EMLSAT00000011448, EMLSAT00000011448-707295 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000011448
Unique NameEMLSAT00000011448-707295
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
X F210 female
  1. PreAdult2
 Eggstrings curly and strange. Less copepodids were seen in RNAi group
-Missing- 		17.03.2015 - 09:00
22.04.2015 - 00:00
AG-F286 female
  1. PreAdult2
 Slightly curly eggstrings. Reduction of copepodids were noted
-Missing- 		16.08.2016 - 09:00
23.09.2013 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s790supercontigLSalAtl2s790:138884..139678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000011448 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000011448EMLSAG00000011448-694214Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000051199EMLSAE00000051199-760127Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto773090auto773090Lepeophtheirus salmonispolypeptide
EMLSAP00000011448EMLSAP00000011448Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000011448

>EMLSAP00000011448 ID=EMLSAP00000011448|Name=EMLSAP00000011448|organism=Lepeophtheirus salmonis|type=polypeptide|length=264bp
MLISFGRLFIVFNCILIQERIISASTTCNSDNEFKCHNGICIPKYHVCDG
ISHCRDSSDENFCLQEKRSRSDNEGVVSIIASFRDSFRNFVRDIMKEVGT
LLRRKKSDGGAETVECKSNDAFFCSVDNICISLSARCDTKDDCSDGEDEN
PNICDFLGGSSLRRSTNKKSIQENGEKLVPLPDIVTLGKSRRTMSVIPRL
SSDNSKSSSFSSSHETRTVKVICNSRQFACDNTCIPLSWVCDDLEDCIDK
TDENQEKCKSKKEK
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mRNA from alignment at LSalAtl2s790:138884..139678+

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000011448-707295 ID=EMLSAT00000011448-707295|Name=EMLSAT00000011448|organism=Lepeophtheirus salmonis|type=mRNA|length=795bp|location=Sequence derived from alignment at LSalAtl2s790:138884..139678+ (Lepeophtheirus salmonis)
ATGTTAATTTCATTTGGAAGACTATTCATTGTATTCAATTGTATACTAAT
TCAAGAGAGAATCATCTCTGCCTCAACGACATGTAATTCTGACAATGAAT
TCAAATGTCATAATGGGATCTGCATACCAAAATATCATGTATGCGACGGG
ATTTCTCATTGTCGAGATTCATCTGATGAAAATTTTTGTCTCCAAGAAAA
AAGATCAAGATCAGATAATGAGGGTGTTGTCAGTATAATTGCTTCGTTTC
GAGATTCATTCAGGAATTTTGTAAGGGACATAATGAAAGAAGTCGGAACC
CTTCTAAGACGAAAGAAATCTGATGGTGGTGCTGAGACAGTTGAATGCAA
GAGTAATGATGCCTTCTTTTGTTCAGTTGATAACATTTGTATATCTCTTT
CTGCAAGATGTGATACAAAAGATGATTGCTCGGATGGAGAAGACGAAAAT
CCAAATATTTGTGACTTCTTAGGCGGCTCATCCCTAAGAAGAAGTACAAA
CAAAAAATCTATTCAAGAAAATGGTGAAAAGTTGGTTCCTCTTCCAGATA
TTGTAACTCTTGGGAAAAGTAGACGAACTATGTCCGTTATACCCCGTTTA
AGTAGTGATAATTCAAAATCCTCATCCTTCTCATCATCGCATGAGACAAG
GACTGTTAAAGTTATCTGCAACTCAAGACAATTTGCATGTGACAATACTT
GTATTCCCCTTTCATGGGTTTGTGATGATCTGGAGGATTGCATAGATAAA
ACAGATGAAAATCAAGAGAAATGCAAGTCCAAAAAGGAAAAATAG
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