EMLSAT00000000118, EMLSAT00000000118-695965 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000000118
Unique Name	EMLSAT00000000118-695965
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date	Publication
	A F2 (IRP1)	LsIRP1A	female PreAdult2 Adult	-Missing- -Missing-	23.01.2012 - 09:00 24.02.2012 - 09:00	Characterisation of iron regulatory protein 1A... more

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: female reproduction, shorter eggstrings
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date	Publication
	B F2+F3 (IRP1+IRP2)	LsIRP1B, LsIRP1A	female PreAdult2 Adult	-Missing- female reproduction, shorter eggstrings	19.03.2012 - 09:00 18.04.2012 - 09:00	Characterisation of iron regulatory protein 1A... more

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date	Publication
	NAE F2	LsIRP1A	unknown Nauplius I Copepodid	no phenotype no visible phenotype	12.06.2014 - 00:00 20.06.2014 - 00:00	Characterisation of iron regulatory protein 1A... more

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s101	supercontig	LSalAtl2s101:496791..499884 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000000118 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000000118	EMLSAG00000000118-682884	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000000497	EMLSAE00000000497-709425	Lepeophtheirus salmonis	exon
EMLSAE00000000498	EMLSAE00000000498-709426	Lepeophtheirus salmonis	exon
EMLSAE00000000499	EMLSAE00000000499-709427	Lepeophtheirus salmonis	exon
EMLSAE00000000500	EMLSAE00000000500-709428	Lepeophtheirus salmonis	exon
EMLSAE00000000501	EMLSAE00000000501-709429	Lepeophtheirus salmonis	exon
EMLSAE00000000502	EMLSAE00000000502-709430	Lepeophtheirus salmonis	exon
EMLSAE00000000503	EMLSAE00000000503-709431	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto778177	auto778177	Lepeophtheirus salmonis	polypeptide
EMLSAP00000000118	EMLSAP00000000118	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s101:496791..499884-

protein sequence of EMLSAP00000000118

>EMLSAP00000000118 ID=EMLSAP00000000118|Name=EMLSAP00000000118|organism=Lepeophtheirus salmonis|type=polypeptide|length=895bp
MANPFDKILKNFEIGGKTYKYYDVSSLDPSYHKLPYSIRILLESAVRNCD
NFQVYEKDVETILNWEGNRGKNAEIPFRPGRVILQDFTGVPAIVDFAAMR
DAVKKLGGDPSKINPTCPTDLVIDHSIQVDFARESKALMKNEDLEFQRNK
ERFTFLKWGASSFQNMLIIPPGSGIVHQVNLEYLARVCFTDTDLVFPDSV
VGTDSHTTMINGLGVVGWGVGGIEAEAVMLGQPISMVLPEVVGYRISGSP
QPLVNSTDIVLTITKHLRQVGVVGRFVEFYGPGIKHLSIADRATISNMCP
EYGATIGXFPVDLVSIEYLRLTNRESSKVKCIQEYLHLTNLLRDYEDKST
DPTFSQIVVLDLGTVVTSCSGPKRPQDRVAVTDMKNDFLQCLSNKIGFKG
FAIPDNKKNITVPIIAPDNKEYILRHGSVLIAAITSCTNTSNPSVMLGAG
LLAKKAVDKGLTVPPYIKTSLSPGSGVVTYYLKNSGVIPYLDALGFSIVG
YGXMTCIGNSGPLEDYVVXGXNKGDLVCAGVLSGNRNFEGRINPHTRANY
LASPPLVIAYAIAGRVDIDFEVEALGFDANNEPIYLRDIWPTRDEIQIVE
KKYIVPSMFEDVYSKVTTGNERWNSLEAPKGILYPWDIESTYIKSPPFFD
NMSEELPEPKKIKNALALLNLGXSFTXDHISPAGXIARNXPAARYLASKN
ISPREFNSYGSRRGNDAIMARGTFANIRLVNKFLGGKPGPKTIHLISGDI
MDVFDAAMEYKKENQHLIVLAGKDYGCGSSRDWAAKGPFLLGVRAVIAES
YERIHRSNLVGMGIVPLQYSEGESSESLGFSGKEKFSVELPTNLIPQQVL
DIKVECLDGSIKSFKATVRFDTELELTYYRHGGILNYMIRKVISD

mRNA from alignment at LSalAtl2s101:496791..499884-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000000118-695965 ID=EMLSAT00000000118-695965|Name=EMLSAT00000000118|organism=Lepeophtheirus salmonis|type=mRNA|length=3094bp|location=Sequence derived from alignment at LSalAtl2s101:496791..499884- (Lepeophtheirus salmonis)
ATGGCTAATCCATTTGACAAGATATTAAAGAATTTCGAAATTGGGGGAAA
AACCTATAAATACTACGATGTGTCGTCCTTGGATCCCTCCTATCATAAGT
TGCCTTACTCCATACGGATTTTGCTTGAATCTGCCGTTCGAAACTGTGAT
AATTTCCAAGTAAAGCTATTCTGCATTTAGTCAAGGATCACGCATGTTCC
TTTTTATTCCCTTAGGTGTACGAGAAAGACGTGGAAACAATACTGAACTG
GGAAGGGAATCGAGGGAAGAATGCAGAGATTCCATTCCGACCAGGTCGTG
TTATACTCCAAGACTTTACTGGAGTTCCCGCTATCGTGGATTTTGCAGCT
ATGAGAGATGCTGTCAAGAAACTCGGCGGAGATCCCTCCAAGATCAACCC
AACATGTCCCACAGATCTCGTTATTGATCACTCCATCCAAGTGGACTTTG
CTCGTGAGTCCAAGGCTCTCATGAAGAATGAGGATTTAGAGTTTCAACGA
AACAAGGAGAGATTCACATTTCTTAAATGGGGTGCGAGCAGTTTTCAAAA
CATGCTCATCATACCTCCAGGATCTGGGATTGTTCATCAAGTGAATCTTG
AGTATTTGGCCCGCGTTTGCTTTACAGATACGGATCTTGTTTTCCCTGAC
TCTGTCGTAGGAACAGATTCCCATACCACGATGATTAATGGTCTTGGAGT
TGTTGGATGGGGAGTTGGAGGCATAGGTATTCATTAGCGCTTCAATTTAT
AAAAACATCCTAATTTTTGCCCTTTTTTTACAGAGGCTGAAGCTGTAATG
TAAGTTCCTTTATTGTTAACCCTTTTTTACTTTAATAATAATAATAAAAA
ATAAGGAAGTAATATAGGTAAATATTTAAAATGATTTCAAAAATTTTAAA
GGCTTGGACAACCCATTTCCATGGTCTTACCTGAGGTTGTGGGCTACCGA
ATCTCAGGCTCCCCCCAACCCCTGGTCAACTCAACGGATATTGTATTGAC
AATTACAAAACATTTACGACAAGTCGGGGTTGTTGGTAGGTTTGTGGAAT
TTTATGGTCCTGGGATCAAACACCTCTCCATTGCTGATAGAGCAACAATT
TCAAATATGTGTCCCGAGTATGGTGCAACCATCGGCTAMTTTCCAGTGGA
TTTGGTATCCATTGAATACCTCAGGTTTTAACATATTTTTAGTCTTCTCA
ACCATCTCATTGACTTATTATTTTTTTATCTTTCAAGACTTACAAATCGT
GAATCCTCAAAGGTGAAGTGCATTCAAGAGTATCTTCATCTCACGAATCT
TTTAAGGGACTATGAGGATAAGTCCACTGATCCCACATTTTCTCAAATTG
TGGTACTTGACTTGGGAACTGTTGTTACAAGTTGTTCGGGTCCAAAACGG
CCTCAAGATAGAGTTGCCGTCACTGACATGAAAAATGACTTTTTACAGTG
TCTATCTAATAAGATTGGCTTCAAGGGATTCGCCATTCCTGATAACAAGA
AAAATATAACTGTGCCAATCATTGCTCCAGATAACAAGGAGTATATTCTA
AGACATGGCTCCGTTCTTATTGCAGCTATTACTAGCTGCACGAATACTTC
AAATCCAAGGTAAGTTGTGGGTTGTCTATTCTACCGTTTTTAATATCTGA
TGATTTTCTGTTTATTCTCAAGTGTTATGTTAGGTGCTGGATTATTGGCA
AAAAAAGCAGTGGATAAAGGGCTTACTGTTCCTCCTTATATCAAGACTAG
CCTGTCTCCTGGTTCAGGAGTAGTCACCTACTATCTTAAAAATTCAGGTG
TGATCCCTTATCTAGATGCACTTGGATTCTCAATTGTTGGATATGGCTGS
ATGACTTGTATTGGTAATTCTGGTCCTCTTGAAGATTATGTGGTGGRAGG
TGKAAATAAGGGGGACCTTGTTTGTGCTGGAGTCCTTTCTGGAAATCGTA
ATTTTGAGGGTCGTATTAATCCTCATACGCGAGCAAATTATTTAGCCTCT
CCGCCCTTGGTTATTGCGTATGCGATTGCTGGACGAGTGGATATCGATTT
TGAAGTAGAAGCTCTCGGATTTGATGCTAACAATGAACCCATTTATCTGC
GAGATATCTGGCCTACTCGGGATGAGATTCAAATTGTAGAAAAGAAGTAT
ATTGTTCCTTCTATGTTTGAAGATGTTTACTCAAAAGTAACTACTGGAAA
TGAGAGATGGAATTCTCTGGAAGCTCCAAAAGGAATACTCTATCCTTGGG
ATATAGAGTCAACCTATATAAAAAGCCCTCCATTTTTCGACAATATGTCA
GAGGAATTGCCTGAACCTAAAAAAATAAAGAATGCACTAGCTCTTTTGAA
TCTAGGCGMCTCTTTTACCASGGATCATATAAGTCCTGCTGGAAKTATTG
CWAGAAATASCCCCGCCGCAAGATATTTAGCTTCCAAGAACATCAGTCCA
AGAGAATTTAATTCATATGGTTCACGTCGGGGTAATGATGCTATTATGGC
TCGAGGGACATTTGCAAACATACGTCTTGTAAACAAATTCCTTGGAGGAA
AGCCCGGCCCTAAAACCATTCATCTCATTTCGGGGGACATAATGGATGTA
TTTGATGCTGCAATGGAGTATAAAAAGGAAAATCAACACCTCATTGTTCT
GGCTGGAAAAGACTATGGCTGTGGTTCAAGTCGTGATTGGGCAGCGAAAG
GTCCATTTTTACTGGTGAGGAAATTATTTCTATGAGTCCACTTCATTTAT
TGTATATGGTTATAATTAAAATTATTTAGGGTGTAAGGGCTGTGATTGCG
GAATCTTATGAAAGGATTCATCGATCGAACCTTGTAGGAATGGGAATCGT
CCCCCTTCAATACTCTGAGGGCGAGTCTAGTGAGTCACTCGGATTTTCTG
GCAAGGAAAAGTTTAGTGTCGAACTTCCCACTAATTTAATTCCTCAACAA
GTTCTGGATATTAAAGTTGAATGTCTTGACGGATCTATCAAATCGTTCAA
GGCCACAGTGAGATTTGACACTGAGTTGGAATTAACATATTATCGCCATG
GTGGCATTCTTAATTATATGATAAGAAAAGTTATATCTGACTAG

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