EMLSAG00000012226, EMLSAG00000012226-694992 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592882172|gb|GAXK01076183.1| (TSA: Calanus finmarchicus comp2600457_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.5058 bits (88), Expect = 1.700e-3 Identity = 32/101 (31.68%), Postives = 44/101 (43.56%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGY--NRYTCFACDYDLCFTC 113 C+LC V L G+ HR C P V C C++K++LW ++ PFTC + G + G+ RY CF CDY+LC C Sbjct: 168 CYLCEEDVSTEGWLSGD-----HRRGCASRQTVKISSFPSHPTVDCRHCKRKMKLW-PEQDTPFTCDACTYDGSD------GFYVTRYHCFPCDYNLCNDC 434
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592948689|gb|GAXK01009864.1| (TSA: Calanus finmarchicus comp5205164_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 3.907e-2 Identity = 23/70 (32.86%), Postives = 28/70 (40.00%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSC 85 C+LC V P G W HR C N I + C CR KL++W FPF C +C Sbjct: 2 CYLCQSRV-PYSG------WGHHRSICAYQNGKIIQGMPSVLARCENCRGKLKIWPKKLSFPFICDNFAC 190
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592920060|gb|GAXK01038315.1| (TSA: Calanus finmarchicus comp3246109_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 2.817e-1 Identity = 22/69 (31.88%), Postives = 27/69 (39.13%), Query Frame = 0 Query: 37 RHRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLW-DLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCF 103 HR+ C N P + C C+ KLR W D F SC +A+ G NRY CF Sbjct: 209 NHRVACASRNTAQLSSFPTHPSIRCAKCQDKLRTWPDQGPSFYCDSLLPSCRNNNHQLASHGGNRYNCF 415
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592930112|gb|GAXK01028433.1| (TSA: Calanus finmarchicus comp829056_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 4.324e-1 Identity = 19/76 (25.00%), Postives = 37/76 (48.68%), Query Frame = 0 Query: 38 HRLTCILNNYTIYCKLRQTPV-PCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFT 112 HR++C+ + Y + + + C C+K L+LW + ++ +C+ + N G N + CFAC + +T Sbjct: 470 HRISCLEKKRSEYESIPSSSLYRCTKCQKNLKLWPSEK-----VRKTTCTNCGHMIYNNGGNVHICFACAGEGSYT 682
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592930111|gb|GAXK01028434.1| (TSA: Calanus finmarchicus comp829056_c0_seq2 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 1.207e+0 Identity = 21/78 (26.92%), Postives = 35/78 (44.87%), Query Frame = 0 Query: 36 YRHRLTCILNNYTIYCKLRQTPV-PCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFT 112 + HR +C++ N + Y + + + C C+K L+LW + TC + + N G N + CF C FT Sbjct: 37 HSHRKSCLVQNRSEYESIPSSSLYRCTKCQKNLKLWPSEKVSDTTCTK-----CRHVIYNNGANVHICFPCAGKGSFT 255
BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Match: EMLSAP00000012226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s88:488619:489085:-1 gene:EMLSAG00000012226 transcript:EMLSAT00000012226 description:"maker-LSalAtl2s88-augustus-gene-4.4") HSP 1 Score: 276.944 bits (707), Expect = 1.377e-96 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 Query: 1 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD Sbjct: 1 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133
BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Match: EMLSAP00000010557 (pep:novel supercontig:LSalAtl2s:LSalAtl2s700:194951:200781:1 gene:EMLSAG00000010557 transcript:EMLSAT00000010557 description:"snap_masked-LSalAtl2s700-processed-gene-1.19") HSP 1 Score: 48.521 bits (114), Expect = 3.122e-8 Identity = 30/81 (37.04%), Postives = 36/81 (44.44%), Query Frame = 0 Query: 38 HRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLWDLYEEFPFTCKRRS-CSGFEKPMANTGYNRYTCFACDYDLCFTCYSK 116 HR +C N L + PC C K LR W PF C S C + NTG NR+ CF C+YDLC C + Sbjct: 30 HRKSCSDKNVIFINSLPTSDRAPCPKCGKXLRQWPEKLVTPFKCDGGSKCPNSGLLLPNTGDNRFNCFTCNYDLCHDCIKR 110
BLAST of EMLSAG00000012226 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold68_size422247-snap-gene-1.15 (protein:Tk11390 transcript:maker-scaffold68_size422247-snap-gene-1.15-mRNA-1 annotation:"hypothetical protein L798_02492 partial") HSP 1 Score: 53.1434 bits (126), Expect = 2.401e-9 Identity = 37/109 (33.94%), Postives = 47/109 (43.12%), Query Frame = 0 Query: 16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVP---CYICRKKLRLWDLYEEFP-FTCK-RRSCSGF------EKPMANTGYNRYTCFACDYDLCFTC 113 C+LC + L GE HR+ C N + + P P C IC L+LW P F C + C+ +K M N G NRY CF CD+DLC C Sbjct: 132 CYLCEQQIPRRYWLSGE-----HRIECA-NEHERFLDKLPAPFPSSRCPICYHPLKLWPKQLGPPEFMCSSNKKCTEMANDGVTKKSMDNAGDNRYNCFNCDFDLCIDC 234 The following BLAST results are available for this feature:
BLAST of EMLSAG00000012226 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000012226 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000012226 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000012226 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000012226 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s88:488619..489085- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000012226-694992 ID=EMLSAG00000012226-694992|Name=EMLSAG00000012226|organism=Lepeophtheirus salmonis|type=gene|length=467bp|location=Sequence derived from alignment at LSalAtl2s88:488619..489085- (Lepeophtheirus salmonis)back to top Add to Basket
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