EMLSAT00000005702, EMLSAT00000005702-701549 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000005702
Unique Name	EMLSAT00000005702-701549
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date
	AT F394 + F149		female PreAdult2	No Visible Phenotype -Missing-	01.10.2018 - 12:00 30.10.2018 - 12:00

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s309	supercontig	LSalAtl2s309:326623..333557 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000005702 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000005702	EMLSAG00000005702-688468	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000024932	EMLSAE00000024932-733860	Lepeophtheirus salmonis	exon
EMLSAE00000024933	EMLSAE00000024933-733861	Lepeophtheirus salmonis	exon
EMLSAE00000024934	EMLSAE00000024934-733862	Lepeophtheirus salmonis	exon
EMLSAE00000024935	EMLSAE00000024935-733863	Lepeophtheirus salmonis	exon
EMLSAE00000024936	EMLSAE00000024936-733864	Lepeophtheirus salmonis	exon
EMLSAE00000024937	EMLSAE00000024937-733865	Lepeophtheirus salmonis	exon
EMLSAE00000024938	EMLSAE00000024938-733866	Lepeophtheirus salmonis	exon
EMLSAE00000024939	EMLSAE00000024939-733867	Lepeophtheirus salmonis	exon
EMLSAE00000024940	EMLSAE00000024940-733868	Lepeophtheirus salmonis	exon
EMLSAE00000024941	EMLSAE00000024941-733869	Lepeophtheirus salmonis	exon
EMLSAE00000024942	EMLSAE00000024942-733870	Lepeophtheirus salmonis	exon
EMLSAE00000024943	EMLSAE00000024943-733871	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto776421	auto776421	Lepeophtheirus salmonis	polypeptide
EMLSAP00000005702	EMLSAP00000005702	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s309:326623..333557-

protein sequence of EMLSAP00000005702

>EMLSAP00000005702 ID=EMLSAP00000005702|Name=EMLSAP00000005702|organism=Lepeophtheirus salmonis|type=polypeptide|length=1626bp
SAHSSRDSSPNYDKTTSPIHEYILPHHCKKLSCSFHSSYNYTLVRLLFTI
RMEPRNYQLELFDIAKDQNSIVYLGTGSGKTFIAIMMIKEFYGGXKNEEK
KIVMVVPSLPLAHQQSRVIDEQCKFARVGKIVGEDGVDLWDSSKWNEVIN
SLDIIVXIHQVLLDSLSHSFLTLSNISLLIFDECHHTFKDNPYNMIMKEH
YLTLKSTHPHKVPHILGLSASVVISQCDDELKFLREKKILEANLDSKIIT
TMDLDNYLRFVTQPHECLKQYHAPSLGTDISNIVDDGLIKIENEFENHII
FLKQEMRDSKDKISLLTTRAKSKKKLFNRTLNDISMLYNTLGMFAARIYV
YTMLQDTFPEIKLRCDEKYQFKLLQIVYDTFKSVEGIFQRKWNDFVGSDL
QKMYYFMSSKLKKLLEIFTEFVTDSQFSMQSFTAVVFVKRRESCKIIYEV
LKEILRLDSRFSFISPAYIIGQSMVELNPGSNEMKKMQDTITNFRSGRYN
LIVSTSVLEEGMDIKKCNLVIRFDEIDTYRSYVQSKGRARAKPSMYVIMC
STTDLPTMDMKLSSFRKIEQMSITECHTLPFELQKLNDFHEENEDNEEEE
DPYFVNPNDKTNSAMISPATSISLLHQYINSITTDKFTTLAPYWEYSRTT
SKPHNILLSVLEEPKYVCQVTLPHKTPLNFPVKGALRASRKKAKRSAALQ
ACTMLHQLGELDDKLIPKKKRIHEELEELDDGLDDDEDHAKPGTKRFRRY
YAQKKPLLSSSPILCASKVFIYTIDMHLVSITKHNPKRYSLYYPQETERK
LGLCLISPLSDIVMSNKITLYSRSGIVEVNILLANSHISGSTLVEKCGGL
NTLQKYTKLIYSDVLQVVTPWMEELTEKELLECRDPLIVPLLNGEIDKDF
ILKTISGQPYNDGDMTERVVSLLHKPDPQRYFVEEVIPELTPLSLINENT
TFVEYYSQKYGMKITDKSQPLIRLSNADAERFAYSEVVIEEKDNKLTKLG
NLDFYRTRWLAIPELVLAHSVPSSFWKDLKLLPYILERINQIQNSMTLLK
ELCSFEKGEPCSNKDLSFDFLTDLNSDAQTLSFNHFELFKSLTLTNAGEE
FDLERNEILGDAFLKIMTSIYLYFAINSKDEGYLSLYRSRIVGNRNLLRV
GEMIGDLQLGGVLNAVKLQPKLNWQVPFYNNLKSLEEEIVKMNRDFRKTV
LTSNEKFKSHNFLDGMNNSDLSRLKEILCCDNPNTSIFYNDIVNKLSEAR
GNTNYSESKAQLSSLRVFVPVNDKSIADALESIIGVYLLHYGCKATLRMM
ATKMGISLFPNVKVENNICGHSKLKVSQSLNWFVPPTNAIQDFGKKVVNH
EILNRLLLKLQYKTIEKIIGYEFKEKTFLLQAFTHSSFSSNKITDSYERL
EFLGDAILDYLVTSYIFIEFPTYGPGKVTDARSAVVNNVTLAILTIKSEL
YCHLLHSEPLILSRIDSMIANMEFDESNMNEFDFFKLKMSLLSETECPIL
EEVDVPKVLGDICESVLGAVFLDSGFDLKIVWNVFKRLCPNLDQIVALKP
KNYVTKLYELFPERISFGPSKKVGNKIEKTVSLRMKDDKVYKARGIGPKG
KIAKISACKCLIRGLVKIKELPSDVI

mRNA from alignment at LSalAtl2s309:326623..333557-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000005702-701549 ID=EMLSAT00000005702-701549|Name=EMLSAT00000005702|organism=Lepeophtheirus salmonis|type=mRNA|length=6935bp|location=Sequence derived from alignment at LSalAtl2s309:326623..333557- (Lepeophtheirus salmonis)
TCGGCCCACTCTTCTCGGGACTCGAGTCCGAATTACGACAAAACGACTTC
TCCAATACACGAATATATACTACCACATGTAATAAGCAAATATTATTTAT
TAATTTCATTGATGTAGATCTTTACTTTGAGGGATTGAATATCAATTATC
ATTTAATCATTATCTAACAATTGCATTTCTTCCTTTCCTTCAAAATGGAG
CATTTACTCAATTTCTATTTTCTATCTAATAATATAATTAAAGCTTCACA
CAACTGAGTGAGTCATAACAAATATCAAAATGCATTCATTTACKAAGTTA
TTGATTCGTCCACGTAGTAGACTCTTTGATAAAATAACTGATATCTGATG
CAATCTTTATTAAACTCAATCTTCATCGCTCTACAATATATGTTTTTATT
AGTATTACTATATTAGATGTAAGTAGATATCTTCCTCCTACTTCACTAAA
TCCACCTCTACTTACTAACTAAAAATGACTATTAATCAAAACTATCACCA
TGTCTGACGTCAATATATTCTCAGTCCATTATTTAGCATTGTAAAAAATT
ATCTTGCTCCTTCCACTCTTCATATAATTATACACTCGTTCGATTACTCT
TTACCATCAGAATGGAACCACGAAACTATCAGGTAATTGCATCAAAAACT
CATTTTATTATTTTCCCTCAATTCAGTATTTCTTATTTTCCTGTTCCTTT
GTACATAGTTGGAGCTATTTGATATAGCGAAAGATCAAAATTCAATTGTT
TATCTAGGAACTGGAAGTGGGAAAACTTTTATAGCTATCATGATGATTAA
AGAGTTTTATGGAGGGKCGAAAAACGAAGAGAAAAAGATTGTCATGGTTG
TGCCAAGTCTTCCTTTAGCTCATCAACAATCCAGGTATAAGGTCGTCTCT
TGTTTACAAAATTTGGATTGTAAAAAATGTTGACCTTTTATCATTACAGA
GTAATAGATGAACAATGCAAATTTGCTCGTGTTGGAAAAATAGTAGGAGA
AGATGGGGTAGATTTATGGGATTCTAGCAAGTGGAACGAAGTGATTAATT
CATTAGACATTATAGTAATSATCCATCAAGTCCTACTTGATTCATTGTCT
CACAGTTTTCTCACATTATCTAATATATCACTTTTAATTTTTGATGAATG
CCACCACACATTTAAGGACAATCCTTATAATATGGTTTGTATAACCTTTT
TTGCTTATATTATCTATTTTCCACTAATTATCAACATCATTTATTCATTT
TATCAAATCAATTAGATAATGAAAGAGCATTATCTTACTCTTAAATCAAC
ACATCCTCATAAAGTTCCACATATATTGGGCCTCTCTGCATCTGTCGTTA
TTAGTCAATGTGACGATGAGCTCAAATTTTTAAGAGAAAAGAAGATTCTT
GAGGCCAACCTTGACTCCAAGATTATAACAACCATGGATTTGGATAATTA
CCTTCGGTGAGTGTCTATTCTTTAAATATGTACAATTTTGATCATTATAT
TTTATTTATAAAATTTATTTAGATTCGTTACTCAACCACACGAGTGTTTA
AAGCAGTATCATGCACCCTCACTGGGTACGGATATAAGCAATATTGTTGA
TGATGGGCTGATTAAAATAGAAAATGAGTTTGAAAATCATATTATTTTCC
TAAAGCAGGAAATGAGGGACTCCAAAGATAAAATTTCTTTATTGACAACA
AGAGCAAAGTCTAAAAAAAAACTTTTCAATCGAACCCTTAATGATATCTC
CATGCTTTATAACACATTGGGTAATTAATTCATGAGTATTATCATGATGA
TGATCAAGTAACTCTTTTTTAGGAATGTTTGCGGCAAGGATATATGTTTA
CACAATGCTACAAGACACTTTTCCCGAGATCAAACTCAGATGTGATGAAA
AATATCAATTCAAACTTTTGCAAATTGTTTATGACACATTTAAATCTGTT
GAGTAATGCCTTTAAAATATTATGAAACTATTGATAAACACAAATTATTT
ATAATTTATATCATATTTCTTTATTAAGAGGGATATTCCAAAGGAAATGG
AATGACTTCGTTGGAAGCGACCTTCAGAAAATGTATTACTTCATGTCATC
AAAATTAAAGAAATTACTCGAAATTTTTACTGAGTTCGTTACAGACTCGC
AATTTTCAATGCAATCTTTTACCGCAGTGGTTTTTGTAAAGAGACGAGAG
AGTTGTAAAATTATATATGAAGTTCTTAAAGAAATATTACGATTAGACTC
AAGATTCTCATTTATATCACCTGCTTATATCATTGGTCAATCCATGGTAG
AATTAAATCCTGGAAGTAACGAAATGAAAAAAATGCAAGATACCATCACC
AATTTTCGGAGTGGCCGATATAATCTAATAGTTTCAACCTCAGTTCTTGA
GGAAGGAATGGATATCAAAAAATGTAATCTCGTTATTCGTTTTGATGAAA
TTGATACTTATCGATCCTATGTTCAAGTAAGATTGTATAATACGCATATA
TTCTAAACTAAGGCTTCTCAAACATTGGGGTTATTTAGCTTGGCTGGTTC
ATAGGCAGAGTTTGAAATACTGAGAGGGGGGTTTCAAAAATAAAATAAAA
TTGCATACTATGTATATAATATAAACGTCTATCATTATATATTAAATATT
GATGATCTGCAAACTCCGCCTTTAGAGTGGATCAATTCCAGGGAGGGGGA
TTTTAGCAAGTATTATATATATATATATAAATATATAATAAGTTTTCTTT
GCTGGGAGATGTTCAAATGCTACCAGAAGTGGAGGGGGATGTGCACCTCC
AAAAGTTTGAGAAGCACGATTCTGTAATTAATCAATTAAATATTATTTAT
GTATATTCTTTCTTTATTTTTTTAGTCAAAGGGCCGAGCCAGAGCAAAGC
CCTCAATGTACGTAATCATGTGTTCAACCACTGATTTACCTACAATGGAC
ATGAAATTGAGTTCTTTTAGAAAAATTGAACAGATGTCCATTACTGAATG
TCATACCCTGCCTTTTGAATTACAAAAATTAAATGATTTCCATGAAGAAA
ATGAGGACAATGAGGAGGAAGAGGACCCTTATTTTGTAAATCCAAATGAT
AAGACAAATTCTGCTATGATTTCYCCTGCCACATCCATTAGTTTACTCCA
TCAATATATTAATTCAATTACTACAGACAAATTTACGACTCTTGCTCCCT
ATTGGGAATATAGTCGCACCACATCAAAACCACATAATATCCTTTTATCA
GTACTTGGTATGTTTTTTATACTTATATATATAATCATAATCATGGGTTG
TGTTCTCCAATTTTAGCAACTGCAATTTTATTATTATTTTTATCATACAT
CCATTGTGTCTTCTTAACAACAAACATATTTATTGTACAGTATTTCTTTT
AGAGATAGATTGACTTTCAGTCGTGCCTGGCATCTGAAAATTTTACGTCT
ATTGGTATCATTCTACAAATATTTAGTTACGTTCTTAATACAATATGATA
TTAATACAGTGGACTAGTTAATTTCCACCCTTTAGTGTGATTTTAAAAAC
ACACGATTTTTAGTTCGAAAAAAGTATTTTTCGGGGTAGGAGAGATTTGT
TTTGCTTTTGTCCAAGAAAATATATCCATGAAGACATACCTAATTAGAAG
CATTAGAAAATACAACCTGAAATAAAATGACGATACTCCTCCCTTCTTTA
AGAAGTCTACACCCCATTACACTGCTTTAATTCAAGCATTGTGTATTTAA
TTGCCAAAACTTAGAACTTAACCCAGGATATATGTATTAAAAATATGTAG
AAATTTTATGAATCAATGTATATTTTAGAGGAACCAAAGTATGTATGCCA
AGTAACTCTTCCTCATAAGACACCACTAAATTTTCCTGTAAAGGGTGCTC
TACGAGCATCGCGAAAAAAGGCAAAAAGAAGTGCTGCTCTTCAGGCATGT
ACCATGCTGCATCAATTGGGAGAATTAGATGATAAATTGATTCCAAAGAA
AAAAAGAATACACGAAGAGCTTGAGGAGCTCGATGATGGCTTAGACGATG
ATGAAGTAAGTAATCAATCAATTAATTGAGTTCATACGAGCTATAAATAT
GTATTTAATGGATTCTAGGATCATGCAAAACCGGGTACTAAACGCTTCCG
ACGTTATTATGCTCAAAAAAAGCCTTTATTAAGTAGCTCTCCTATTCTGT
GTGCTTCCAAAGTATTCATATATACCATAGATATGCATCTTGTAAGCATA
ACTAAGCACAATCCGAAGAGGTATTCTCTTTATTATCCACAAGAAACTGA
GCGTAAGCTAGGATTATGTCTTATTTCACCATTGTCCGATATCGTTATGT
CCAACAAAATTACTCTTTACTCCAGATCAGGGATTGTTGAAGTGAACATA
CTATTAGCGAATTCCCATATATCCGGATCTACACTTGTAGAAAAATGTGG
AGGTCTAAATACATTACAGAAATATACGAAACTAATATATAGTGATGTTC
TTCAAGTTGTCACTCCATGGATGGAAGAGCTAACCGAAAAAGAGTTGCTG
GAATGTAGGGATCCATTAATTGTGCCTCTTTTGAATGGAGAAATAGACAA
AGATTTTATTCTTAAAACCATTTCTGGTCAACCCTACAATGACGGTGATA
TGACTGAAAGAGTAGTTAGTCTCTTACACAAACCTGATCCTCAAAGATAT
TTTGTTGAAGAAGTAATTCCTGAACTTACGCCTTTGTCATTAATAAATGA
AAACACAACTTTTGTAGAGTATTACTCCCAAAAATATGGCATGAAAATAA
CTGATAAGAGTCAACCATTAATACGACTTAGTAATGCAGATGCTGAACGA
TTTGCGTATTCGGAAGTGGTAATCGAGGAAAAGGATAACAAATTGACAAA
GTTAGGTAATTTGGATTTCTATCGTACAAGATGGCTTGCAATTCCTGAAC
TTGTCTTGGCACACTCTGTTCCTTCTTCCTTCTGGAAAGACTTAAAACTG
CTTCCGTATATTTTGGAGCGTATTAATCAAATTCAAAATTCTATGACACT
TTTGAAAGAACTTTGCTCCTTTGAAAAGGGGGAACCTTGTTCAAATAAGG
ATTTATCCTTTGATTTTTTAACAGATCTGAATTCTGATGCTCAAACTTTA
AGCTTTAATCATTTTGAGCTATTTAAGTCCTTGACATTAACAAATGCAGG
TGAAGAATTTGATTTGGAGAGGAATGAGATTTTAGGTGATGCATTTTTGA
AGATCATGACCAGTATTTACTTGTACTTTGCGATTAACTCTAAGGATGAA
GGTTATTTATCATTGTATAGATCCAGGATTGTGGGGAATAGAAATTTACT
CCGAGTTGGTGAAATGATCGGTGACCTCCAATTAGGTGGTGTACTAAACG
CCGTGAAATTACAACCAAAGCTTAACTGGCAAGTTCCCTTTTATAATAAC
CTTAAATCCCTTGAAGAAGAAATTGTTAAAATGAACCGAGATTTTCGTAA
AACTGTTCTTACTTCTAATGAAAAATTCAAGTCTCATAATTTCTTAGATG
GAATGAATAATTCAGACTTAAGTAGACTGAAGGAAATATTATGCTGTGAT
AACCCAAATACATCAATATTCTACAATGATATAGTCAATAAGTTGTCAGA
AGCACGAGGAAACACGAATTATAGTGAATCCAAAGCTCAACTAAGTAGCT
TAAGAGTCTTTGTTCCTGTCAATGACAAATCTATTGCTGATGCCCTTGAA
TCCATCATCGGTGTTTATCTCCTTCATTATGGATGTAAGGCCACTCTTCG
TATGATGGCGACTAAAATGGGTATAAGTTTGTTTCCTAATGTAAAGGTAG
AAAACAATATTTGTGGGCATTCGAAACTGAAAGTATCTCAATCCTTGAAC
TGGTTTGTTCCTCCTACTAATGCTATTCAAGATTTTGGCAAGAAAGTAGT
CAACCATGAAATATTGAATCGATTACTGTTAAAGCTACAGTACAAAACTA
TCGAAAAAATTATAGGATATGAATTCAAAGAAAAAACGTTCTTGTTACAA
GCCTTCACACATTCCTCGTTTTCTTCCAATAAAATAACTGATTCGTATGA
GAGGTTGGAATTTCTAGGAGATGCAATTTTAGATTATCTCGTCACTTCTT
ACATTTTTATTGAATTTCCTACCTACGGTCCCGGAAAGGTAATTTATAAT
TTTACATCTTATTATTACTGTATGACCTAGTGAAATGACTGCCTATGTTG
AGAATGAACCTATTATGTTTGGACATAGTTATTATAATTAATTAATGATT
AGTCATTAATAAAATCAGCATTTATTTTATTTTAGGTCACTGATGCCCGG
TCGGCAGTTGTCAACAATGTAACATTGGCTATATTAACTATTAAATCAGA
ACTCTATTGCCATTTACTTCATTCTGAACCATTAATTCTCTCCAGAATCG
ACTCTATGATAGCCAATATGGAATTTGACGAATCAAATATGAATGAATTT
GATTTTTTCAAGCTTAAAATGTCCCTACTTAGTGAAACTGAATGTCCCAT
TTTAGAAGAAGTAGATGTGCCTAAAGTTCTGGGTGATATTTGTGAGTCTG
TGCTTGGAGCTGTGTTTTTAGATTCTGGATTTGACTTAAAAATTGTTTGG
AATGTCTTTAAGAGACTCTGTCCCAATTTGGATCAAATCGTAGCCCTAAA
ACCAAAAAATTATGTGACGAAGCTCTATGAACTTTTTCCTGAAAGAATTT
CCTTCGGTCCATCCAAAAAAGTTGGTAATAAAATTGAGAAAACTGTTTCA
CTTCGAATGAAGGATGATAAAGTCTATAAGGCCCGTGGTATAGGTCCTAA
AGGAAAGATAGCAAAAATTTCAGCATGCAAGTGTCTTATCAGAGGACTAG
TAAAGATTAAAGAACTCCCTTCTGATGTCATATGA

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