EMLSAT00000000454, EMLSAT00000000454-696301 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000000454
Unique NameEMLSAT00000000454-696301
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: reproduction, female reproduction, no eggstrings
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AS F380 EMLSAT00000000454 female
  1. PreAdult2
 -Missing-
reproduction, female reproduction, no eggstrings 		21.08.2018 - 09:08
24.09.2018 - 09:08
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s106supercontigLSalAtl2s106:459063..461105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000000454 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000000454EMLSAG00000000454-683220Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000002004EMLSAE00000002004-710932Lepeophtheirus salmonisexon
EMLSAE00000002005EMLSAE00000002005-710933Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto777868auto777868Lepeophtheirus salmonispolypeptide
EMLSAP00000000454EMLSAP00000000454Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000000454

>EMLSAP00000000454 ID=EMLSAP00000000454|Name=EMLSAP00000000454|organism=Lepeophtheirus salmonis|type=polypeptide|length=658bp
MTLSSGFGTYITGSHPTFCPESPMASLCEQETQQECPKDRDITGCFHGYY
CLPRWIYHNLMKCPLVCPPLCEEHEMFCPGSMVDECPTEDNCVAKIDENN
KCPNYCPITCEKGQHICPGIRKDDGCRGPDTCVPIGTQCPSEIFDEFACP
IIDSPSCVYPETHCHXTFCPATCIPGIETEXPETYDEDGCPLPASCSKFL
AHCPDSSFEPGTGCPVVPSKNCTTTNKQTCHNEPMHKSIIITEFRDEYGY
SEYLTIFLNQTLTIDDPICDMGHFCVDRSDSDEGCPIHCPVYCNNNTQKS
CPGVLDDDGCLGQGMCVSIAESCPISQYDLDGCFVHGAINCDPEYEISCP
GVRDQRGCIGRESCVPKHGDCSCPKEEFDHNGCLLEXSEPICNSTEIQCS
RGKSAKGCDLGFDCSLSIIDGCPNHCSPHCDENKQACPIISPHTGAYANC
STTEGYECVDLYDSKGCTQFCSNHCTKIGLLTCPPIYNGEGCPTGPAVCT
TDLDQCAPSTFNLKGCKKIKQLQNCSYYETGDYEGSYQLCSGGTDSHGXP
RLNTCEPTLTPEGHPFHCPVVCQQNELSCSRGTFXSXSMGEFCXPADAHY
NFMPNMSCATFCPAACDWSIQKACSGGYNKMTGCPHQDICIPKHKYCNTF
PSGSPRSY
back to top

mRNA from alignment at LSalAtl2s106:459063..461105-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000000454-696301 ID=EMLSAT00000000454-696301|Name=EMLSAT00000000454|organism=Lepeophtheirus salmonis|type=mRNA|length=2043bp|location=Sequence derived from alignment at LSalAtl2s106:459063..461105- (Lepeophtheirus salmonis)
ATGACTCTTTCTTCTGGATTTGGCACCTATATTACAGGATCCCATCCGAC
CTTTTGTCCTGAGTCCCCCATGGCCTCTCTCTGTGAACAAGAGACTCAAC
AGGAATGCCCAAAGGACAGAGATATCACAGGATGTTTTCATGGATACTAC
TGCCTTCCCCGATGGATTTATCATAATCTAATGAAATGTCCACTCGTATG
CCCACCTCTCTGTGAGGAACATGAAATGTTTTGTCCCGGATCCATGGTTG
ATGAATGTCCTACAGAAGATAATTGCGTTGCCAAAATTGATGAAAATAAC
AAGTGTCCAAATTATTGTCCAATTACTTGTGAAAAAGGTCAACACATATG
TCCTGGAATCCGAAAAGATGATGGATGCAGAGGTCCAGATACCTGTGTAC
CCATTGGTACACAATGTCCAAGTGAGATTTTTGATGAATTTGCTTGTCCC
ATCATTGATTCACCCAGTTGTGTGTATCCCGAAACTCATTGCCATGNAAC
ATTTTGTCCAGCAACATGCATTCCAGGTATTGAGACAGAATMCCCTGAAA
CCTACGATGAAGATGGATGTCCTCTTCCTGCGTCTTGCAGTAAATTTTTA
GCTCATTGTCCTGACTCTTCWTTTGAACCAGGGACTGGGTGTCCTGTGGT
TCCTTCTAAAAACTGCACAACTACTAATAAACAAACATGTCATAATGAAC
CCATGCATAAGAGTATAATCATAACCGAGTTTCGAGATGAGTATGGCTAT
TCCGAGTACTTGACAATCTTCTTAAACCAAACTCTGACTATAGATGATCC
AATCTGTGATATGGGACATTTTTGTGTGGATCGTTCGGACTCAGACGAAG
GTTGTCCAATTCATTGTCCTGTTTATTGTAACAATAATACACAAAAGAGT
TGTCCCGGTGTCTTGGATGACGATGGATGCTTGGGTCAAGGGATGTGCGT
ATCTATTGCAGAATCTTGTCCAATAAGCCAGTATGATTTAGATGGTTGCT
TCGTTCATGGTGCTATTAATTGTGATCCAGAATATGAAATCTCTTGCCCG
GGAGTACGAGATCAAAGAGGATGTATTGGACGAGAATCTTGTGTGCCCAA
ACATGGAGATTGTAGCTGTCCAAAAGAAGAATTTGATCATAATGGTTGCT
TATTGGAAGMATCAGAACCGATTTGCAATTCCACAGAAATCCAATGTTCA
AGAGGTATGCATGATCATTAAGGATCTTAACGTTTTTATCTTTTTATATA
TATTTGTTCTTTATTTTCAGGTAAATCTGCTAAGGGTTGTGATCTGGGCT
TTGATTGCTCCCTTTCCATCATTGATGGCTGTCCAAATCACTGTTCACCC
CATTGCGATGAAAATAAACAGGCTTGCCCCATTATTTCACCCCATACTGG
AGCTTATGCCAACTGCTCTACAACAGAGGGCTACGAATGCGTGGACTTGT
ATGACTCCAAAGGCTGTACACAATTTTGTTCAAATCACTGCACAAAAATA
GGTCTTCTCACCTGCCCACCGATTTACAATGGGGAGGGTTGTCCAACTGG
ACCTGCAGTATGTACCACGGACCTGGATCAATGTGCTCCATCTACATTCA
ATTTAAAAGGTTGTAAAAAGATCAAACAACTCCAAAATTGCTCATACTAC
GAAACCGGAGACTACGAAGGCTCATATCAACTCTGTTCTGGAGGAACAGA
CTCTCATGGCTGMCCTCGTTTGAATACTTGTGAACCAACACTAACACCRG
AGGGACACCCCTTTCACTGTCCAGTGGTTTGTCAGCAAAATGAGTTGAGT
TGTTCCCGAGGGACTTTCAKCTCCWTTTCCATGGGCGAATTTTGCARCCC
TGCCGATGCACACTATAATTTTATGCCCAATATGAGTTGTGCAACTTTTT
GTCCAGCTGCTTGTGATTGGAGCATTCAAAAGGCCTGTTCTGGAGGATAT
AATAAAATGACGGGCTGTCCTCATCAGGATATATGTATACCCAAGCACAA
ATACTGCAATACATTTCCAAGTGGCTCACCTCGTTCTTATTAA
back to top
Add to Basket