EMLSAG00000012226, EMLSAG00000012226-694992 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012226
Unique NameEMLSAG00000012226-694992
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592882172|gb|GAXK01076183.1| (TSA: Calanus finmarchicus comp2600457_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 38.5058 bits (88), Expect = 1.700e-3
Identity = 32/101 (31.68%), Postives = 44/101 (43.56%), Query Frame = 0
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGY--NRYTCFACDYDLCFTC 113
            C+LC   V     L G+     HR  C              P V C  C++K++LW   ++ PFTC   +  G +      G+   RY CF CDY+LC  C
Sbjct:  168 CYLCEEDVSTEGWLSGD-----HRRGCASRQTVKISSFPSHPTVDCRHCKRKMKLW-PEQDTPFTCDACTYDGSD------GFYVTRYHCFPCDYNLCNDC 434          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592948689|gb|GAXK01009864.1| (TSA: Calanus finmarchicus comp5205164_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 3.907e-2
Identity = 23/70 (32.86%), Postives = 28/70 (40.00%), Query Frame = 0
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSC 85
            C+LC   V P  G      W  HR  C   N  I   +      C  CR KL++W     FPF C   +C
Sbjct:    2 CYLCQSRV-PYSG------WGHHRSICAYQNGKIIQGMPSVLARCENCRGKLKIWPKKLSFPFICDNFAC 190          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592920060|gb|GAXK01038315.1| (TSA: Calanus finmarchicus comp3246109_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 2.817e-1
Identity = 22/69 (31.88%), Postives = 27/69 (39.13%), Query Frame = 0
Query:   37 RHRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLW-DLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCF 103
             HR+ C   N          P + C  C+ KLR W D    F       SC      +A+ G NRY CF
Sbjct:  209 NHRVACASRNTAQLSSFPTHPSIRCAKCQDKLRTWPDQGPSFYCDSLLPSCRNNNHQLASHGGNRYNCF 415          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592930112|gb|GAXK01028433.1| (TSA: Calanus finmarchicus comp829056_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 4.324e-1
Identity = 19/76 (25.00%), Postives = 37/76 (48.68%), Query Frame = 0
Query:   38 HRLTCILNNYTIYCKLRQTPV-PCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFT 112
            HR++C+    + Y  +  + +  C  C+K L+LW   +      ++ +C+     + N G N + CFAC  +  +T
Sbjct:  470 HRISCLEKKRSEYESIPSSSLYRCTKCQKNLKLWPSEK-----VRKTTCTNCGHMIYNNGGNVHICFACAGEGSYT 682          
BLAST of EMLSAG00000012226 vs. C. finmarchicus
Match: gi|592930111|gb|GAXK01028434.1| (TSA: Calanus finmarchicus comp829056_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 1.207e+0
Identity = 21/78 (26.92%), Postives = 35/78 (44.87%), Query Frame = 0
Query:   36 YRHRLTCILNNYTIYCKLRQTPV-PCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFT 112
            + HR +C++ N + Y  +  + +  C  C+K L+LW   +    TC +         + N G N + CF C     FT
Sbjct:   37 HSHRKSCLVQNRSEYESIPSSSLYRCTKCQKNLKLWPSEKVSDTTCTK-----CRHVIYNNGANVHICFPCAGKGSFT 255          
BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Match: EMLSAP00000012226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s88:488619:489085:-1 gene:EMLSAG00000012226 transcript:EMLSAT00000012226 description:"maker-LSalAtl2s88-augustus-gene-4.4")

HSP 1 Score: 276.944 bits (707), Expect = 1.377e-96
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133
            MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD
Sbjct:    1 MFANLVSKVLFRSFYCHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVPCYICRKKLRLWDLYEEFPFTCKRRSCSGFEKPMANTGYNRYTCFACDYDLCFTCYSKEVPARVSYSSDEYLESD 133          
BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Match: EMLSAP00000010557 (pep:novel supercontig:LSalAtl2s:LSalAtl2s700:194951:200781:1 gene:EMLSAG00000010557 transcript:EMLSAT00000010557 description:"snap_masked-LSalAtl2s700-processed-gene-1.19")

HSP 1 Score: 48.521 bits (114), Expect = 3.122e-8
Identity = 30/81 (37.04%), Postives = 36/81 (44.44%), Query Frame = 0
Query:   38 HRLTCILNNYTIYCKLRQTP-VPCYICRKKLRLWDLYEEFPFTCKRRS-CSGFEKPMANTGYNRYTCFACDYDLCFTCYSK 116
            HR +C   N      L  +   PC  C K LR W      PF C   S C      + NTG NR+ CF C+YDLC  C  +
Sbjct:   30 HRKSCSDKNVIFINSLPTSDRAPCPKCGKXLRQWPEKLVTPFKCDGGSKCPNSGLLLPNTGDNRFNCFTCNYDLCHDCIKR 110          
BLAST of EMLSAG00000012226 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold68_size422247-snap-gene-1.15 (protein:Tk11390 transcript:maker-scaffold68_size422247-snap-gene-1.15-mRNA-1 annotation:"hypothetical protein L798_02492 partial")

HSP 1 Score: 53.1434 bits (126), Expect = 2.401e-9
Identity = 37/109 (33.94%), Postives = 47/109 (43.12%), Query Frame = 0
Query:   16 CHLCGGIVMPVEGLEGEPDWYRHRLTCILNNYTIYCKLRQTPVP---CYICRKKLRLWDLYEEFP-FTCK-RRSCSGF------EKPMANTGYNRYTCFACDYDLCFTC 113
            C+LC   +     L GE     HR+ C  N +  +      P P   C IC   L+LW      P F C   + C+        +K M N G NRY CF CD+DLC  C
Sbjct:  132 CYLCEQQIPRRYWLSGE-----HRIECA-NEHERFLDKLPAPFPSSRCPICYHPLKLWPKQLGPPEFMCSSNKKCTEMANDGVTKKSMDNAGDNRYNCFNCDFDLCIDC 234          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012226 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012226 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592882172|gb|GAXK01076183.1|1.700e-331.68TSA: Calanus finmarchicus comp2600457_c0_seq1 tran... [more]
gi|592948689|gb|GAXK01009864.1|3.907e-232.86TSA: Calanus finmarchicus comp5205164_c0_seq1 tran... [more]
gi|592920060|gb|GAXK01038315.1|2.817e-131.88TSA: Calanus finmarchicus comp3246109_c0_seq1 tran... [more]
gi|592930112|gb|GAXK01028433.1|4.324e-125.00TSA: Calanus finmarchicus comp829056_c0_seq1 trans... [more]
gi|592930111|gb|GAXK01028434.1|1.207e+026.92TSA: Calanus finmarchicus comp829056_c0_seq2 trans... [more]

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BLAST of EMLSAG00000012226 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000122261.377e-96100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s88:488619... [more]
EMLSAP000000105573.122e-837.04pep:novel supercontig:LSalAtl2s:LSalAtl2s700:19495... [more]
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BLAST of EMLSAG00000012226 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012226 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012226 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012226 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold68_size422247-snap-gene-1.152.401e-933.94protein:Tk11390 transcript:maker-scaffold68_size42... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s88supercontigLSalAtl2s88:488619..489085 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s88-augustus-gene-4.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012226 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012226EMLSAT00000012226-708073Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s88:488619..489085-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012226-694992 ID=EMLSAG00000012226-694992|Name=EMLSAG00000012226|organism=Lepeophtheirus salmonis|type=gene|length=467bp|location=Sequence derived from alignment at LSalAtl2s88:488619..489085- (Lepeophtheirus salmonis)
ATGTTTGCAAACCTAGTGAGTAAAGTTCTTTTTAGATCCTTTTATTGTCA CCTCTGCGGTGGGATCGTTATGCCTGTGGAGGGGTTAGAGGGAGAACCAG ATTGGTATCGTCATCGCCTCACTTGTATCCTTAATAATTACACTATTTAC TGTAAATTGAGACAAACTCCCGTGCCTTGTTACATCTGTAGAAAAAAGTT GAGACTTTGGGATTTGTACGAGGAGTTTCCATTTACGTGTAAAAGACGCA GCTGTTCCGGGTAATTACGTTTCTTTTTATCATATAGTAAGGCAAAGTTA TTAACAACTTAATCTTTTATGATAGATTCGAAAAGCCAATGGCAAATACA GGCTACAATCGCTATACTTGCTTTGCTTGTGACTATGATCTTTGTTTTAC GTGTTATTCAAAAGAAGTCCCAGCAAGAGTCAGCTACTCTTCTGATGAAT ATCTCGAGAGCGATTGA
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