EMLSAG00000012670, EMLSAG00000012670-695436 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012670
Unique NameEMLSAG00000012670-695436
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
O F88 UN16 female
  1. PreAdult2
  2. Adult
 -Missing-
no visible phenotype 		02.12.2013 - 10:45
08.01.2014 - 00:00
P F109 UN16_g1269 female
  1. PreAdult2
  2. Adult
 -Missing-
no visible phenotype 		07.03.2014 - 15:55
22.04.2014 - 00:00
Homology
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BLAST of EMLSAG00000012670 vs. C. finmarchicus
Match: gi|592781538|gb|GAXK01173030.1| (TSA: Calanus finmarchicus comp133107_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.8246 bits (107), Expect = 1.506e-4
Identity = 51/210 (24.29%), Postives = 98/210 (46.67%), Query Frame = 0 
Query:  209 WTLCTKMGNSLVPSFLKATNPSTNKIPSSLMDLLSNIPFQMLQDVPCESPVQNI----YLQKFKEYLKKRNLKEEDNILSFIISYNIFMRKNQEIDSDKPKKTSQQIHN--LKNQKKTIFFNICESFFNYENPDNLISLNTEVLMDELNNSLDLKNSDKEPNYSLLQKAIEDNSVKE--------LETTFQQFMLQMGQKR-TACLLSLL 403
            + L   MGN    SF  A N      P +L +LL  I  +   D+   +  Q I    +  KF++YLK RNL  ++ IL F++            ++        +IH+   ++ +K +F +I ++F + E+ ++++ L+ + L  +L+ +    NS K      ++  +E   V++        +E T+ +F+ Q      TAC++S+L
Sbjct:  422 FNLGADMGNYC--SFTGAGNKKAPSPPHTLEELLYEIGVK--DDISAATVDQVIGVSPWANKFRQYLKSRNLSGDETILRFMVLIQPLKSCANLNNNHAQILGHSKIHHGLTESDRKRLFVDIFDTFLS-EDSEDVLPLSNQALWGDLHAT---SNSIKAGLPVSMESIMEITQVRKDPGIWDEGIEPTYMRFLRQAPPPTLTACIMSIL 1027
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BLAST of EMLSAG00000012670 vs. C. finmarchicus
Match: gi|592841917|gb|GAXK01115627.1| (TSA: Calanus finmarchicus comp4123317_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 6.700e-1
Identity = 27/108 (25.00%), Postives = 49/108 (45.37%), Query Frame = 0 
Query:  261 NIYLQKFKEYLKKRNLKEEDNILSFIISY-NIFMRKNQEIDSDKPKKTSQQIHNLKNQKKTIFFNICESFFN-YENPDNLISLNTEVLMDELNNSLDLKNSDKEPNYS 366
            +++   F  +++ +N    D I SF+I Y NIF+     I S    K  QQ+   +  + +IFF    + F  Y +  N   ++  +   E+ N + +  S + P  S
Sbjct:  281 DLFFNCFSSFIQFQNFFGCDLIFSFLIVYFNIFVHLKNLIGSWSTSKVFQQVFFFRVVQLSIFFIFHTTCFKLYMSNINGFFISLFIFFVEILNFV*INTSIQSPAIS 604
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BLAST of EMLSAG00000012670 vs. L. salmonis peptides
Match: EMLSAP00000012670 (pep:novel supercontig:LSalAtl2s:LSalAtl2s95:37429:41144:1 gene:EMLSAG00000012670 transcript:EMLSAT00000012670 description:"maker-LSalAtl2s95-augustus-gene-0.23")

HSP 1 Score: 825.083 bits (2130), Expect = 0.000e+0
Identity = 403/403 (100.00%), Postives = 403/403 (100.00%), Query Frame = 0 
Query:    1 MEMDEGSVRVLDGRSDKVTCMKRILLSLFLLLLTAILAGILWITLIGPPNSVCLEEKGFNNTRYTNPDGTYRELSYIFIEKEPKRHFYAFKEGKSKCLELGAEIWEVVGEEAEWNLFYNIATKRNIIGPRGSGIWINAIMNQKCPEQPSKNCVEEKAQSGHGXXVKWPSTGKISTYSKLEGRDDSADENCVVTTENGLWSSADCTYGFWTLCTKMGNSLVPSFLKATNPSTNKIPSSLMDLLSNIPFQMLQDVPCESPVQNIYLQKFKEYLKKRNLKEEDNILSFIISYNIFMRKNQEIDSDKPKKTSQQIHNLKNQKKTIFFNICESFFNYENPDNLISLNTEVLMDELNNSLDLKNSDKEPNYSLLQKAIEDNSVKELETTFQQFMLQMGQKRTACLLSLL 403
            MEMDEGSVRVLDGRSDKVTCMKRILLSLFLLLLTAILAGILWITLIGPPNSVCLEEKGFNNTRYTNPDGTYRELSYIFIEKEPKRHFYAFKEGKSKCLELGAEIWEVVGEEAEWNLFYNIATKRNIIGPRGSGIWINAIMNQKCPEQPSKNCVEEKAQSGHGXXVKWPSTGKISTYSKLEGRDDSADENCVVTTENGLWSSADCTYGFWTLCTKMGNSLVPSFLKATNPSTNKIPSSLMDLLSNIPFQMLQDVPCESPVQNIYLQKFKEYLKKRNLKEEDNILSFIISYNIFMRKNQEIDSDKPKKTSQQIHNLKNQKKTIFFNICESFFNYENPDNLISLNTEVLMDELNNSLDLKNSDKEPNYSLLQKAIEDNSVKELETTFQQFMLQMGQKRTACLLSLL
Sbjct:    1 MEMDEGSVRVLDGRSDKVTCMKRILLSLFLLLLTAILAGILWITLIGPPNSVCLEEKGFNNTRYTNPDGTYRELSYIFIEKEPKRHFYAFKEGKSKCLELGAEIWEVVGEEAEWNLFYNIATKRNIIGPRGSGIWINAIMNQKCPEQPSKNCVEEKAQSGHGXXVKWPSTGKISTYSKLEGRDDSADENCVVTTENGLWSSADCTYGFWTLCTKMGNSLVPSFLKATNPSTNKIPSSLMDLLSNIPFQMLQDVPCESPVQNIYLQKFKEYLKKRNLKEEDNILSFIISYNIFMRKNQEIDSDKPKKTSQQIHNLKNQKKTIFFNICESFFNYENPDNLISLNTEVLMDELNNSLDLKNSDKEPNYSLLQKAIEDNSVKELETTFQQFMLQMGQKRTACLLSLL 403
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012670 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012670 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592781538|gb|GAXK01173030.1|1.506e-424.29TSA: Calanus finmarchicus comp133107_c0_seq1 trans... [more]
gi|592841917|gb|GAXK01115627.1|6.700e-125.00TSA: Calanus finmarchicus comp4123317_c0_seq1 tran... [more]
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BLAST of EMLSAG00000012670 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000126700.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s95:37429:... [more]
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BLAST of EMLSAG00000012670 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012670 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012670 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012670 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s95supercontigLSalAtl2s95:37429..41144 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s95-augustus-gene-0.23
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012670 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012670EMLSAT00000012670-708517Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s95:37429..41144+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012670-695436 ID=EMLSAG00000012670-695436|Name=EMLSAG00000012670|organism=Lepeophtheirus salmonis|type=gene|length=3716bp|location=Sequence derived from alignment at LSalAtl2s95:37429..41144+ (Lepeophtheirus salmonis)
GGACTAAAGATGGCGCGCTAAAATACTGAAACCATCTCATCAATGGAAAT
GGACGAAGGAAGTGTCAGAGTCCTTGATGGCCGTTCAGATAAAGTGACTT
GTATGAAAAGAATTTTACTCTCCTTGTTCCTCCTTCTMCTGACAGCCATT
TTGGCTGGAATCCTCTGGATTACACTCATTGGTCCACCAAATTCTGTATG
TCTAGAAGAAAAAGGTTTTAACAATACTCGATATACAAATCCAGATGGAA
CCTATCGGGAACTTAGTTACATTTTCATTGAAAAAGAACCCAAAAGACAT
TTTTATGCCTTTAAAGAGGGAAAAAGTAAATGTTTGGAACTAGGAGGTAA
CGCGATAAATAATAAAGTATTTTATTTGACTTACTTGAAAAAATAACAAT
TATCAACCTTCACTTTGTCCAATCCTTTTAGCCGAAATATGGGAAGTCGT
TGGTGAAGAAGCAGAATGGAACTTGTTCTACAACATAGCCACGAAACGAA
ACATAATTGGACCTAGAGGGTCTGGAATATGGATCAATGCAATAATGAAT
CAAAAATGCCCTGAGCAGCCCTCCAAGAATTGCGTCGAGGAAAAAGCACA
GAGTGGTCATGGCTTKTYCGTGAAATGGCCATCCACGGGAAAAATTTCTA
CCTATTCGAAATTGGAGGGKCGAGATGATTCAGCGGATGAGAACTGCGTT
GTCACAACTGAGAATGGACTATGGAGTTCGGCTGATTGCACTTATGGTTT
CTGGACTTTATGTGTTAAAAGAAATTGCTAATTAATTCATTTAAATATAA
ATTACAACGATTTAATGACATATTTCTTGATAATAATTTCGTTATTTCAT
ATATTTTTATGCACATTGGAAGCAGTTACTTTATTTAAGGATGTCCTATT
GCTGTTAGCTAAAAGATTTTATATGAAAAAAGATAATTTTGGTATCAACA
AAATAAGTACCATTCATTGTTTTGTTTATTAAAAAAAACATCTTCGATTT
GTAACGAKAATATGTTTTGTTGCCATACTAGTCTTTTATATCCTTCATAT
GTTATATTTGCTTGGATTTTTTTTGTATTTTTTTTTTTTTTAATATGTTG
ATCACTTTAAGGTAAATCAAGACTAAACAAAAATCTTTATTTATATTAAT
TAATATTTGTACTTTGTGTGAAATAAATATATGCATATAAAGATATGTCA
ATTTTGAAAGTGACATTAAACTCTGTAGACATCATTTTGTTGCATTTGTT
CAAAACTTGCTTTTGGCTAATTGTGTTGATAAATATCTCAATAACGTTAT
TTTATAAATTTTTACTTTCTAAACATTTAATTTTTTTTTTTACTAAAGAC
CCCTTAAATACGTCCTATTTATTGATTATGCTTATATATTATGCAGCAAA
TTAGAAGTAAGAATGGTTTGAAACTATGTCAAGTTATAGAAGACATTATA
TTATTTTTTTAAATAGAAGGATCGTCTTGAAAGTGTGCAGAGTTGAGCTA
TGATCAAGCAAAGCTTATGTAGTAATAATCAAATATTGTATTATATAGTC
GTATCACCACTAAATGCAATTATTTATGTATTAATGAAAATAGTATAATT
ATTTTGCTATTGTTTAAATTAATAAAAATTTTAAGTTGTAATTTGTTGTC
TCATTGAAGAAAATTGTCCTTAATACCTTTGAATTGAAAGACTTATTCTA
CTATGTATCTCCAAGAAACGTGCCACTCTCATAAAAAAAGCAACAACACA
ATAATGTCATTTGCAAGAACAACAAATCTTGTTTTCTTGCCAAATATAAC
TTTCCTCTTTTTTGTATTCAATACAAGAGAAAGCAGGAATCAGTGTTTAT
GTACTACAACAAACAACAAATAAAAAAGTTATTTCGAGCTGTATTGTAAA
CATTTCTATAATAAAGGACTTTATATGTACTTCCTAAGATTGATACGTGA
ATTACAAATCCCTCCATCACCTTATAAAGTAAGTAACATAATATCTACAC
TGATAAGAACATAGTACATATTGTAACAAGTGATTCAATAGTTTAAAAAA
GTTTAATTATAAAATAAATTTTGATTTGGGTGAGGCCATTATTATTTGTC
ATAAATATAATGTAATTAAAATTACCAAAATATCGCCAAGACTTACTATT
ATTACTTTTCTTCAATATCGTTTGAAATATATCCTACAATATTGTTTTAA
GTTAAACTAGTAGTTATTACACGTAACATGACTCTTACTGACTTATTAAT
ACATGTATTATATAAGGATCCTAATCAAATTAATTTATTCATTATTTATT
GTAGAAAATATAATATATATACAAGTACATCATTTTTTAATATAGGCCTT
AAGAGTTTGGAAGTACTAGTGAAATTGGGAAGATGGCGCGTAAATAAATC
TTTACTGTACCTTGGATAAAATCCTTTTGATAAAATCTTTACCTGCGATT
CTGTATGCTGTGTACGTATTTTACTTAAATTATACATATTTATATGTAAT
GTCACTCAGAAGAAAGAGCAACGTGCTGTGTGCTCTATAAAATATGACGA
ATCCTACTTAAGATACCTAGGATCCTTCTGGCTATTATTATTACAATTAT
TATTTTATATGCAATGAAAGAAGACCAAAATGGGAAACAGCTTAGTTCCT
AGCTTTTTGAAAGCTACAAATCCATCAGTGAGTAAATTTTGTAATGAAAT
GTGAATATTGACTATAATTTATAAATATCTTCATTTTCAGACTAATAAAA
TACCTTCTTCCTTAATGGATCTGTTATCAAATATTCCTTTTCAAATGCTA
CAAGATGTGCCATGTGAAAGTCCTGTTCAAAACATTTATTTACAAAAATT
TAAAGAGTATTTGAAGAAAAGAAATTTAAAGGAAGAAGACAATATCCTTT
CCTTTATAATTTCATATAACATATTTATGAGAAAAAACCAAGAGATAGAC
TCTGATAAACCCAAAAAAACTAGTCAACAAATTCACAATTTAAAAAACCA
AAAGAAAACAATATTTTTTAACATTTGTGAGAGTTTCTTCAACTATGAAA
ATCCAGATAATTTAATATCATTAAATACAGAAGTATTAATGGATGAACTT
AATAATTCTTTAGATTTGAAAAATAGTGACAAAGAGCCCAACTACAGTCT
ACTACAAAAAGCTATCGAAGATAACAGTGTCAAAGAACTTGAAACTACGT
TTCAACAATTCATGCTACAAATGGGACAAAAAAGAACTGCTTGTTTACTT
TCATTACTATAACTTAGATAGTATATTATTTGATCAGAATTGTTCATAGA
TAATATATGCTATATAATTATCAATTGAACACTGTTTATTTTATTAAGCT
TAAATTCAATATTGTATAATTAGTCTCAACCATGGAAATAAAATTTTATT
TAGCTATTTAATGGCCATCAATATAGAGATATAAATAAATAAATTATTAC
TGATAAATACCTACATTTTAAAATTTTGTATACTTAGTATTTCGTCGAAA
TCTAGAGTTAAATTAGGGAGGTTTTTTTTCGTTAAGTCCAAAACACACAT
TCTATAATCAAAATATATATCAATTTATTATTTTTTTGTGAAGGAAATAC
AGGTACGAGAACTTTTTTGGTACCAAAAAAATTAATTTTCAAAATCCCCT
TAATGATATTTTTTTTAAATGATTTCGACAATAAAGACATTTTATTAATT
ATAAATTATTTAAAAT
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