EMLSAG00000012226, EMLSAG00000012226-694992 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592757802|gb|GAXK01196611.1| (TSA: Calanus finmarchicus comp2558686_c0_seq1 transcribed RNA sequence) HSP 1 Score: 51.2174 bits (121), Expect = 1.550e-7 Identity = 30/83 (36.14%), Postives = 39/83 (46.99%), Query Frame = 0 Query: 37 RHRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEV 118 +HR C + P + C C+ +LRLW F C R C G +K + NTG NRY CF C+ DLC C +E Sbjct: 19 QHRRQCATKLADTLAQAATHPSLSCENCKTRLRLWPEGRGGAFVCDGR-CRGGDK-ILNTGKNRYNCFLCNLDLCDVCAGREA 261
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592925345|gb|GAXK01033070.1| (TSA: Calanus finmarchicus comp1756832_c0_seq1 transcribed RNA sequence) HSP 1 Score: 50.8322 bits (120), Expect = 1.759e-7 Identity = 35/98 (35.71%), Postives = 46/98 (46.94%), Query Frame = 0 Query: 37 RHRLTCILNNYTIYCKLRQTPVP----CYICRKKLRLWDLYEEFPFTCKR--RSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDE 128 +HR C N +L TP P C C +KL+LW Y+ PF C +C EK + G NR++CF CDY LC C + S+DE Sbjct: 338 KHRDMCAGINKD---ELELTPSPRKVWCCFCSEKLKLWPAYKMTPFRCNSGFENCPLKEKKIRCDGTNRFSCFLCDYTLCIGCVDTIDHVAKNGSADE 622
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592957199|gb|GAXK01001357.1| (TSA: Calanus finmarchicus comp660018_c0_seq1 transcribed RNA sequence) HSP 1 Score: 50.447 bits (119), Expect = 2.606e-7 Identity = 23/71 (32.39%), Postives = 41/71 (57.75%), Query Frame = 0 Query: 58 VPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDE 128 + C CR +L+LW + PF C +C + + +TG NR+ CF+C++DLC +C ++++ V +E Sbjct: 275 IRCPKCRARLKLWPVNHGPPFACSSSNCPIVGR-IKSTGQNRFNCFSCNFDLCESCVNRKLGKTVMGWEEE 484
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592813352|gb|GAXK01141216.1| (TSA: Calanus finmarchicus comp5192560_c0_seq1 transcribed RNA sequence) HSP 1 Score: 47.7506 bits (112), Expect = 7.893e-7 Identity = 25/73 (34.25%), Postives = 38/73 (52.05%), Query Frame = 0 Query: 49 IYCKLRQTPVPCYICRKKLRLWDLYE-EFPFTCKRRS--CSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEV 118 + K+ V C C+ KL+LW L++ F C C +ANTG N Y+C+ C+YDLC +C + + Sbjct: 185 VLAKMSIAAVKCPSCQTKLKLWTLHKLSQSFICSDTGLGCPALGAYVANTGTNWYSCYKCEYDLCDSCVQRRL 403
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592920347|gb|GAXK01038028.1| (TSA: Calanus finmarchicus comp859668_c0_seq1 transcribed RNA sequence) HSP 1 Score: 47.7506 bits (112), Expect = 1.730e-6 Identity = 26/76 (34.21%), Postives = 37/76 (48.68%), Query Frame = 0 Query: 39 RLTCILNNYTIYCKLRQTPVPCYICRKKLRLW-DLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTC 113 R T L+ + + +R C C+ KL++W D F + SC + + +G NRY CF CDYDLC C Sbjct: 498 RCTAQLSTFQTHSSIR-----CAQCKDKLKIWPDQGPAFQCDSQLSSCPTMGQEIGASGGNRYNCFLCDYDLCKAC 710
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592920346|gb|GAXK01038029.1| (TSA: Calanus finmarchicus comp859668_c0_seq2 transcribed RNA sequence) HSP 1 Score: 43.8986 bits (102), Expect = 2.659e-5 Identity = 20/52 (38.46%), Postives = 28/52 (53.85%), Query Frame = 0 Query: 63 CRKKLRLW-DLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTC 113 C+ KL++W D F + SC + + +G NRY CF CDYD+C C Sbjct: 483 CKDKLKIWPDQGPAFQCDSQLSSCPTMGQEIGASGGNRYNCFLCDYDVCKAC 638
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592885747|gb|GAXK01072628.1| (TSA: Calanus finmarchicus comp5259834_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.9726 bits (97), Expect = 1.387e-4 Identity = 19/46 (41.30%), Postives = 25/46 (54.35%), Query Frame = 0 Query: 68 RLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTC 113 ++W FPFTC +C+ KP G R+ CF CD+DLC C Sbjct: 595 KIWPKKISFPFTCDNFACT---KPALGAGALRFNCFVCDFDLCELC 723
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592857563|gb|GAXK01099999.1| (TSA: Calanus finmarchicus comp252937_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.5874 bits (96), Expect = 2.460e-4 Identity = 37/111 (33.33%), Postives = 45/111 (40.54%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVP----CYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARV 122 C+LC V + GE HR C NN +L P P C C ++LRLW + PF C +TG NR CF CD+D C C E RV Sbjct: 516 CYLCLNKVRNSDWDSGE-----HRRRCAFNNQR---ELLGFPQPYDAYCPNCSERLRLWPA-KGHPFYCDECPYDQRNVLKRSTGENRLNCFLCDFDCCVNCSGAERFQRV 821
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592760366|gb|GAXK01194047.1| (TSA: Calanus finmarchicus comp1192910_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.817 bits (94), Expect = 3.569e-4 Identity = 32/93 (34.41%), Postives = 39/93 (41.94%), Query Frame = 0 Query: 34 DWYRHRLTCILNNYTIYCKLRQTPVP----CYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARV 122 D HR C N +L P P C CR++LRLW + PF C S + G NR CF CD+D C +C E RV Sbjct: 23 DSGEHRKRCAFKNQR---ELLGFPQPYDAYCPNCRERLRLWPA-KGHPFYCDECPNSRRNVLKKSMGNNRLNCFQCDFDRCVSCADAERFQRV 289
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592916193|gb|GAXK01042182.1| (TSA: Calanus finmarchicus comp1004224_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 1.120e-3 Identity = 34/111 (30.63%), Postives = 47/111 (42.34%), Query Frame = 0 Query: 18 LCGG------IVMPVEGLEGEPDWY--RHRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLWDLYEEFPFTCKR--RSCSGFEKPMANTGY-NRYTCFACDYDLCFTCYSK 116 LCGG + +E + G+ W HR C N P + C C+ +LR+W + FTC SC EK + NR TC+ CDY+LC C + Sbjct: 158 LCGGGGDAAVCSLCLESVSGDA-WSSGEHRSQCASRNTAKLSSFPAHPHLSCTKCKGRLRVWP-AQGPKFTCDSPASSCQSGEKARQSPAQQNRLTCYLCDYNLCKLCVQR 484
BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Match: EMLSAP00000012226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s88:488619:489085:-1 gene:EMLSAG00000012226 transcript:EMLSAT00000012226 description:"maker-LSalAtl2s88-augustus-gene-4.4") HSP 1 Score: 276.944 bits (707), Expect = 1.377e-96 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 Query: 1 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD Sbjct: 1 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133
BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Match: EMLSAP00000010557 (pep:novel supercontig:LSalAtl2s:LSalAtl2s700:194951:200781:1 gene:EMLSAG00000010557 transcript:EMLSAT00000010557 description:"snap_masked-LSalAtl2s700-processed-gene-1.19") HSP 1 Score: 48.521 bits (114), Expect = 3.122e-8 Identity = 30/81 (37.04%), Postives = 36/81 (44.44%), Query Frame = 0 Query: 38 HRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLWDLYEEFPFTCKRRS-CSGFEKPMANTGYNRYTCFACDYDLCFTCYSK 116 HR +C N L + PC C K LR W PF C S C + NTG NR+ CF C+YDLC C + Sbjct: 30 HRKSCSDKNVIFINSLPTSDRAPCPKCGKXLRQWPEKLVTPFKCDGGSKCPNSGLLLPNTGDNRFNCFTCNYDLCHDCIKR 110
BLAST of EMLSAG00000012226 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold68_size422247-snap-gene-1.15 (protein:Tk11390 transcript:maker-scaffold68_size422247-snap-gene-1.15-mRNA-1 annotation:"hypothetical protein L798_02492 partial") HSP 1 Score: 53.1434 bits (126), Expect = 2.401e-9 Identity = 37/109 (33.94%), Postives = 47/109 (43.12%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVP---CYICRKKLRLWDLYEEFP-FTCK-RRSCSGF------EKPMANTGYNRYTCFACDYDLCFTC 113 C+LC + L GE HR+ C N + + P P C IC L+LW P F C + C+ +K M N G NRY CF CD+DLC C Sbjct: 132 CYLCEQQIPRRYWLSGE-----HRIECA-NEHERFLDKLPAPFPSSRCPICYHPLKLWPKQLGPPEFMCSSNKKCTEMANDGVTKKSMDNAGDNRYNCFNCDFDLCIDC 234 The following BLAST results are available for this feature:
BLAST of EMLSAG00000012226 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000012226 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000012226 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000012226 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000012226 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s88:488619..489085- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000012226-694992 ID=EMLSAG00000012226-694992|Name=EMLSAG00000012226|organism=Lepeophtheirus salmonis|type=gene|length=467bp|location=Sequence derived from alignment at LSalAtl2s88:488619..489085- (Lepeophtheirus salmonis)back to top Add to Basket
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