EMLSAG00000012613, EMLSAG00000012613-695379 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012613
Unique NameEMLSAG00000012613-695379
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592828585|gb|GAXK01128676.1| (TSA: Calanus finmarchicus comp1506094_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 54.6842 bits (130), Expect = 1.318e-8
Identity = 41/114 (35.96%), Postives = 58/114 (50.88%), Query Frame = 0
Query:   45 DPNSNIKESK-CPPMLDSVCAVLYDEEDCY---------------------KNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
            DP+   + S+ C P+ DS CAV YD  DCY                     +NDI++  V+ GCT   F DS FS   IS  AA  +  V L D   ++++D+D +IES++C C
Sbjct:  797 DPDEVWRPSQYCKPVPDSFCAVAYDSHDCYAGWSLNITDGAQLSFGIFSSQRNDIDTVGVKAGCTFTGFSDSSFSGTNISIYAALTEKWVVLADE--ERYKDMDENIESLQCVC 1132          
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592760222|gb|GAXK01194191.1| (TSA: Calanus finmarchicus comp1890308_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 51.9878 bits (123), Expect = 1.165e-7
Identity = 36/122 (29.51%), Postives = 59/122 (48.36%), Query Frame = 0
Query:   38 SGQQRRIDPNSNIKESKCPPMLDSVCAVLYDEEDC-----------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
            S + + I+ +S +    C P+ +S CAV YD+ DC                       Y+ND+E+  V+ GC+L+ F DS ++   +   A   D  V L D   + F+ + ND+ES++C C
Sbjct:  156 SFEFQAINESSAVPYPTCSPVPESACAVAYDKHDCIGGWKLVIPQGQVRFRWFTSYWKYRNDMETVGVKAGCSLQLFSDSSYNHYTVGVEARTSDRWVVLAD--TEGFQHMKNDVESLQCFC 515          
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592902891|gb|GAXK01055484.1| (TSA: Calanus finmarchicus comp84655_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 51.2174 bits (121), Expect = 2.563e-7
Identity = 42/105 (40.00%), Postives = 52/105 (49.52%), Query Frame = 0
Query:   55 CPPMLDSVCAVLYDEEDC-----------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
            C  +  S CAV+YDE+DC                       Y+NDIE+  VR GCTL AF DS F+ D IS  A   D  V L D  + K+  +  DIESV+C C
Sbjct: 2125 CEEIPRSACAVVYDEKDCLSGWKLIIPQGELRFKWMSAYYAYRNDIETIGVRSGCTLTAFSDSSFNGDRISIPAPEYDRWVALGD--DAKYLHMHEDIESVQCVC 2433          
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592870293|gb|GAXK01087269.1| (TSA: Calanus finmarchicus comp217910_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 47.7506 bits (112), Expect = 2.015e-6
Identity = 38/107 (35.51%), Postives = 53/107 (49.53%), Query Frame = 0
Query:   54 KCPPMLDSVCAVLYDEEDC------------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
            KC  +   +CAV+YD+ +C                        Y+NDIE  +VR GCT   F+DSDF+ + ++  A   D  V L+D  +  + DLD DIESV C C
Sbjct:  136 KCTAVPSHLCAVVYDDGNCRGWKLEIPVGEKQFKAWDMIGGFWYRNDIEQVSVRSGCTFTGFEDSDFNGESVTIRAGDEDRHVELNDFND--YADLDEDIESVTCVC 450          
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592820058|gb|GAXK01134510.1| (TSA: Calanus finmarchicus comp92247_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 40.817 bits (94), Expect = 1.473e-4
Identity = 33/116 (28.45%), Postives = 50/116 (43.10%), Query Frame = 0
Query:   44 IDPNSNIKESKCPPMLDSVCAVLYDEEDC-----------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
            + P  + +   C  +  S CA+ YD   C                       Y+ND+++  VR GCT   + DS F+ D I   A   D  V   DH   +++ +D DIES++C C
Sbjct:   63 VQPMRDERPPGCDVVPSSACAIGYDSGTCSGGWKLVIPMGELRFRWFSSYFSYRNDMDTIGVRAGCTFTGYSDSSFNGDRIDIKADSYDRWVVFADHA--QYKHMDGDIESLRCVC 404          
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592840591|gb|GAXK01116953.1| (TSA: Calanus finmarchicus comp490843_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 2.378e-4
Identity = 32/108 (29.63%), Postives = 48/108 (44.44%), Query Frame = 0
Query:   52 ESKCPPMLDSVCAVLYDEEDC-----------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
             +KC P+  ++CAV+YD+  C                       Y+NDIE  +VR GCT   +DDS  +   +   A   D  V L    + ++  +D  I+SV C C
Sbjct:  191 RTKCMPVPYNLCAVVYDDGGCEGWKLDIPEGDMMFKWWNPAKVWYRNDIEQVSVRAGCTFTGYDDSSLNGRTMVVRAVNKDRHVEL--ASDAEYRGMDEQIQSVSCTC 508          
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592886415|gb|GAXK01071960.1| (TSA: Calanus finmarchicus comp550727_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 1.543e-3
Identity = 32/110 (29.09%), Postives = 41/110 (37.27%), Query Frame = 0
Query:   51 KESKCPPMLDSVCAVLYDEEDC------------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
            +  KC  M    CAVL+D   C                        Y+NDI++  V+ GCT   F  S F    I   A   D  + L   KN  +     DIES +C C
Sbjct: 1217 RPWKCAEMEAGTCAVLHDSGTCAGGWELRVTPGTQRRFLYFSSDWKYRNDIDTIGVKSGCTFTGFTRSSFDGRQIVLPAGSADRWIVL---KNRPYNSFHEDIESFQCVC 1537          
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592886416|gb|GAXK01071959.1| (TSA: Calanus finmarchicus comp550727_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 1.547e-3
Identity = 32/110 (29.09%), Postives = 41/110 (37.27%), Query Frame = 0
Query:   51 KESKCPPMLDSVCAVLYDEEDC------------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
            +  KC  M    CAVL+D   C                        Y+NDI++  V+ GCT   F  S F    I   A   D  + L   KN  +     DIES +C C
Sbjct: 1241 RPWKCAEMEAGTCAVLHDSGTCAGGWELRVTPGTQRRFLYFSSDWKYRNDIDTIGVKSGCTFTGFTRSSFDGRQIVLPAGSADRWIVL---KNRPYNSFHEDIESFQCVC 1561          
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592886417|gb|GAXK01071958.1| (TSA: Calanus finmarchicus comp550727_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 1.549e-3
Identity = 32/110 (29.09%), Postives = 41/110 (37.27%), Query Frame = 0
Query:   51 KESKCPPMLDSVCAVLYDEEDC------------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
            +  KC  M    CAVL+D   C                        Y+NDI++  V+ GCT   F  S F    I   A   D  + L   KN  +     DIES +C C
Sbjct: 1253 RPWKCAEMEAGTCAVLHDSGTCAGGWELRVTPGTQRRFLYFSSDWKYRNDIDTIGVKSGCTFTGFTRSSFDGRQIVLPAGSADRWIVL---KNRPYNSFHEDIESFQCVC 1573          
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592833005|gb|GAXK01124539.1| (TSA: Calanus finmarchicus comp24864_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.2762 bits (90), Expect = 1.551e-3
Identity = 35/110 (31.82%), Postives = 53/110 (48.18%), Query Frame = 0
Query:   50 IKESKCPPMLDSVCAVLYDEEDC-----------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
            +  SKC P+ D++CA++YD+  C                       Y+NDIE+ +VR GCT   FDDS  + + ++  A   D  V L+D    +  D D  I+S+ C C
Sbjct:  124 LSRSKCVPVPDNLCAMVYDDGGCKGWKLDIQEGEVMFKWWDPVYYWYRNDIEAVSVRAGCTFTGFDDSSLNGESMTVRAGNKDRHVELNDEDEFE--DFDEAIQSISCTC 447          
BLAST of EMLSAG00000012613 vs. L. salmonis peptides
Match: EMLSAP00000012613 (pep:novel supercontig:LSalAtl2s:LSalAtl2s94:399499:399993:-1 gene:EMLSAG00000012613 transcript:EMLSAT00000012613 description:"maker-LSalAtl2s94-snap-gene-4.3")

HSP 1 Score: 278.485 bits (711), Expect = 4.104e-97
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
Query:    1 MDARSHHKSYHMYKNLDRKSLVDRISSVMCTCPGLDPSGQQRRIDPNSNIKESKCPPMLDSVCAVLYDEEDCYKNDIESFTVREGCTLEAFDDSDFSDDGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
            MDARSHHKSYHMYKNLDRKSLVDRISSVMCTCPGLDPSGQQRRIDPNSNIKESKCPPMLDSVCAVLYDEEDCYKNDIESFTVREGCTLEAFDDSDFSDDGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC
Sbjct:    1 MDARSHHKSYHMYKNLDRKSLVDRISSVMCTCPGLDPSGQQRRIDPNSNIKESKCPPMLDSVCAVLYDEEDCYKNDIESFTVREGCTLEAFDDSDFSDDGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136          
BLAST of EMLSAG00000012613 vs. L. salmonis peptides
Match: EMLSAP00000004691 (pep:novel supercontig:LSalAtl2s:LSalAtl2s245:667741:668821:1 gene:EMLSAG00000004691 transcript:EMLSAT00000004691 description:"maker-LSalAtl2s245-augustus-gene-5.12")

HSP 1 Score: 147.132 bits (370), Expect = 5.570e-44
Identity = 88/170 (51.76%), Postives = 106/170 (62.35%), Query Frame = 0
Query:    1 MDARSHHKSYHMYKNLDRKSLVDRISSVMCTCPGLDPSGQQRR-----IDPNSNIKESKCPPMLDSVCAVLYDEEDC-----------------------------YKNDIESFTVREGCTLEAFDDSDFSDDGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
            MDAR+  K Y+M+KNLDR SLVD ISS+ C C G     +QRR     IDP SNI+ SKCPPM    CAVL+DEE+C                             YKN++ESF VREGC  EA+DDSD+SDDGI   A  GDLL+NL+ H+NDK+E L+NDIESV+C C
Sbjct:  104 MDARNFFKPYNMWKNLDRNSLVDDISSIECECFGDKELNEQRREERRAIDPGSNIESSKCPPMPRHACAVLFDEENCRNDDWDNSIVLADGEDRSFSLFNSMMNFKYKNEVESFMVREGCIFEAYDDSDYSDDGIRVRALNGDLLINLNSHRNDKYESLNNDIESVRCFC 273          
BLAST of EMLSAG00000012613 vs. L. salmonis peptides
Match: EMLSAP00000010465 (pep:novel supercontig:LSalAtl2s:LSalAtl2s695:72746:87766:1 gene:EMLSAG00000010465 transcript:EMLSAT00000010465 description:"maker-LSalAtl2s695-snap-gene-1.18")

HSP 1 Score: 56.225 bits (134), Expect = 5.352e-11
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 0
Query:    1 MDARSHHKSYHMYKNLDRKSLVDRISSVMCTCP---------GLDPSGQQRRIDPNSNIKESKCPPMLDSV 62
            +D R+  K Y+ +KNLDRKSL D ISSV+C CP         G    G+ ++IDP SNI  SKCP +  S+
Sbjct:   99 LDGRNFDKPYNRWKNLDRKSLNDEISSVVCECPDEKTSGSSNGGSSIGRPKKIDPASNIDGSKCPTIPVSI 169          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012613 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012613 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 20
Match NameE-valueIdentityDescription
gi|592828585|gb|GAXK01128676.1|1.318e-835.96TSA: Calanus finmarchicus comp1506094_c0_seq1 tran... [more]
gi|592760222|gb|GAXK01194191.1|1.165e-729.51TSA: Calanus finmarchicus comp1890308_c0_seq1 tran... [more]
gi|592902891|gb|GAXK01055484.1|2.563e-740.00TSA: Calanus finmarchicus comp84655_c1_seq1 transc... [more]
gi|592870293|gb|GAXK01087269.1|2.015e-635.51TSA: Calanus finmarchicus comp217910_c1_seq1 trans... [more]
gi|592820058|gb|GAXK01134510.1|1.473e-428.45TSA: Calanus finmarchicus comp92247_c2_seq4 transc... [more]
gi|592840591|gb|GAXK01116953.1|2.378e-429.63TSA: Calanus finmarchicus comp490843_c0_seq1 trans... [more]
gi|592886415|gb|GAXK01071960.1|1.543e-329.09TSA: Calanus finmarchicus comp550727_c0_seq3 trans... [more]
gi|592886416|gb|GAXK01071959.1|1.547e-329.09TSA: Calanus finmarchicus comp550727_c0_seq2 trans... [more]
gi|592886417|gb|GAXK01071958.1|1.549e-329.09TSA: Calanus finmarchicus comp550727_c0_seq1 trans... [more]
gi|592833005|gb|GAXK01124539.1|1.551e-331.82TSA: Calanus finmarchicus comp24864_c0_seq1 transc... [more]

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BLAST of EMLSAG00000012613 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000126134.104e-97100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s94:399499... [more]
EMLSAP000000046915.570e-4451.76pep:novel supercontig:LSalAtl2s:LSalAtl2s245:66774... [more]
EMLSAP000000104655.352e-1146.48pep:novel supercontig:LSalAtl2s:LSalAtl2s695:72746... [more]
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BLAST of EMLSAG00000012613 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012613 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012613 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012613 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s94supercontigLSalAtl2s94:399499..399993 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s94-snap-gene-4.3
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012613 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012613EMLSAT00000012613-708460Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s94:399499..399993-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012613-695379 ID=EMLSAG00000012613-695379|Name=EMLSAG00000012613|organism=Lepeophtheirus salmonis|type=gene|length=495bp|location=Sequence derived from alignment at LSalAtl2s94:399499..399993- (Lepeophtheirus salmonis)
ATGGATGCCCGGAGTCATCATAAGTCCTATCACATGTACAAAAACTTGGA TCGGAAATCTCTGGTTGATCGAATTAGCTCTGTTATGTGTACTTGCCCTG GTCTTGATCCAAGCGGACAACAGAGACGCATTGACCCTAACTCAAATATT AAGGAGTCGAAGTGTCCCCCAATGCTGGACAGTGTTTGTGCTGTTCTCTA TGATGAGGAGGACTGTGTAAGTGATGACTTTGATCCTATTTATTTGAGTA ACGGAGAAGAAAGATCCTTTTCTAGTTTGATCTCTTTATCGAATATCAAG TATAAAAATGACATTGAGTCATTTACTGTGAGAGAGGGTTGTACTCTTGA GGCTTTTGACGATTCAGACTTTTCAGATGATGGAATTAGTGCGGTTGCCG CCAGAGGCGATCTCCTTGTTAATTTGGACGACCATAAAAACGATAAATTT GAGGATTTAGACAACGATATTGAGTCTGTAAAATGTCATTGCTAA
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