EMLSAG00000012226, EMLSAG00000012226-694992 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012226
Unique NameEMLSAG00000012226-694992
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795049|gb|GAXK01159519.1| (TSA: Calanus finmarchicus comp1175258_c0_seq8 transcribed RNA sequence)

HSP 1 Score: 63.1586 bits (152), Expect = 7.355e-12
Identity = 36/117 (30.77%), Postives = 52/117 (44.44%), Query Frame = 0 
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLES 132
            C+LC   V   E   GE     HR  C   N+ +   L+   + C  CR+ LRLW       +     SC    + + NTG NR+ CF CD D C  C  +++ +     S ++ ES
Sbjct:  146 CYLCHKSVPESEWKSGE-----HRELCATQNFELLRGLKTINIKCKQCREPLRLWPKMGAEFYCASGYSCDSHGRGIVNTGINRFNCFQCDIDFCLPCVEEKMDSEKDIESGDFRES 481
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BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795050|gb|GAXK01159518.1| (TSA: Calanus finmarchicus comp1175258_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 62.7734 bits (151), Expect = 8.735e-12
Identity = 36/117 (30.77%), Postives = 52/117 (44.44%), Query Frame = 0 
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLES 132
            C+LC   V   E   GE     HR  C   N+ +   L+   + C  CR+ LRLW       +     SC    + + NTG NR+ CF CD D C  C  +++ +     S ++ ES
Sbjct:  146 CYLCHKSVPESEWKSGE-----HRELCATQNFELLRGLKTINIKCKQCREPLRLWPKMGAEFYCASGYSCDSHGRGIVNTGINRFNCFQCDIDFCLPCVEEKMDSEKDIESGDFRES 481
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BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795053|gb|GAXK01159515.1| (TSA: Calanus finmarchicus comp1175258_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 60.077 bits (144), Expect = 1.230e-10
Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0 
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYS 125
            C+LC   V   E   GE     HR  C   N+ +   L+   + C  CR+ LRLW       +     SC    + + NTG NR+ CF CD D C  C  +++ ++   S
Sbjct:  321 CYLCHKSVPESEWKSGE-----HRELCATQNFELLRGLKTINIKCKQCREPLRLWPKMGAEFYCASGYSCDSHGRGIVNTGINRFNCFQCDIDFCLPCVEEKMASQTETS 635
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BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795055|gb|GAXK01159513.1| (TSA: Calanus finmarchicus comp1175258_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 60.077 bits (144), Expect = 1.294e-10
Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0 
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYS 125
            C+LC   V   E   GE     HR  C   N+ +   L+   + C  CR+ LRLW       +     SC    + + NTG NR+ CF CD D C  C  +++ ++   S
Sbjct:  349 CYLCHKSVPESEWKSGE-----HRELCATQNFELLRGLKTINIKCKQCREPLRLWPKMGAEFYCASGYSCDSHGRGIVNTGINRFNCFQCDIDFCLPCVEEKMASQTETS 663
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BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795054|gb|GAXK01159514.1| (TSA: Calanus finmarchicus comp1175258_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 60.077 bits (144), Expect = 1.332e-10
Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0 
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYS 125
            C+LC   V   E   GE     HR  C   N+ +   L+   + C  CR+ LRLW       +     SC    + + NTG NR+ CF CD D C  C  +++ ++   S
Sbjct:  321 CYLCHKSVPESEWKSGE-----HRELCATQNFELLRGLKTINIKCKQCREPLRLWPKMGAEFYCASGYSCDSHGRGIVNTGINRFNCFQCDIDFCLPCVEEKMASQTETS 635
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BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795056|gb|GAXK01159512.1| (TSA: Calanus finmarchicus comp1175258_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 60.077 bits (144), Expect = 1.393e-10
Identity = 34/110 (30.91%), Postives = 49/110 (44.55%), Query Frame = 0 
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYS 125
            C+LC   V   E   GE     HR  C   N+ +   L+   + C  CR+ LRLW       +     SC    + + NTG NR+ CF CD D C  C  +++ ++   S
Sbjct:  349 CYLCHKSVPESEWKSGE-----HRELCATQNFELLRGLKTINIKCKQCREPLRLWPKMGAEFYCASGYSCDSHGRGIVNTGINRFNCFQCDIDFCLPCVEEKMASQTETS 663
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BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795051|gb|GAXK01159517.1| (TSA: Calanus finmarchicus comp1175258_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 56.225 bits (134), Expect = 2.189e-9
Identity = 36/117 (30.77%), Postives = 51/117 (43.59%), Query Frame = 0 
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLES 132
            C+LC   V   +   GE     HR  C   N  +    +   + C  CRK LRLW       +     SC    + + NTG NR+ CF C+ D C  C  +++      +SD+Y ES
Sbjct:  200 CYLCHKSVPESKWKSGE-----HRELCATQNAELLRGFKTINIKCKQCRKPLRLWPKMGSEFYCASGYSCDSHGRGIVNTGINRFNCFQCNIDFCLPCVEEKM------NSDKYSES 517
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BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592795052|gb|GAXK01159516.1| (TSA: Calanus finmarchicus comp1175258_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 55.8398 bits (133), Expect = 3.025e-9
Identity = 36/117 (30.77%), Postives = 51/117 (43.59%), Query Frame = 0 
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLES 132
            C+LC   V   +   GE     HR  C   N  +    +   + C  CRK LRLW       +     SC    + + NTG NR+ CF C+ D C  C  +++      +SD+Y ES
Sbjct:  200 CYLCHKSVPESKWKSGE-----HRELCATQNAELLRGFKTINIKCKQCRKPLRLWPKMGSEFYCASGYSCDSHGRGIVNTGINRFNCFQCNIDFCLPCVEEKM------NSDKYSES 517
[Close]
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592769276|gb|GAXK01185292.1| (TSA: Calanus finmarchicus comp3923643_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 50.447 bits (119), Expect = 4.362e-8
Identity = 35/111 (31.53%), Postives = 44/111 (39.64%), Query Frame = 0 
Query:    5 LVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLW-DLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTC 113
            L   V      C+LC   V   +   G      HR  C   N T      + P +PC  C  K+RLW D    F       +C      + N+  NRY CF CDYD+C  C
Sbjct:   13 LCGSVWCDDIVCYLCNQEVGDRQWGNGS-----HRAVCAKENLTKLETFLEHPNLPCGKCGNKMRLWTDQGSLFVCNSSYSTCKQKGGNLDNSSGNRYNCFGCDYDICIGC 330
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BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592902374|gb|GAXK01056001.1| (TSA: Calanus finmarchicus comp866149_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 51.2174 bits (121), Expect = 1.196e-7
Identity = 31/102 (30.39%), Postives = 44/102 (43.14%), Query Frame = 0 
Query:   34 DWYRHRLTCILNNYTIYCKLRQ-TPVPCYICRKKLRLWDLYEEFPFTCKRRS-CSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133
            DW  HR+ C + N      L   +PV C+ C   LR   +Y    F C  +  C    K +     NRY C+ CD+DLC  C ++ +        D+  E D
Sbjct:  164 DWEMHRIECAITNKDKLEHLSTPSPVRCFRCNTFLRALPVYPVTVFICDNQGKCQNEGKELVTNINNRYNCYYCDFDLCSECITRILSKTGMEKGDQMKEED 469
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BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Match: EMLSAP00000012226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s88:488619:489085:-1 gene:EMLSAG00000012226 transcript:EMLSAT00000012226 description:"maker-LSalAtl2s88-augustus-gene-4.4")

HSP 1 Score: 276.944 bits (707), Expect = 1.377e-96
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 
Query:    1 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133
            MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD
Sbjct:    1 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133
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BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Match: EMLSAP00000010557 (pep:novel supercontig:LSalAtl2s:LSalAtl2s700:194951:200781:1 gene:EMLSAG00000010557 transcript:EMLSAT00000010557 description:"snap_masked-LSalAtl2s700-processed-gene-1.19")

HSP 1 Score: 48.521 bits (114), Expect = 3.122e-8
Identity = 30/81 (37.04%), Postives = 36/81 (44.44%), Query Frame = 0 
Query:   38 HRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLWDLYEEFPFTCKRRS-CSGFEKPMANTGYNRYTCFACDYDLCFTCYSK 116
            HR +C   N      L  +   PC  C K LR W      PF C   S C      + NTG NR+ CF C+YDLC  C  +
Sbjct:   30 HRKSCSDKNVIFINSLPTSDRAPCPKCGKXLRQWPEKLVTPFKCDGGSKCPNSGLLLPNTGDNRFNCFTCNYDLCHDCIKR 110
[Close]
BLAST of EMLSAG00000012226 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold68_size422247-snap-gene-1.15 (protein:Tk11390 transcript:maker-scaffold68_size422247-snap-gene-1.15-mRNA-1 annotation:"hypothetical protein L798_02492 partial")

HSP 1 Score: 53.1434 bits (126), Expect = 2.401e-9
Identity = 37/109 (33.94%), Postives = 47/109 (43.12%), Query Frame = 0 
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVP---CYICRKKLRLWDLYEEFP-FTCK-RRSCSGF------EKPMANTGYNRYTCFACDYDLCFTC 113
            C+LC   +     L GE     HR+ C  N +  +      P P   C IC   L+LW      P F C   + C+        +K M N G NRY CF CD+DLC  C
Sbjct:  132 CYLCEQQIPRRYWLSGE-----HRIECA-NEHERFLDKLPAPFPSSRCPICYHPLKLWPKQLGPPEFMCSSNKKCTEMANDGVTKKSMDNAGDNRYNCFNCDFDLCIDC 234
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012226 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012226 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592795049|gb|GAXK01159519.1|7.355e-1230.77TSA: Calanus finmarchicus comp1175258_c0_seq8 tran... [more]
gi|592795050|gb|GAXK01159518.1|8.735e-1230.77TSA: Calanus finmarchicus comp1175258_c0_seq7 tran... [more]
gi|592795053|gb|GAXK01159515.1|1.230e-1030.91TSA: Calanus finmarchicus comp1175258_c0_seq4 tran... [more]
gi|592795055|gb|GAXK01159513.1|1.294e-1030.91TSA: Calanus finmarchicus comp1175258_c0_seq2 tran... [more]
gi|592795054|gb|GAXK01159514.1|1.332e-1030.91TSA: Calanus finmarchicus comp1175258_c0_seq3 tran... [more]
gi|592795056|gb|GAXK01159512.1|1.393e-1030.91TSA: Calanus finmarchicus comp1175258_c0_seq1 tran... [more]
gi|592795051|gb|GAXK01159517.1|2.189e-930.77TSA: Calanus finmarchicus comp1175258_c0_seq6 tran... [more]
gi|592795052|gb|GAXK01159516.1|3.025e-930.77TSA: Calanus finmarchicus comp1175258_c0_seq5 tran... [more]
gi|592769276|gb|GAXK01185292.1|4.362e-831.53TSA: Calanus finmarchicus comp3923643_c0_seq1 tran... [more]
gi|592902374|gb|GAXK01056001.1|1.196e-730.39TSA: Calanus finmarchicus comp866149_c1_seq1 trans... [more]

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BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000122261.377e-96100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s88:488619... [more]
EMLSAP000000105573.122e-837.04pep:novel supercontig:LSalAtl2s:LSalAtl2s700:19495... [more]
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BLAST of EMLSAG00000012226 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012226 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012226 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012226 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold68_size422247-snap-gene-1.152.401e-933.94protein:Tk11390 transcript:maker-scaffold68_size42... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s88supercontigLSalAtl2s88:488619..489085 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s88-augustus-gene-4.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012226 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012226EMLSAT00000012226-708073Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s88:488619..489085-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012226-694992 ID=EMLSAG00000012226-694992|Name=EMLSAG00000012226|organism=Lepeophtheirus salmonis|type=gene|length=467bp|location=Sequence derived from alignment at LSalAtl2s88:488619..489085- (Lepeophtheirus salmonis)
ATGTTTGCAAACCTAGTGAGTAAAGTTCTTTTTAGATCCTTTTATTGTCA
CCTCTGCGGTGGGATCGTTATGCCTGTGGAGGGGTTAGAGGGAGAACCAG
ATTGGTATCGTCATCGCCTCACTTGTATCCTTAATAATTACACTATTTAC
TGTAAATTGAGACAAACTCCCGTGCCTTGTTACATCTGTAGAAAAAAGTT
GAGACTTTGGGATTTGTACGAGGAGTTTCCATTTACGTGTAAAAGACGCA
GCTGTTCCGGGTAATTACGTTTCTTTTTATCATATAGTAAGGCAAAGTTA
TTAACAACTTAATCTTTTATGATAGATTCGAAAAGCCAATGGCAAATACA
GGCTACAATCGCTATACTTGCTTTGCTTGTGACTATGATCTTTGTTTTAC
GTGTTATTCAAAAGAAGTCCCAGCAAGAGTCAGCTACTCTTCTGATGAAT
ATCTCGAGAGCGATTGA
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