp176443_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 2.791e+0
Identity = 12/26 (46.15%), Postives = 16/26 (61.54%), Query Frame = 0
Query:   38 CSICRSRYKHHPSLFRHFKCAHKEQY 63
            C +C  +YKH PSL  H    H+E+Y
Sbjct:  480 CELCGKQYKHKPSLQVHISQKHREEY 557          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592815857|gb|GAXK01138711.1| (TSA: Calanus finmarchicus comp511753_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.137e+0
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 0
Query:   36 FDCSICRSRYKHHPSLFRHFKCAHKEQ 62
            F+C +C S +KH PSL RH K   K++
Sbjct:  493 FECKVCGSVFKHEPSLKRHMKTHQKKE 573          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592815856|gb|GAXK01138712.1| (TSA: Calanus finmarchicus comp511753_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.180e+0
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 0
Query:   36 FDCSICRSRYKHHPSLFRHFKCAHKEQ 62
            F+C +C S +KH PSL RH K   K++
Sbjct:  481 FECKVCGSVFKHEPSLKRHMKTHQKKE 561          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592837614|gb|GAXK01119930.1| (TSA: Calanus finmarchicus comp352934_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.317e+0
Identity = 12/27 (44.44%), Postives = 17/27 (62.96%), Query Frame = 0
Query:   36 FDCSICRSRYKHHPSLFRHFKCAHKEQ 62
            F C +C +RYK  P L  H+  +HKE+
Sbjct:  659 FACDLCLARYKTRPGLTYHYNHSHKEK 739          
BLAST of EMLSAG00000011618 vs. C. finmarchicus
Match: gi|592818422|gb|GAXK01136146.1| (TSA: Calanus finmarchicus comp1851699_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 3.375e+0
Identity = 25/103 (24.27%), Postives = 42/103 (40.78%), Query Frame = 0
Query:    9 YFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLP 111
            + DK      +L+  +    +QN D+ F+C IC                  K+ + +K  L++H K   E+   +      RK Q R+     +N  NIS +P
Sbjct: 1164 FCDKNFKTKFTLNRHLETVHMQNSDVTFECKIC------------------KKVFRRKDKLQKHEKTHLEIKVEMSCEVCDRKFQSRDG----LNAHNISCMP 1406          
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2")

HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query:    1 MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN 285
            MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN
Sbjct:    1 MVKTCSVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVSNSHYYLCTNCDQQFPSQQQLDQHGCECQVGANLSVILDPILDDMVKDEKELFLCGICGINMENIDNFSAHMRINHEYTELMGIESPPETVVYANTSALVNPNLISKNNCEIYNICEVCEEVXLKELMDDHQCYVREEIMQLXNYN 285          
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28")

HSP 1 Score: 121.324 bits (303), Expect = 9.729e-33
Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 0
Query:    7 VVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVS 140
            + + D KI    +L+S+MIV  L+ G  RFDCS+C SRYKHH SLFRHFK AH ++YE++VALR  LKAER+     G PY+RR+N KR  +  K NKEN +          PT+ ++  + V +  ++  P S
Sbjct:    6 IEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKS 139          
BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20")

HSP 1 Score: 119.398 bits (298), Expect = 8.807e-32
Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 0
Query:    6 SVVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPN----------DSIPTQLSNLGTL-VP-LDQ---KYMLPVSNSHYYL-CTNCDQQFPSQQQLDQHGCECQ 168
            SV Y D+K+  D +LSSMM++  LQ+G++RFDC++CR RYKHHPSLFRHF+ AHKEQY + ++LR  +++ER   K++G+ Y RRKN+KRN +  + NKEN S LP+  +           S+ T      T+ VP LD    K +LP S     L C  C QQ  S+  L QH  ECQ
Sbjct:    5 SVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKEN-SLLPDDAHTTPQIISLEESSVETTHVQATTIQVPILDNNCMKQILPSSMVFMDLTCKICGQQLESEHALIQHIPECQ 182          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011618 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011618 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592874000|gb|GAXK01083562.1|2.791e+046.15TSA: Calanus finmarchicus comp176443_c0_seq1 trans... [more]
gi|592815857|gb|GAXK01138711.1|3.137e+048.15TSA: Calanus finmarchicus comp511753_c1_seq1 trans... [more]
gi|592815856|gb|GAXK01138712.1|3.180e+048.15TSA: Calanus finmarchicus comp511753_c1_seq2 trans... [more]
gi|592837614|gb|GAXK01119930.1|3.317e+044.44TSA: Calanus finmarchicus comp352934_c1_seq1 trans... [more]
gi|592818422|gb|GAXK01136146.1|3.375e+024.27TSA: Calanus finmarchicus comp1851699_c0_seq1 tran... [more]

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BLAST of EMLSAG00000011618 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000116180.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392... [more]
EMLSAP000000059239.729e-3344.78pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246... [more]
EMLSAP000000116178.807e-3245.81pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552... [more]
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BLAST of EMLSAG00000011618 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011618 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011618 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011618 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s802supercontigLSalAtl2s802:83392..84519 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s802-processed-gene-0.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011618 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011618EMLSAT00000011618-707465Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s802:83392..84519+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011618-694384 ID=EMLSAG00000011618-694384|Name=EMLSAG00000011618|organism=Lepeophtheirus salmonis|type=gene|length=1128bp|location=Sequence derived from alignment at LSalAtl2s802:83392..84519+ (Lepeophtheirus salmonis)
AATAGAGTAATTTTAGATATGATTATGAACAAAACCATGTACATAAATCC ATGAACAAGTTGTGATCATATCATAATAAGAATCAATATAGTAGAGAAGT TCTTTTATATTTCAAACACGATAAGCTCTTAACTTGCATCATGGATAACG AATAAACATTAGGTAAAGAGTTCTTCATGTGACAGTAGGCGGAGGCAAGA GAATAGATAAGTGAGTAATTCGTTTATTGCATAATTATCCACCATTTAAC CCTCTTTTTTTACATTTAGAATGGTGAAAACTTGCAGTGTCGTTTATTTT GATAAAAAGATATGCGKGGACGTTTCTCTTTCGTCCATGATGATCGTATC CGAACTTCAAAATGGAGATATCCGTTTTGATTGCTCCATATGTAGAAGTA GATACAAGCATCATCCCTCCCTGTTTCGACATTTCAAATGTGCTCATAAG GAGCAATATGAACAGAAAGTTGCTCTTAGAGAGCATCTCAAGGCTGAGAG AGAGGTTCTTAAAATGCTGGGGCTTCCTTACATGCGGAGAAAGAATCAGA AAAGGAATACCAAGGGTCGTAAAGTAAATAAAGAAAATATATCACCATTG CCTGAGAAGCCAAATGACTCTATCCCAACACAATTATCGAATTTGGGGAC CCTTGTCCCATTGGATCAAAAATATATGTTGCCCGTGTCAAACTCTCACT ACTACTTATGCACGAATTGTGATCAACAATTCCCTTCACAGCAACAACTG GATCAGCATGGATGTGAATGCCAAGTAGGAGCGAATCTCTCTGTTATTTT AGATCCAATTTTGGACGATATGGTTAAAGACGAGAAGGAACTCTTTCTAT GTGGTATTTGTGGAATTAACATGGAAAATATTGACAATTTTAGTGCTCAT ATGCGAATTAATCACGAATACACAGAATTAATGGGAATTGAATCCCCTCC AGAAACAGTTGTCTATGCAAATACGAGCGCATTAGTGAATCCAAATCTAA TTTCAAAAAACAATTGTGAGATTTATAATATCTGTGAAGTGTGTGAGGAA GTTMTTCTCAAAGAGCTGATGGATGATCATCAGTGCTATGTTCGAGAAGA AATTATGCAATTAWYTAATTATAATTAA
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