EMLSAG00000012226, EMLSAG00000012226-694992 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012226
Unique NameEMLSAG00000012226-694992
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592757802|gb|GAXK01196611.1| (TSA: Calanus finmarchicus comp2558686_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 51.2174 bits (121), Expect = 1.550e-7
Identity = 30/83 (36.14%), Postives = 39/83 (46.99%), Query Frame = 0
Query:   37 RHRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEV 118
            +HR  C         +    P + C  C+ +LRLW       F C  R C G +K + NTG NRY CF C+ DLC  C  +E 
Sbjct:   19 QHRRQCATKLADTLAQAATHPSLSCENCKTRLRLWPEGRGGAFVCDGR-CRGGDK-ILNTGKNRYNCFLCNLDLCDVCAGREA 261          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592925345|gb|GAXK01033070.1| (TSA: Calanus finmarchicus comp1756832_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 1.759e-7
Identity = 35/98 (35.71%), Postives = 46/98 (46.94%), Query Frame = 0
Query:   37 RHRLTCILNNYTIYCKLRQTPVP----CYICRKKLRLWDLYEEFPFTCKR--RSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDE 128
            +HR  C   N     +L  TP P    C  C +KL+LW  Y+  PF C     +C   EK +   G NR++CF CDY LC  C         + S+DE
Sbjct:  338 KHRDMCAGINKD---ELELTPSPRKVWCCFCSEKLKLWPAYKMTPFRCNSGFENCPLKEKKIRCDGTNRFSCFLCDYTLCIGCVDTIDHVAKNGSADE 622          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592957199|gb|GAXK01001357.1| (TSA: Calanus finmarchicus comp660018_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 50.447 bits (119), Expect = 2.606e-7
Identity = 23/71 (32.39%), Postives = 41/71 (57.75%), Query Frame = 0
Query:   58 VPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDE 128
            + C  CR +L+LW +    PF C   +C    + + +TG NR+ CF+C++DLC +C ++++   V    +E
Sbjct:  275 IRCPKCRARLKLWPVNHGPPFACSSSNCPIVGR-IKSTGQNRFNCFSCNFDLCESCVNRKLGKTVMGWEEE 484          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592813352|gb|GAXK01141216.1| (TSA: Calanus finmarchicus comp5192560_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 47.7506 bits (112), Expect = 7.893e-7
Identity = 25/73 (34.25%), Postives = 38/73 (52.05%), Query Frame = 0
Query:   49 IYCKLRQTPVPCYICRKKLRLWDLYE-EFPFTCKRRS--CSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEV 118
            +  K+    V C  C+ KL+LW L++    F C      C      +ANTG N Y+C+ C+YDLC +C  + +
Sbjct:  185 VLAKMSIAAVKCPSCQTKLKLWTLHKLSQSFICSDTGLGCPALGAYVANTGTNWYSCYKCEYDLCDSCVQRRL 403          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592920347|gb|GAXK01038028.1| (TSA: Calanus finmarchicus comp859668_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 47.7506 bits (112), Expect = 1.730e-6
Identity = 26/76 (34.21%), Postives = 37/76 (48.68%), Query Frame = 0
Query:   39 RLTCILNNYTIYCKLRQTPVPCYICRKKLRLW-DLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTC 113
            R T  L+ +  +  +R     C  C+ KL++W D    F    +  SC    + +  +G NRY CF CDYDLC  C
Sbjct:  498 RCTAQLSTFQTHSSIR-----CAQCKDKLKIWPDQGPAFQCDSQLSSCPTMGQEIGASGGNRYNCFLCDYDLCKAC 710          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592920346|gb|GAXK01038029.1| (TSA: Calanus finmarchicus comp859668_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 43.8986 bits (102), Expect = 2.659e-5
Identity = 20/52 (38.46%), Postives = 28/52 (53.85%), Query Frame = 0
Query:   63 CRKKLRLW-DLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTC 113
            C+ KL++W D    F    +  SC    + +  +G NRY CF CDYD+C  C
Sbjct:  483 CKDKLKIWPDQGPAFQCDSQLSSCPTMGQEIGASGGNRYNCFLCDYDVCKAC 638          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592885747|gb|GAXK01072628.1| (TSA: Calanus finmarchicus comp5259834_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.9726 bits (97), Expect = 1.387e-4
Identity = 19/46 (41.30%), Postives = 25/46 (54.35%), Query Frame = 0
Query:   68 RLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTC 113
            ++W     FPFTC   +C+   KP    G  R+ CF CD+DLC  C
Sbjct:  595 KIWPKKISFPFTCDNFACT---KPALGAGALRFNCFVCDFDLCELC 723          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592857563|gb|GAXK01099999.1| (TSA: Calanus finmarchicus comp252937_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 2.460e-4
Identity = 37/111 (33.33%), Postives = 45/111 (40.54%), Query Frame = 0
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVP----CYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARV 122
            C+LC   V   +   GE     HR  C  NN     +L   P P    C  C ++LRLW   +  PF C             +TG NR  CF CD+D C  C   E   RV
Sbjct:  516 CYLCLNKVRNSDWDSGE-----HRRRCAFNNQR---ELLGFPQPYDAYCPNCSERLRLWPA-KGHPFYCDECPYDQRNVLKRSTGENRLNCFLCDFDCCVNCSGAERFQRV 821          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592760366|gb|GAXK01194047.1| (TSA: Calanus finmarchicus comp1192910_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 3.569e-4
Identity = 32/93 (34.41%), Postives = 39/93 (41.94%), Query Frame = 0
Query:   34 DWYRHRLTCILNNYTIYCKLRQTPVP----CYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARV 122
            D   HR  C   N     +L   P P    C  CR++LRLW   +  PF C     S       + G NR  CF CD+D C +C   E   RV
Sbjct:   23 DSGEHRKRCAFKNQR---ELLGFPQPYDAYCPNCRERLRLWPA-KGHPFYCDECPNSRRNVLKKSMGNNRLNCFQCDFDRCVSCADAERFQRV 289          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592916193|gb|GAXK01042182.1| (TSA: Calanus finmarchicus comp1004224_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 1.120e-3
Identity = 34/111 (30.63%), Postives = 47/111 (42.34%), Query Frame = 0
Query:   18 LCGG------IVMPVEGLEGEPDWY--RHRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLWDLYEEFPFTCKR--RSCSGFEKPMANTGY-NRYTCFACDYDLCFTCYSK 116
            LCGG        + +E + G+  W    HR  C   N          P + C  C+ +LR+W   +   FTC     SC   EK   +    NR TC+ CDY+LC  C  +
Sbjct:  158 LCGGGGDAAVCSLCLESVSGDA-WSSGEHRSQCASRNTAKLSSFPAHPHLSCTKCKGRLRVWP-AQGPKFTCDSPASSCQSGEKARQSPAQQNRLTCYLCDYNLCKLCVQR 484          
BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Match: EMLSAP00000012226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s88:488619:489085:-1 gene:EMLSAG00000012226 transcript:EMLSAT00000012226 description:"maker-LSalAtl2s88-augustus-gene-4.4")

HSP 1 Score: 276.944 bits (707), Expect = 1.377e-96
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133
            MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD
Sbjct:    1 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133          
BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Match: EMLSAP00000010557 (pep:novel supercontig:LSalAtl2s:LSalAtl2s700:194951:200781:1 gene:EMLSAG00000010557 transcript:EMLSAT00000010557 description:"snap_masked-LSalAtl2s700-processed-gene-1.19")

HSP 1 Score: 48.521 bits (114), Expect = 3.122e-8
Identity = 30/81 (37.04%), Postives = 36/81 (44.44%), Query Frame = 0
Query:   38 HRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLWDLYEEFPFTCKRRS-CSGFEKPMANTGYNRYTCFACDYDLCFTCYSK 116
            HR +C   N      L  +   PC  C K LR W      PF C   S C      + NTG NR+ CF C+YDLC  C  +
Sbjct:   30 HRKSCSDKNVIFINSLPTSDRAPCPKCGKXLRQWPEKLVTPFKCDGGSKCPNSGLLLPNTGDNRFNCFTCNYDLCHDCIKR 110          
BLAST of EMLSAG00000012226 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold68_size422247-snap-gene-1.15 (protein:Tk11390 transcript:maker-scaffold68_size422247-snap-gene-1.15-mRNA-1 annotation:"hypothetical protein L798_02492 partial")

HSP 1 Score: 53.1434 bits (126), Expect = 2.401e-9
Identity = 37/109 (33.94%), Postives = 47/109 (43.12%), Query Frame = 0
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVP---CYICRKKLRLWDLYEEFP-FTCK-RRSCSGF------EKPMANTGYNRYTCFACDYDLCFTC 113
            C+LC   +     L GE     HR+ C  N +  +      P P   C IC   L+LW      P F C   + C+        +K M N G NRY CF CD+DLC  C
Sbjct:  132 CYLCEQQIPRRYWLSGE-----HRIECA-NEHERFLDKLPAPFPSSRCPICYHPLKLWPKQLGPPEFMCSSNKKCTEMANDGVTKKSMDNAGDNRYNCFNCDFDLCIDC 234          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012226 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012226 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592757802|gb|GAXK01196611.1|1.550e-736.14TSA: Calanus finmarchicus comp2558686_c0_seq1 tran... [more]
gi|592925345|gb|GAXK01033070.1|1.759e-735.71TSA: Calanus finmarchicus comp1756832_c0_seq1 tran... [more]
gi|592957199|gb|GAXK01001357.1|2.606e-732.39TSA: Calanus finmarchicus comp660018_c0_seq1 trans... [more]
gi|592813352|gb|GAXK01141216.1|7.893e-734.25TSA: Calanus finmarchicus comp5192560_c0_seq1 tran... [more]
gi|592920347|gb|GAXK01038028.1|1.730e-634.21TSA: Calanus finmarchicus comp859668_c0_seq1 trans... [more]
gi|592920346|gb|GAXK01038029.1|2.659e-538.46TSA: Calanus finmarchicus comp859668_c0_seq2 trans... [more]
gi|592885747|gb|GAXK01072628.1|1.387e-441.30TSA: Calanus finmarchicus comp5259834_c0_seq1 tran... [more]
gi|592857563|gb|GAXK01099999.1|2.460e-433.33TSA: Calanus finmarchicus comp252937_c0_seq1 trans... [more]
gi|592760366|gb|GAXK01194047.1|3.569e-434.41TSA: Calanus finmarchicus comp1192910_c0_seq1 tran... [more]
gi|592916193|gb|GAXK01042182.1|1.120e-330.63TSA: Calanus finmarchicus comp1004224_c0_seq1 tran... [more]

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BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000122261.377e-96100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s88:488619... [more]
EMLSAP000000105573.122e-837.04pep:novel supercontig:LSalAtl2s:LSalAtl2s700:19495... [more]
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BLAST of EMLSAG00000012226 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012226 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012226 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012226 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold68_size422247-snap-gene-1.152.401e-933.94protein:Tk11390 transcript:maker-scaffold68_size42... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s88supercontigLSalAtl2s88:488619..489085 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s88-augustus-gene-4.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012226 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012226EMLSAT00000012226-708073Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s88:488619..489085-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012226-694992 ID=EMLSAG00000012226-694992|Name=EMLSAG00000012226|organism=Lepeophtheirus salmonis|type=gene|length=467bp|location=Sequence derived from alignment at LSalAtl2s88:488619..489085- (Lepeophtheirus salmonis)
ATGTTTGCAAACCTAGTGAGTAAAGTTCTTTTTAGATCCTTTTATTGTCA CCTCTGCGGTGGGATCGTTATGCCTGTGGAGGGGTTAGAGGGAGAACCAG ATTGGTATCGTCATCGCCTCACTTGTATCCTTAATAATTACACTATTTAC TGTAAATTGAGACAAACTCCCGTGCCTTGTTACATCTGTAGAAAAAAGTT GAGACTTTGGGATTTGTACGAGGAGTTTCCATTTACGTGTAAAAGACGCA GCTGTTCCGGGTAATTACGTTTCTTTTTATCATATAGTAAGGCAAAGTTA TTAACAACTTAATCTTTTATGATAGATTCGAAAAGCCAATGGCAAATACA GGCTACAATCGCTATACTTGCTTTGCTTGTGACTATGATCTTTGTTTTAC GTGTTATTCAAAAGAAGTCCCAGCAAGAGTCAGCTACTCTTCTGATGAAT ATCTCGAGAGCGATTGA
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