thyroid hormone receptor alpha a, snap_masked-scaffold235_size242898-processed-gene-1.1 (gene) Tigriopus kingsejongensis

Overview
Namethyroid hormone receptor alpha a
Unique Namesnap_masked-scaffold235_size242898-processed-gene-1.1
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5")

HSP 1 Score: 64.6994 bits (156), Expect = 3.148e-11
Identity = 36/104 (34.62%), Postives = 53/104 (50.96%), Query Frame = 0 
Query:    4 KEPKRSR--------VCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFG-----GKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQ 93
            +EPK+ +        VC ICG  +   H +YG  +CFSCRAFF R + +    +F C  G     G+C IT+  R  C+ CR+  C+  GM    V    +++Q
Sbjct:  121 EEPKKRKRRPEPMTDVCRICGDIAPP-HNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEERLQ 223
[Close]
BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000009969 (supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-1 gene:EMLSAG00000009969 transcript:EMLSAT00000009969 description:"maker-LSalAtl2s651-augustus-gene-2.5")

HSP 1 Score: 62.003 bits (149), Expect = 2.135e-10
Identity = 29/85 (34.12%), Postives = 46/85 (54.12%), Query Frame = 0 
Query:    2 SGKEPKRSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLV 85
            SG       +C +CG  S   H  YG  +C  C++FF+R + R+    F C+    C + + +R +C+ CRF KC+  GMK++ V
Sbjct:   65 SGTNSSTEILCVVCGDKSSGKH--YGQFTCEGCKSFFKRCVRRSLT--FQCRSKKSCPVDQHHRNQCQHCRFKKCLNMGMKKEAV 145
[Close]
BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000001919 (supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1 gene:EMLSAG00000001919 transcript:EMLSAT00000001919 description:"augustus_masked-LSalAtl2s132-processed-gene-6.5")

HSP 1 Score: 61.6178 bits (148), Expect = 2.787e-10
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 0 
Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQK 91
            CSICG  +   H  YGV SC  C+ FF+R + +     + C+    C I ++ R +C+ CR+ KC+  GMKR+ V ++  +
Sbjct:   91 CSICGDRASGKH--YGVYSCEGCKGFFKRTVRKELT--YACRENRDCVIDKRQRNRCQYCRYMKCLDTGMKREAVQEERHR 167
[Close]
BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000007741 (supercontig:LSalAtl2s:LSalAtl2s450:172104:174744:-1 gene:EMLSAG00000007741 transcript:EMLSAT00000007741 description:"maker-LSalAtl2s450-snap-gene-2.9")

HSP 1 Score: 61.2326 bits (147), Expect = 5.551e-10
Identity = 31/82 (37.80%), Postives = 43/82 (52.44%), Query Frame = 0 
Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCK----FGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDD 88
            C +CG  S   H  YG+ SC  C  FF+R++ R R   + CK    F G+C I + +R +CR CR  KC    M +D V  +
Sbjct:  108 CKVCGDRSSGKH--YGIYSCDGCSGFFKRSIHRQR--IYTCKAQGEFKGRCPIDKTHRNQCRACRLKKCFDCSMNKDAVQHE 185
[Close]
BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6")

HSP 1 Score: 58.9214 bits (141), Expect = 2.148e-9
Identity = 30/85 (35.29%), Postives = 44/85 (51.76%), Query Frame = 0 
Query:   11 VCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNRK-CRKCRFDKCIGQGMKRDLVMDDTQKVQR 94
            +C +CG     YH  YG+ +C SC+ FF+R ++  +   + C     C I +  RK C  CRF KC+  GMK + V  D  +  R
Sbjct:  185 LCPVCGDKVSGYH--YGLLTCESCKGFFKRTVQNKK--VYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGR 265
[Close]
BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000012486 (supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1 gene:EMLSAG00000012486 transcript:EMLSAT00000012486 description:"maker-LSalAtl2s91-snap-gene-4.8")

HSP 1 Score: 58.5362 bits (140), Expect = 4.140e-9
Identity = 24/72 (33.33%), Postives = 40/72 (55.56%), Query Frame = 0 
Query:   11 VCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMK 81
             C +CG  +   H  YG  SC  C+ FF+R++ +     + C+    CE+T+ +R +C+ CR  KC+  GM+
Sbjct:  219 ACVVCGDRASGRH--YGAISCEGCKGFFKRSIRKQLG--YQCRGNKDCEVTKHHRNRCQYCRLQKCLAMGMR 286
[Close]
BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000007894 (supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1 gene:EMLSAG00000007894 transcript:EMLSAT00000007894 description:"maker-LSalAtl2s466-augustus-gene-2.7")

HSP 1 Score: 56.6102 bits (135), Expect = 1.039e-8
Identity = 26/78 (33.33%), Postives = 41/78 (52.56%), Query Frame = 0 
Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDD 88
            C +C  +S   H  YG+ +C  C  FF+R++ R R      K  G C + + +R +CR CR  +C+  GM +D V  +
Sbjct:   34 CKVCTDHSSGKH--YGIFACDGCAGFFKRSIRRNRLYVCKAKSEGSCLVDKTHRNQCRACRLKRCVDVGMNKDAVQHE 109
[Close]
BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000006454 (supercontig:LSalAtl2s:LSalAtl2s3535:4892:6220:-1 gene:EMLSAG00000006454 transcript:EMLSAT00000006454 description:"maker-LSalAtl2s3535-snap-gene-0.8")

HSP 1 Score: 55.4546 bits (132), Expect = 1.340e-8
Identity = 30/95 (31.58%), Postives = 46/95 (48.42%), Query Frame = 0 
Query:   11 VCSICGANSETYHLNYGVSSCFSCRAFFRRALERTR--NPKFNC---------KFGGKCEITEKNRKCRKCRFDKCIGQGMKRDLVMDDTQKVQR 94
            +C +C      +H +YG  +C  CRAFFRR + R R  NP   C              C+I+     C+ CRF  C+ +GM   LV+ D + +++
Sbjct:   27 LCRVCRVVEYQFH-HYGAYACNRCRAFFRRMVRRQRKGNPPTPCITTKGVPPITDAPICDISLFRGACQACRFLACLNKGMDPSLVLTDEKSLKK 120
[Close]
BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Match: EMLSAG00000005620 (supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1 gene:EMLSAG00000005620 transcript:EMLSAT00000005620 description:"maker-LSalAtl2s301-augustus-gene-5.4")

HSP 1 Score: 48.9062 bits (115), Expect = 7.144e-7
Identity = 27/81 (33.33%), Postives = 44/81 (54.32%), Query Frame = 0 
Query:    4 KEPKRSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTR-NPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKR 82
            ++P R+++C +C   +  YH  +G  +C  C++FF R   ++  N    CK    C I +KNR  C+ CR  KC+  GM +
Sbjct:   30 EDPMRNQICRVCDEPAAGYH--FGAFTCEGCKSFFGRTCGKSNLNSISECKNNYSCVIDKKNRTSCKACRLRKCLRVGMSK 108
[Close]
BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|13431919|sp|Q9W6N4.1|THA_HIPHI (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 96.2857 bits (238), Expect = 4.481e-20
Identity = 69/230 (30.00%), Postives = 112/230 (48.70%), Query Frame = 0 
Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + R+LI +N      + M V+  +   +  + + E +         TN +  SW  K  + ++++   G             ++P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAK-RRLIEENREKRKREEM-VRTLQVRPEPDTAEWELIRMATDAHRHTNAQGSSWKQK-RKFLSDDIGQG------------PMVPTSDGDK-VDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 270
[Close]
BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|13431920|sp|Q9W785.1|THA_SALSA (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.529e-20
Identity = 71/230 (30.87%), Postives = 111/230 (48.26%), Query Frame = 0 
Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI   M  DLV+DD+++V + R+LI +N     +K  +VK  +A  +  S + E + +  +    TN +   W  K  + + E+               S   P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFRKCIAVCMAMDLVLDDSKRVAK-RRLIEEN-REKRKKDEIVKTLQARPEPDSSEWELIRHVTEAHRHTNAQGSHWKQK-RKFLPED------------IGQSPRAPTPDGDK-VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 270
[Close]
BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|6094470|sp|Q91241.1|THAA_PAROL (RecName: Full=Thyroid hormone receptor alpha-A; Short=THR-alpha-A; AltName: Full=Nuclear receptor subfamily 1 group A member 1-A)

HSP 1 Score: 95.9005 bits (237), Expect = 6.057e-20
Identity = 69/230 (30.00%), Postives = 112/230 (48.70%), Query Frame = 0 
Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + R+LI +N      + M V+  +   +  + + E +         TN +  SW  K  + ++++               S ++P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAK-RRLIEENREKRKREEM-VRTLQIRPEPDTAEWELIRMATDAHRHTNAQGSSWKQK-RKFLSDD------------IGQSPMVPTSDGDK-VDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 270
[Close]
BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|13431914|sp|Q90382.1|THA_CAIMO (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.770e-19
Identity = 74/244 (30.33%), Postives = 117/244 (47.95%), Query Frame = 0 
Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + RKLI +N     ++ M +K  +     S+ + E +    +    TN +   W  K  + + E+  +G            S +  +    ++D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   36 MSGYIPSYLDKDEQCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAK-RKLIEENRERRRKEEM-IKSLQHRPSPSAEEWELIHVVTEAHRSTNAQGSHWKQK-RKFLPED--IGQ-----------SPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 261
[Close]
BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|135710|sp|P04625.1|THA_CHICK (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.859e-19
Identity = 74/244 (30.33%), Postives = 117/244 (47.95%), Query Frame = 0 
Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + RKLI +N     ++ M +K  +     S+ + E +    +    TN +   W  K  + + E+  +G            S +  +    ++D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   37 MSGYIPSYLDKDEQCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAK-RKLIEENRERRRKEEM-IKSLQHRPSPSAEEWELIHVVTEAHRSTNAQGSHWKQK-RKFLPED--IGQ-----------SPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 262
[Close]
BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A)

HSP 1 Score: 93.9745 bits (232), Expect = 1.952e-19
Identity = 70/244 (28.69%), Postives = 114/244 (46.72%), Query Frame = 0 
Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +  +C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ GKC I +  R +C++CRF KCI  GM  DLV+DD +++ + RKLI +N      K  + K      + +  + E +    +    TN +   W  K  + + E+               + ++    G + +D E   +  K +        +FA+    F ELP EDQ  LLK    + +SL  A
Sbjct:    5 MSGYIPSYLDKDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLAK-RKLIEEN-REKRRKDEIQKSLVQKPEPTQEEWELIQVVTEAHVATNAQGSHWKQK-RKFLPED------------IGQAPIVNAPEGGK-VDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 230
[Close]
BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|6094472|sp|O42295.2|THA_APTPA (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.032e-19
Identity = 74/244 (30.33%), Postives = 117/244 (47.95%), Query Frame = 0 
Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + RKLI +N     ++ M +K  +     S+ + E +    +    TN +   W  K  + + E+  +G            S +  +    ++D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   37 MSGYIPSYLDKDEQCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCVIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAK-RKLIEENRERRRKEEM-IKSLQHRPNPSAEEWELIHVVTEAHRSTNAQGSHWKQK-RKFLPED--IGQ-----------SPMASMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 262
[Close]
BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2)

HSP 1 Score: 93.5893 bits (231), Expect = 2.063e-19
Identity = 70/244 (28.69%), Postives = 115/244 (47.13%), Query Frame = 0 
Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +  +C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ GKC I +  R +C++CRF KCI  GM  DLV+DD++++ + RKLI +N      K  + K      + +  + E +    +    TN +   W  K  + + E+               + ++    G + +D E   +  K +        +FA+    F ELP EDQ  LLK    + +SL  A
Sbjct:    5 MSGYIPSYLDKDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAK-RKLIEEN-REKRRKDELQKTLVQKPEPTPEEWELIQVVTEAHVATNAQGSHWKQK-RKFLPED------------IGQAPIVNAPEGGK-VDLEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 230
[Close]
BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|2500920|sp|Q28570.1|THA_SHEEP (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.893e-19
Identity = 71/244 (29.10%), Postives = 112/244 (45.90%), Query Frame = 0 
Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+   C I +  R +C+ CRF KCI  GM  DLV+DD+++V + RKLI QN     ++ M+   ++  + T   + + +    +    TN +   W  +               D +      S I  +    ++D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   39 MSGYIPSYLDKDEQCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAK-RKLIEQNRERRRKEEMIRSLQQRPEPTPE-EWDLIHVATEAHRSTNAQGSHWKQRRK----------FLPDDI----GQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 264
[Close]
BLAST of thyroid hormone receptor alpha a vs. SwissProt
Match: gi|215273960|sp|Q9PVE4.2|THB_DANRE (RecName: Full=Thyroid hormone receptor beta; Short=TR-beta; Short=TRb; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=Thyroid hormone receptor beta-1; Short=TRbeta1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.484e-19
Identity = 68/234 (29.06%), Postives = 112/234 (47.86%), Query Frame = 0 
Query:    8 RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            +  +C +CG  +  YH  Y   +C  C+ FFRR +++  NP + CK+ GKC I +  R +C++CRF KCI  GM  DLV+DD++++ + RKLI +N      + +        + T   + E +    +    TN +   W  K   +    S++G  +       S+ ++    G + +D E   +  K +        +FA+    F ELP EDQ  LLK    + +SL  A
Sbjct:   28 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAK-RKLIEENRERRRREELQKTVWDRPEPTQE-EWEMIRVVTEAHMATNAQGNHWKQKRKFL----SAVGVKEAKPEDIGSAPIVNAPEGNK-VDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 252
[Close]
BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|657600362|gb|AID52842.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 108.227 bits (269), Expect = 9.469e-21
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 0 
Query:    7 KRSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFR 96
            +RS++C+IC  NS+++HLNYG  +C SCRAFFRR ++  R  K  CK    C++T+ NR KCRKCR + C+  GM    VM++ QK  RFR
Sbjct:   30 RRSKICAICLTNSDSFHLNYGAPTCLSCRAFFRRIVQNGRVNKLTCKRNNDCDVTQSNRTKCRKCRLEACLKAGMNMQSVMNEIQKHDRFR 120
[Close]
BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1169057796|ref|XP_020441622.1| (thyroid hormone receptor alpha isoform X2 [Monopterus albus])

HSP 1 Score: 103.605 bits (257), Expect = 1.868e-20
Identity = 72/230 (31.30%), Postives = 117/230 (50.87%), Query Frame = 0 
Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DDT++V + R+LI +N     ++ M V+  +   + ++ + E +    +    TN +  SW  K  + + ++  +GH            ++P  GG + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGCCIIDKLTRNQCQLCRFKKCISVGMAMDLVLDDTKRVAK-RRLIEENRERRKKEEM-VRMLQTRPEPNTTEWELIRMATEAHRHTNAQGSSWKQK-RKFLPDD--IGH----------GPIVPTFGGDK-VDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 270
[Close]
BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1169057794|ref|XP_020441621.1| (thyroid hormone receptor alpha isoform X1 [Monopterus albus])

HSP 1 Score: 103.605 bits (257), Expect = 1.976e-20
Identity = 72/230 (31.30%), Postives = 117/230 (50.87%), Query Frame = 0 
Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DDT++V + R+LI +N     ++ M V+  +   + ++ + E +    +    TN +  SW  K  + + ++  +GH            ++P  GG + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   59 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGCCIIDKLTRNQCQLCRFKKCISVGMAMDLVLDDTKRVAK-RRLIEENRERRKKEEM-VRMLQTRPEPNTTEWELIRMATEAHRHTNAQGSSWKQK-RKFLPDD--IGH----------GPIVPTFGGDK-VDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 270
[Close]
BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1101609565|ref|XP_018969184.1| (PREDICTED: thyroid hormone receptor alpha-like [Cyprinus carpio])

HSP 1 Score: 103.219 bits (256), Expect = 6.776e-20
Identity = 78/244 (31.97%), Postives = 117/244 (47.95%), Query Frame = 0 
Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + R+LI +N     ++ MV   K   + TSS + E +    +    TN +   W  K  + + E+               S V P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   30 MSGYIPSYLDKDEPCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAK-RRLIEENREKRKKEEMVKSLKTRPEPTSS-EWELIRMVTEAHRHTNAQGSHWKQK-RKFLPED------------IGQSPVAPTSDGDK-VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 255
[Close]
BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1025325094|ref|XP_016387827.1| (PREDICTED: thyroid hormone receptor alpha [Sinocyclocheilus rhinocerous] >gi|1025325098|ref|XP_016387829.1| PREDICTED: thyroid hormone receptor alpha [Sinocyclocheilus rhinocerous] >gi|1025325102|ref|XP_016387830.1| PREDICTED: thyroid hormone receptor alpha [Sinocyclocheilus rhinocerous])

HSP 1 Score: 102.834 bits (255), Expect = 9.787e-20
Identity = 74/230 (32.17%), Postives = 113/230 (49.13%), Query Frame = 0 
Query:   12 CSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + R+LI +N     ++ MV   K   + TSS + E +    +    TN +   W  K  + + E+               S V P   G + +D E   E  K +        +FA+  + FSELP EDQ  LLK    + +SL  A
Sbjct:   52 CVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAK-RRLIEENREKRKKEEMVKSLKTRPEPTSS-EWELIRMVTEAHRHTNAQGSHWKQK-RKFLPED------------IGQSPVAPTSDGDK-VDLEAFSEFTKIITPAITRVVDFAKKLSMFSELPCEDQIILLKGCCMEIMSLRAA 263
[Close]
BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|551703637|gb|AGY36897.1| (thyroid hormone receptor alpha A [Acanthogobius hasta])

HSP 1 Score: 102.449 bits (254), Expect = 1.158e-19
Identity = 73/236 (30.93%), Postives = 117/236 (49.58%), Query Frame = 0 
Query:    6 PKRSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            P++   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KCI  GM  DLV+DD+++V + R+LI QN     +K   V+  +   +  S + E +    +  + TN +  SW  K  + + ++   G            S++P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   38 PEKDEPCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVAK-RRLIEQN-REKRKKEETVRMLQLRPEPDSSEWELIRMVTEAHKNTNAQGSSWKQK-RKFMPDDIGQG------------SMVPTSDGDK-VDLEAFSEFTKIMTPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 255
[Close]
BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|551703635|gb|AGY36896.1| (thyroid hormone receptor beta [Acanthogobius hasta])

HSP 1 Score: 102.064 bits (253), Expect = 1.190e-19
Identity = 76/241 (31.54%), Postives = 115/241 (47.72%), Query Frame = 0 
Query:    8 RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSN-------GDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            +  +C +CG  +  YH  Y   +C  C+ FFRR +++  NP + CKF GKC I +  R +C++CRF KCI  GM  DLV+DD++++ + RKLI +N         V + ++  +KT    +EP            +    TN +   W  K  R     + +   K   I  H+S V P  G   ++D E   +  K +        +FA+    F ELP EDQ  LLK    + +SL  A
Sbjct:   26 KDELCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLNPTYACKFEGKCAIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAK-RKLIEEN--------RVKRKREELQKTVFDRLEPTQEVWELIRMVTEAHMATNAQGNHWKQK--RKFLSAAGVKEDKPEEIG-HASMVNPPEGN--KVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAA 250
[Close]
BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1024959599|ref|XP_016300793.1| (PREDICTED: thyroid hormone receptor alpha isoform X2 [Sinocyclocheilus anshuiensis])

HSP 1 Score: 102.064 bits (253), Expect = 1.542e-19
Identity = 77/244 (31.56%), Postives = 117/244 (47.95%), Query Frame = 0 
Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KC+  GM  DLV+DD+++V + R+LI +N     ++ MV   K   + TSS + E +    +    TN +   W  K  + + E+               S V P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   30 MSGYIPSYLDKDEPCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCLAVGMAMDLVLDDSKRVAK-RRLIEENREKRKKEEMVKSLKTRPEPTSS-EWELIRMVTEAHRHTNAQGSHWKQK-RKFLPED------------IGQSPVAPTSDGDK-VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 255
[Close]
BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1020415287|ref|XP_016126475.1| (PREDICTED: thyroid hormone receptor alpha isoform X2 [Sinocyclocheilus grahami])

HSP 1 Score: 101.679 bits (252), Expect = 1.755e-19
Identity = 77/244 (31.56%), Postives = 117/244 (47.95%), Query Frame = 0 
Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KC+  GM  DLV+DD+++V + R+LI +N     ++ MV   K   + TSS + E +    +    TN +   W  K  + + E+               S V P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   30 MSGYIPSYLDKDEPCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCLAVGMAMDLVLDDSKRVAK-RRLIEENREKRKKEEMVKSLKTRPEPTSS-EWELIRMVTEAHRHTNAQGSHWKQK-RKFLPED------------IGQSPVAPTSDGDK-VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 255
[Close]
BLAST of thyroid hormone receptor alpha a vs. nr
Match: gi|1024959597|ref|XP_016300792.1| (PREDICTED: thyroid hormone receptor alpha isoform X1 [Sinocyclocheilus anshuiensis])

HSP 1 Score: 101.293 bits (251), Expect = 2.877e-19
Identity = 77/244 (31.56%), Postives = 117/244 (47.95%), Query Frame = 0 
Query:    1 MSGKEPK---RSRVCSICGANSETYHLNYGVSSCFSCRAFFRRALERTRNPKFNCKFGGKCEITEKNR-KCRKCRFDKCIGQGMKRDLVMDDTQKVQRFRKLIRQNLLADPEKGMVVKYKKASKKTSSMDMEPMSNGDQTSEGTNPKIESWNGKWDRIIAENSSLGHFKDSVIRFHSSSVIPGLGGTRELDREYLVEHLKKVASLFR---NFAQDNTEFSELPTEDQETLLKANTTKFLSLIIA 237
            MSG  P    +   C +CG  +  YH  Y   +C  C+ FFRR +++  +P ++CK+ G C I +  R +C+ CRF KC+  GM  DLV+DD+++V + R+LI +N     ++ MV   K   + TSS + E +    +    TN +   W  K  + + E+               S V P   G + +D E   E  K +        +FA+    FSELP EDQ  LLK    + +SL  A
Sbjct:   38 MSGYIPSYLDKDEPCVVCGDKATGYH--YRCITCEGCKGFFRRTIQKNLHPSYSCKYDGCCIIDKITRNQCQLCRFKKCLAVGMAMDLVLDDSKRVAK-RRLIEENREKRKKEEMVKSLKTRPEPTSS-EWELIRMVTEAHRHTNAQGSHWKQK-RKFLPED------------IGQSPVAPTSDGDK-VDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAA 263
The following BLAST results are available for this feature:
BLAST of thyroid hormone receptor alpha a vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 19
Match NameE-valueIdentityDescription
EMLSAG000000041743.148e-1134.62supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-... [more]
EMLSAG000000099692.135e-1034.12supercontig:LSalAtl2s:LSalAtl2s651:302705:304416:-... [more]
EMLSAG000000019192.787e-1035.80supercontig:LSalAtl2s:LSalAtl2s132:616435:622808:1... [more]
EMLSAG000000077415.551e-1037.80supercontig:LSalAtl2s:LSalAtl2s450:172104:174744:-... [more]
EMLSAG000000089022.148e-935.29supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1... [more]
EMLSAG000000124864.140e-933.33supercontig:LSalAtl2s:LSalAtl2s91:348479:353390:-1... [more]
EMLSAG000000078941.039e-833.33supercontig:LSalAtl2s:LSalAtl2s466:351370:353021:1... [more]
EMLSAG000000064541.340e-831.58supercontig:LSalAtl2s:LSalAtl2s3535:4892:6220:-1 g... [more]
EMLSAG000000056207.144e-733.33supercontig:LSalAtl2s:LSalAtl2s301:514440:538934:1... [more]

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BLAST of thyroid hormone receptor alpha a vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|13431919|sp|Q9W6N4.1|THA_HIPHI4.481e-2030.00RecName: Full=Thyroid hormone receptor alpha; AltN... [more]
gi|13431920|sp|Q9W785.1|THA_SALSA5.529e-2030.87RecName: Full=Thyroid hormone receptor alpha; AltN... [more]
gi|6094470|sp|Q91241.1|THAA_PAROL6.057e-2030.00RecName: Full=Thyroid hormone receptor alpha-A; Sh... [more]
gi|13431914|sp|Q90382.1|THA_CAIMO1.770e-1930.33RecName: Full=Thyroid hormone receptor alpha; AltN... [more]
gi|135710|sp|P04625.1|THA_CHICK1.859e-1930.33RecName: Full=Thyroid hormone receptor alpha; AltN... [more]
gi|135713|sp|P18117.1|THBA_XENLA1.952e-1928.69RecName: Full=Thyroid hormone receptor beta-A; Sho... [more]
gi|6094472|sp|O42295.2|THA_APTPA2.032e-1930.33RecName: Full=Thyroid hormone receptor alpha; AltN... [more]
gi|1729929|sp|Q02965.2|THB_LITCT2.063e-1928.69RecName: Full=Thyroid hormone receptor beta; AltNa... [more]
gi|2500920|sp|Q28570.1|THA_SHEEP4.893e-1929.10RecName: Full=Thyroid hormone receptor alpha; AltN... [more]
gi|215273960|sp|Q9PVE4.2|THB_DANRE7.484e-1929.06RecName: Full=Thyroid hormone receptor beta; Short... [more]

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BLAST of thyroid hormone receptor alpha a vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|657600362|gb|AID52842.1|9.469e-2149.45nuclear receptor [Tigriopus japonicus][more]
gi|1169057796|ref|XP_020441622.1|1.868e-2031.30thyroid hormone receptor alpha isoform X2 [Monopte... [more]
gi|1169057794|ref|XP_020441621.1|1.976e-2031.30thyroid hormone receptor alpha isoform X1 [Monopte... [more]
gi|1101609565|ref|XP_018969184.1|6.776e-2031.97PREDICTED: thyroid hormone receptor alpha-like [Cy... [more]
gi|1025325094|ref|XP_016387827.1|9.787e-2032.17PREDICTED: thyroid hormone receptor alpha [Sinocyc... [more]
gi|551703637|gb|AGY36897.1|1.158e-1930.93thyroid hormone receptor alpha A [Acanthogobius ha... [more]
gi|551703635|gb|AGY36896.1|1.190e-1931.54thyroid hormone receptor beta [Acanthogobius hasta... [more]
gi|1024959599|ref|XP_016300793.1|1.542e-1931.56PREDICTED: thyroid hormone receptor alpha isoform ... [more]
gi|1020415287|ref|XP_016126475.1|1.755e-1931.56PREDICTED: thyroid hormone receptor alpha isoform ... [more]
gi|1024959597|ref|XP_016300792.1|2.877e-1931.56PREDICTED: thyroid hormone receptor alpha isoform ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold235_size242898supercontigscaffold235_size242898:99349..103659 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
Note-
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1snap_masked-scaffold235_size242898-processed-gene-1.1-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold235_size242898:99349..103659+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold235_size242898-processed-gene-1.1 ID=snap_masked-scaffold235_size242898-processed-gene-1.1|Name=thyroid hormone receptor alpha a|organism=Tigriopus kingsejongensis|type=gene|length=4311bp|location=Sequence derived from alignment at scaffold235_size242898:99349..103659+ (Tigriopus kingsejongensis)
ATGTCGGGAAAGGAACCAAAACGAAGCAGAGTTTGCTCCATTTGTGGAGC
CAATTCTGAGACCTACCACTTGAATTATGGGGTAAGCAGCTGCTTTAGCT
GTAGAGCATTCTTCCGGAGAGCCCTGGAACGAACGAGGAACCCCAAGTTC
AACTGCAAGTTTGGTGGCAAGTGTGAAATCACCGAGAAGAACCGAAAGTG
CAGAAAATGCAGATTCGACAAATGCATCGGGCAAGGAATGAAGCGCGACC
TGGTCATGGACGACACCCAAAAAGTGCAACGTTTCCGAAAGCTCATCCGC
CAAAATCTTTTGGCTGATCCCGAGAAGGGTATGGTGGTCAAGTACAAGAA
GGCCTCGAAGAAGACGAGCTCCATGGACATGGAGCCAATGAGTAACGGTG
ATCAGACTTCAGAGGGGACAAATCCCAAGATCGAGTCGTGGAACGGCAAG
TGGGACAGGATCATTGCCGAAAACAGTTCCTTAGGGCATTTCAAAGACTC
GGTCATCCGATTCCATAGCTCCTCGGTGATTCCAGGGCTGGGTGGAACCC
GGGAGTTGGACAGAGAGTACTTGGTAGAGCACCTCAAGAAAGTTGCTTCT
CTATTCAGAAATTTTGCTCAAGACAACACCGAGTTTTCTGAATTGCCTAC
CGAGGATCAAGAGACCCTCCTGAAGGCGAACACCACCAAGTTTTTGAGCT
TGATCATTGCCAACTATCTGACTCTACCTTTCCCTGATGGAATCAACTGG
CTACTACTCGGACAGATCATTCCAGGCTTGGAAGATTTGGCCCTGAACAA
GTCCTCCCCAGCATTCCTTTGTTTCAGTATTGGACTAGCCATTGGCGAAG
ACTTTCCTGGCTTGATCTCACTCTTGGAGGAGGTAGACATGTTCCAATTC
AATTGCTCCAACATTGGATCAATCGCATTGGGCATTTTGTTTCACATTGG
GGACCAGAGCAATGTCCCCCTTGAGGAACCCACACATGTCAGCACATCAC
AAAACGAAATATTTCACGTCCTCGAGAGCCTAGTGGATGTGGAGCCTTTC
ATGAACTGCCTCCAGCAAATATCCAAGAAAGTCATACCCTTCTGGTTTCC
AGAAGTGACCCAGGATTCCCATTCGCTCTTACCAGTCAGCAGCCTTGCTT
TTGAAGACTCGTATGAGCGGCTTCAAACTGATCTCCAGTACTTCGCCGAG
GTCAACGATATTGTTAACTACGGCGAGGATCTCATGATGGAATGCATCAT
GTTCAACTTTGATGTCCCTCTCACCAAGCGGTTCTATGGGATGATAGCTC
AGATCTGGGCCCAGAGATTCTTTTACGTCCTCAGGAAAACAACGAATATC
AAGGAGAAACCAGTTGAAGTCCAGAACCAGATTCTTGCGCGAATGGTCCT
GCCTCTCATCGCATTGGTCCAAGCGCGAATGGAAGCCCTTCCAGTAGTCG
AGGAACAAATTCGATTTTGCTGCGGCACAAGTGACATCGAGGAATACATC
GACAAGTACCGAGATATTGTCCCCGACAAGAGCTATCAACTCATGAAGAT
CCGTAGCATGAACAAGAACTACGCCCTCTACGACAAGGAAACACAAGACG
ACCTGGTGGCACTTAACAAGGAGCTCATGCCAATGGTGGCAGACGAGACC
TTGTTCCGCATTATCATTCTCTTCACCATGGCCGCCTGTGTGCTGGACCC
AGCCAATGACAACTCCGACATCTACGTCAAGCACTTCAAGTATCAGCTCG
AATCGAAGGGGCACCACGATCCGGACCTGTCCCTCGCGATTTGCGTGCAG
AACACCAAGAAGCTGACGAAAGTCATGAGCAAAGTGTGTGGAATGTCCTA
ACTACACTACTACTTCAATTCGGTGTTTAGCGCGCACTTTGTTTTTGGGC
ACTACCTCAAATGTGAAACCATCCTGCTCACATCTGTCGATACACAGTAA
CAGGTCTACGGTAGTTCTAGTTGTTATTCAATTCAGGGTGCACCCTATAT
TTTAGTGTCGTGAGAAAAGAAACATAGCTATCTATCTATAAATCTATATA
TAATGGAAGTATGGAAATAAATATACGTTCCCAAGATCTCTGCTACACTC
TTTGCAATCCTCATCATCTACAAGTTACATAGAACAGAGGCGATATGTCA
GCTAATATCATTAAGTATGCTTTGGGTCGATTTACTCCGTATCATCGTAG
TACCAATCTTGATCAATTGCTGTTTCAGTCATCTTGCCTGAATCTTGGTT
TGCCACGCACACTAAGAAAGAAGTCTCAATCAGATGAAACTCTCTGAGGT
GAGAAAGACCTCATCGCAGTGAAACACCCTTCGAATCCCTCGATACTAAG
GGAAATAAGACGGCCTTGCGGATAGAGCTTCCCTCTGATGGGGGTTTGCC
CGTTCCCTACCGAATACCTAAGTTTCACCATAAATTATGTTAAGGGTGGT
TAGATTTTTTGAGAAAGGAGTACAAATTACCCTAATTATGCTTGAGTTTG
TACAATGTCCGTACAAATATTTTTATTTCTTATGTCTGCTATAACCGTGA
CCCCGTTAGGTATTGGCACTTCTCACAGCCAATCCCACTATATGTGCAGT
ACATGATAGTACTTGTACCGAGTGCGAACGCAAAACTTTCCGTTGTGCCA
AGTGAATTTGTGACATCAATGTTTGCTTAAGGGTGCATTAGTGTAAGTTT
CATGAAACTTGCGAATCTCATACCGGTTGGTGATTGGTAACTTTTTTTTA
TTGCCTCTTAAATCTAGTGGCAAAATCCCAAAAAAGGTAGAATCTTTGAC
AGAATACTTGGAATAATCGACAGCCAAAATCGGCTTGAGCTTGATTCAAT
CCATGGTCAAAAAAGCCAAAGGTGTTAATAACCAACATATCATTATCAAA
TGTATCATGTTAGACCTGAAGGGTCTTTTGAGAGAAATATGAGCTACTAG
TTATGATTGCGACTCTCATGGTCTAGGAATATCGGGAGACACTGTATAGG
TGCGGCCAAATCTTGAGGAAGGGTCCCTTCTGGTTCCCCACAAATCAAAG
TAGTGATTGGAACTGGATTGCAGGGGCTGCACGCTGACTCGCTAAATGTT
ATGTTTGGTGTGCGTAGTTCTTTATTTCAATCATAACTGCTTCGTCAATC
CGTCTCCTGGAGTAATGTCACCAGGAGGCGATTTTCGAGCAAGAGCGTCT
AATTAGTAAAAGCTCACTGCATTGGCAGAAGTACATTACAATTCCTCCCC
TCCCCTGAGCGTCAGCAGGGATGTGAGGAATGTTATGACTAGGGCTGTAA
AAACCTGGAAAACACTGTTTGCTGCCTTTTTCGTTTTTTTTTGCTGGAAG
TAATCTTAAATGCTGGAAATAGCCTTAAATGCTGGAAATCTATTTTTTTT
CTGGAATTAAAAATAAAATATCGGTATATGCCTGACTGTAAATGCTTCAA
CATTGGCAAAAAACTTAAAGCTGGAGTCCAAATTACTTGGAGAAGAAAAT
GGGTTCAAGCCAGATTTCATCAAAATTCAGCGTGGCTTTTTTGTATAGTT
TTATCCGCTTCCAACGTTTCAAAAAGTGGCTAATCCTAGCAAGGGTGTAT
TTTTGGCTCGTTTCCGATTCACACCATTGTTAACAGATTTGTTGGATTTA
GACTGTCGGATCCTGAAATTGTGGAACGAAATGTGATTGTGACATTTACA
AAGCTATCAAATAAAGTGAATTTAAAAAGAGGAAGTTTTTAAAAAGAATT
TAAAACCAATAGTTGGAGAGAAAACGTATTGTTACTGTAAAAATTCAAAC
ATTTGTCTAATTTTTTTATCTTCTTGTTTATCTTCATTGCTGCGTGTCGA
ATTATCGGTCACTTATGAAAATACTGCTCGTTCGCATCAGATTCTATGGC
GTTTGATCTTTTGCCTTCAAATATCAATTATTATTGTATTGAAGCCCGCA
AATAGTTTTCCTTTTCATTCTGTTTTCTCGACTGCATTACGTTTACTAAC
GTTTATTAAAATCTGCATTTTGACATTTGAAGTAGTTCAAATTATTGTGA
AATTTTTCTTTTACATATGTTTTTGGCAGTTTTTCGTGACTTCCTTCGTA
ACCTAATGGATGAATTTCCTCCATTGGGACTGTTTATTTCTTTTAGGCAT
TTATTAGATTTTTTGCGACTCCTCAGATTTCAGGCTTTTTTATTTGCTGT
AAATTTGGCTTTTTCACTCTTTTTTGCTGGTTTTATTTGCTGGAAACCTC
ACTGTCTTCTGTTTCCAGCGCTTTTTTTTGGCAATGTTTACTGTTTTTTT
TACAGCCCTAG
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Synonyms
The feature 'thyroid hormone receptor alpha a' has the following synonyms
Synonym
Tk06562
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