EMLSAG00000012613, EMLSAG00000012613-695379 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592828585|gb|GAXK01128676.1| (TSA: Calanus finmarchicus comp1506094_c0_seq1 transcribed RNA sequence) HSP 1 Score: 54.6842 bits (130), Expect = 1.318e-8 Identity = 41/114 (35.96%), Postives = 58/114 (50.88%), Query Frame = 0 Query: 45 DPNSNIKESK-CPPMLDSVCAVLYDEEDCY---------------------KNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136 DP+ + S+ C P+ DS CAV YD DCY +NDI++ V+ GCT F DS FS IS AA + V L D ++++D+D +IES++C C Sbjct: 797 DPDEVWRPSQYCKPVPDSFCAVAYDSHDCYAGWSLNITDGAQLSFGIFSSQRNDIDTVGVKAGCTFTGFSDSSFSGTNISIYAALTEKWVVLADE--ERYKDMDENIESLQCVC 1132
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592760222|gb|GAXK01194191.1| (TSA: Calanus finmarchicus comp1890308_c0_seq1 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 1.165e-7 Identity = 36/122 (29.51%), Postives = 59/122 (48.36%), Query Frame = 0 Query: 38 SGQQRRIDPNSNIKESKCPPMLDSVCAVLYDEEDC-----------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136 S + + I+ +S + C P+ +S CAV YD+ DC Y+ND+E+ V+ GC+L+ F DS ++ + A D V L D + F+ + ND+ES++C C Sbjct: 156 SFEFQAINESSAVPYPTCSPVPESACAVAYDKHDCIGGWKLVIPQGQVRFRWFTSYWKYRNDMETVGVKAGCSLQLFSDSSYNHYTVGVEARTSDRWVVLAD--TEGFQHMKNDVESLQCFC 515
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592902891|gb|GAXK01055484.1| (TSA: Calanus finmarchicus comp84655_c1_seq1 transcribed RNA sequence) HSP 1 Score: 51.2174 bits (121), Expect = 2.563e-7 Identity = 42/105 (40.00%), Postives = 52/105 (49.52%), Query Frame = 0 Query: 55 CPPMLDSVCAVLYDEEDC-----------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136 C + S CAV+YDE+DC Y+NDIE+ VR GCTL AF DS F+ D IS A D V L D + K+ + DIESV+C C Sbjct: 2125 CEEIPRSACAVVYDEKDCLSGWKLIIPQGELRFKWMSAYYAYRNDIETIGVRSGCTLTAFSDSSFNGDRISIPAPEYDRWVALGD--DAKYLHMHEDIESVQCVC 2433
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592870293|gb|GAXK01087269.1| (TSA: Calanus finmarchicus comp217910_c1_seq1 transcribed RNA sequence) HSP 1 Score: 47.7506 bits (112), Expect = 2.015e-6 Identity = 38/107 (35.51%), Postives = 53/107 (49.53%), Query Frame = 0 Query: 54 KCPPMLDSVCAVLYDEEDC------------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136 KC + +CAV+YD+ +C Y+NDIE +VR GCT F+DSDF+ + ++ A D V L+D + + DLD DIESV C C Sbjct: 136 KCTAVPSHLCAVVYDDGNCRGWKLEIPVGEKQFKAWDMIGGFWYRNDIEQVSVRSGCTFTGFEDSDFNGESVTIRAGDEDRHVELNDFND--YADLDEDIESVTCVC 450
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592820058|gb|GAXK01134510.1| (TSA: Calanus finmarchicus comp92247_c2_seq4 transcribed RNA sequence) HSP 1 Score: 40.817 bits (94), Expect = 1.473e-4 Identity = 33/116 (28.45%), Postives = 50/116 (43.10%), Query Frame = 0 Query: 44 IDPNSNIKESKCPPMLDSVCAVLYDEEDC-----------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136 + P + + C + S CA+ YD C Y+ND+++ VR GCT + DS F+ D I A D V DH +++ +D DIES++C C Sbjct: 63 VQPMRDERPPGCDVVPSSACAIGYDSGTCSGGWKLVIPMGELRFRWFSSYFSYRNDMDTIGVRAGCTFTGYSDSSFNGDRIDIKADSYDRWVVFADHA--QYKHMDGDIESLRCVC 404
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592840591|gb|GAXK01116953.1| (TSA: Calanus finmarchicus comp490843_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.2022 bits (95), Expect = 2.378e-4 Identity = 32/108 (29.63%), Postives = 48/108 (44.44%), Query Frame = 0 Query: 52 ESKCPPMLDSVCAVLYDEEDC-----------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136 +KC P+ ++CAV+YD+ C Y+NDIE +VR GCT +DDS + + A D V L + ++ +D I+SV C C Sbjct: 191 RTKCMPVPYNLCAVVYDDGGCEGWKLDIPEGDMMFKWWNPAKVWYRNDIEQVSVRAGCTFTGYDDSSLNGRTMVVRAVNKDRHVEL--ASDAEYRGMDEQIQSVSCTC 508
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592886415|gb|GAXK01071960.1| (TSA: Calanus finmarchicus comp550727_c0_seq3 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 1.543e-3 Identity = 32/110 (29.09%), Postives = 41/110 (37.27%), Query Frame = 0 Query: 51 KESKCPPMLDSVCAVLYDEEDC------------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136 + KC M CAVL+D C Y+NDI++ V+ GCT F S F I A D + L KN + DIES +C C Sbjct: 1217 RPWKCAEMEAGTCAVLHDSGTCAGGWELRVTPGTQRRFLYFSSDWKYRNDIDTIGVKSGCTFTGFTRSSFDGRQIVLPAGSADRWIVL---KNRPYNSFHEDIESFQCVC 1537
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592886416|gb|GAXK01071959.1| (TSA: Calanus finmarchicus comp550727_c0_seq2 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 1.547e-3 Identity = 32/110 (29.09%), Postives = 41/110 (37.27%), Query Frame = 0 Query: 51 KESKCPPMLDSVCAVLYDEEDC------------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136 + KC M CAVL+D C Y+NDI++ V+ GCT F S F I A D + L KN + DIES +C C Sbjct: 1241 RPWKCAEMEAGTCAVLHDSGTCAGGWELRVTPGTQRRFLYFSSDWKYRNDIDTIGVKSGCTFTGFTRSSFDGRQIVLPAGSADRWIVL---KNRPYNSFHEDIESFQCVC 1561
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592886417|gb|GAXK01071958.1| (TSA: Calanus finmarchicus comp550727_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 1.549e-3 Identity = 32/110 (29.09%), Postives = 41/110 (37.27%), Query Frame = 0 Query: 51 KESKCPPMLDSVCAVLYDEEDC------------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136 + KC M CAVL+D C Y+NDI++ V+ GCT F S F I A D + L KN + DIES +C C Sbjct: 1253 RPWKCAEMEAGTCAVLHDSGTCAGGWELRVTPGTQRRFLYFSSDWKYRNDIDTIGVKSGCTFTGFTRSSFDGRQIVLPAGSADRWIVL---KNRPYNSFHEDIESFQCVC 1573
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Match: gi|592833005|gb|GAXK01124539.1| (TSA: Calanus finmarchicus comp24864_c0_seq1 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 1.551e-3 Identity = 35/110 (31.82%), Postives = 53/110 (48.18%), Query Frame = 0 Query: 50 IKESKCPPMLDSVCAVLYDEEDC-----------------------YKNDIESFTVREGCTLEAXXXXXXXXXGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136 + SKC P+ D++CA++YD+ C Y+NDIE+ +VR GCT FDDS + + ++ A D V L+D + D D I+S+ C C Sbjct: 124 LSRSKCVPVPDNLCAMVYDDGGCKGWKLDIQEGEVMFKWWDPVYYWYRNDIEAVSVRAGCTFTGFDDSSLNGESMTVRAGNKDRHVELNDEDEFE--DFDEAIQSISCTC 447
BLAST of EMLSAG00000012613 vs. L. salmonis peptides
Match: EMLSAP00000012613 (pep:novel supercontig:LSalAtl2s:LSalAtl2s94:399499:399993:-1 gene:EMLSAG00000012613 transcript:EMLSAT00000012613 description:"maker-LSalAtl2s94-snap-gene-4.3") HSP 1 Score: 278.485 bits (711), Expect = 4.104e-97 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 Query: 1 MDARSHHKSYHMYKNLDRKSLVDRISSVMCTCPGLDPSGQQRRIDPNSNIKESKCPPMLDSVCAVLYDEEDCYKNDIESFTVREGCTLEAFDDSDFSDDGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136 MDARSHHKSYHMYKNLDRKSLVDRISSVMCTCPGLDPSGQQRRIDPNSNIKESKCPPMLDSVCAVLYDEEDCYKNDIESFTVREGCTLEAFDDSDFSDDGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC Sbjct: 1 MDARSHHKSYHMYKNLDRKSLVDRISSVMCTCPGLDPSGQQRRIDPNSNIKESKCPPMLDSVCAVLYDEEDCYKNDIESFTVREGCTLEAFDDSDFSDDGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136
BLAST of EMLSAG00000012613 vs. L. salmonis peptides
Match: EMLSAP00000004691 (pep:novel supercontig:LSalAtl2s:LSalAtl2s245:667741:668821:1 gene:EMLSAG00000004691 transcript:EMLSAT00000004691 description:"maker-LSalAtl2s245-augustus-gene-5.12") HSP 1 Score: 147.132 bits (370), Expect = 5.570e-44 Identity = 88/170 (51.76%), Postives = 106/170 (62.35%), Query Frame = 0 Query: 1 MDARSHHKSYHMYKNLDRKSLVDRISSVMCTCPGLDPSGQQRR-----IDPNSNIKESKCPPMLDSVCAVLYDEEDC-----------------------------YKNDIESFTVREGCTLEAFDDSDFSDDGISAVAARGDLLVNLDDHKNDKFEDLDNDIESVKCHC 136 MDAR+ K Y+M+KNLDR SLVD ISS+ C C G +QRR IDP SNI+ SKCPPM CAVL+DEE+C YKN++ESF VREGC EA+DDSD+SDDGI A GDLL+NL+ H+NDK+E L+NDIESV+C C Sbjct: 104 MDARNFFKPYNMWKNLDRNSLVDDISSIECECFGDKELNEQRREERRAIDPGSNIESSKCPPMPRHACAVLFDEENCRNDDWDNSIVLADGEDRSFSLFNSMMNFKYKNEVESFMVREGCIFEAYDDSDYSDDGIRVRALNGDLLINLNSHRNDKYESLNNDIESVRCFC 273
BLAST of EMLSAG00000012613 vs. L. salmonis peptides
Match: EMLSAP00000010465 (pep:novel supercontig:LSalAtl2s:LSalAtl2s695:72746:87766:1 gene:EMLSAG00000010465 transcript:EMLSAT00000010465 description:"maker-LSalAtl2s695-snap-gene-1.18") HSP 1 Score: 56.225 bits (134), Expect = 5.352e-11 Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 0 Query: 1 MDARSHHKSYHMYKNLDRKSLVDRISSVMCTCP---------GLDPSGQQRRIDPNSNIKESKCPPMLDSV 62 +D R+ K Y+ +KNLDRKSL D ISSV+C CP G G+ ++IDP SNI SKCP + S+ Sbjct: 99 LDGRNFDKPYNRWKNLDRKSLNDEISSVVCECPDEKTSGSSNGGSSIGRPKKIDPASNIDGSKCPTIPVSI 169 The following BLAST results are available for this feature:
BLAST of EMLSAG00000012613 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000012613 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 20
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BLAST of EMLSAG00000012613 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000012613 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000012613 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000012613 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000012613 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s94:399499..399993- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000012613-695379 ID=EMLSAG00000012613-695379|Name=EMLSAG00000012613|organism=Lepeophtheirus salmonis|type=gene|length=495bp|location=Sequence derived from alignment at LSalAtl2s94:399499..399993- (Lepeophtheirus salmonis)back to top Add to Basket
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