nuclear receptor 1, snap_masked-scaffold59_size442576-processed-gene-0.17 (gene) Tigriopus kingsejongensis

Overview
Namenuclear receptor 1
Unique Namesnap_masked-scaffold59_size442576-processed-gene-0.17
Typegene
OrganismTigriopus kingsejongensis (Tigriopus kingsejongensis)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24")

HSP 1 Score: 92.4337 bits (228), Expect = 3.863e-20
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0 
Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKR 123
            C +C D +  H+HYG I CFSC+AFFRR+   +    + C     C +    RK C+ CRY+KCL+ GMKPS VL+EEEK  R
Sbjct:   91 CNVCGDKAPDHIHYGGIACFSCRAFFRRSVPKHTT--YFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSR 171
[Close]
BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5")

HSP 1 Score: 89.3521 bits (220), Expect = 3.469e-19
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = 0 
Query:   38 TEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVC-----KNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVK 122
            T+ C+IC D +  H HYGAI CFSC+AFF RT      E+F C       SG+C +    R  C+ CRY  CL  GM PS V T EE+++
Sbjct:  134 TDVCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEERLQ 223
[Close]
BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19")

HSP 1 Score: 83.5741 bits (205), Expect = 2.302e-17
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 0 
Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFV-CKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKS 127
            CQIC + + KH++YG   C SC+AFFRR+ Q N+ ++F+ C  + +C +  K RK C+ CR++KC+  GM+ S V  + E  +R KKS
Sbjct:  107 CQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRE--RRSKKS 192
[Close]
BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22")

HSP 1 Score: 81.6481 bits (200), Expect = 9.330e-17
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 0 
Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKF-VCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKS 127
            CQIC + + KH++YG   C SC+AFFRR+ Q N+ ++F  C  + +C +  + RK C+ CR++KC+  GM+ S VL + E  +R KKS
Sbjct:  106 CQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGE--RRSKKS 191
[Close]
BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3")

HSP 1 Score: 79.7221 bits (195), Expect = 4.834e-16
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0 
Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVL 115
            C IC D +  H+HYGAI C SC+AFFRR    NA  ++ C     C +  + RK C+ CR+ KCL+ GMK + V+
Sbjct:   63 CHICSDTANDHIHYGAIACXSCRAFFRRAVICNA--EYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVM 135
[Close]
BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1")

HSP 1 Score: 73.1738 bits (178), Expect = 8.501e-14
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 0 
Query:   36 EATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKR 123
            +A+  C +C D +    HYG  TC  CK FF+RT Q NA  K+VC     C V  + R +C+ CR++KCL VGM   +V T+  K +R
Sbjct:  404 KASLLCAVCGDNAACQ-HYGVRTCEGCKGFFKRTVQKNA--KYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRR 488
[Close]
BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000004451 (supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1 gene:EMLSAG00000004451 transcript:EMLSAT00000004451 description:"snap_masked-LSalAtl2s231-processed-gene-9.18")

HSP 1 Score: 72.0182 bits (175), Expect = 1.282e-13
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 0 
Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMK 110
            C +C D  I   HYG  +C SCK FF+RT Q   N  +VC    +C V    RKKC  CR++KCL +GMK
Sbjct:  155 CPVCGD-KISGFHYGIFSCESCKGFFKRTVQNKKN--YVCLRGSQCPVTISTRKKCPACRFDKCLNIGMK 221
[Close]
BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6")

HSP 1 Score: 72.0182 bits (175), Expect = 1.308e-13
Identity = 45/119 (37.82%), Postives = 61/119 (51.26%), Query Frame = 0 
Query:   13 GTSSGDFA-----LRDPEESLEGGEVVLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEK-FVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFK 125
            G++SGDF        D  +S +G E      E C +C D  +   HYG +TC SCK FF+RT Q   N+K + C     C +    RK+C  CR++KCL VGMK   V  +  +  R K
Sbjct:  159 GSTSGDFGPGVVGQSDQPDSKDGME------ELCPVCGD-KVSGYHYGLLTCESCKGFFKRTVQ---NKKVYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGRNK 267
[Close]
BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53")

HSP 1 Score: 72.4034 bits (176), Expect = 1.632e-13
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 0 
Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGM 109
            C IC+D +   LHYG ITC  CK FF+RT Q      + C   GEC +    R +C+ CR++KCLQ GM
Sbjct:  283 CMICEDRATG-LHYGIITCEGCKGFFKRTVQNK--RIYTCVADGECEINKAQRNRCQYCRFQKCLQKGM 348
[Close]
BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0")

HSP 1 Score: 70.8626 bits (172), Expect = 3.487e-13
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 0 
Query:   37 ATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKR 123
            A E C +C D +  + HY A+ C  CK FFRR+   N+N  + CK +G+C +   +R+KC+ CR +KC   GM+   V+ E   +++
Sbjct:  169 AEELCLVCGDRASGY-HYNALACEGCKGFFRRSITKNSN--YTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQK 252
[Close]
BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|10720385|sp|Q20765.2|NHR7_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-7)

HSP 1 Score: 84.7297 bits (208), Expect = 4.452e-16
Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = 0 
Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKK 131
            C +C D   K +HYG + CF CK FFRR  +   N K+VC+    C V    R  CR CR+ KCL VGM P  V  + EK K+ K  L+KK
Sbjct:    9 CAVCGDTPAK-IHYGVLACFGCKGFFRRAVKDGRN-KYVCRFEKNCEVTKFERNACRYCRFRKCLLVGMNPDYVRPDREKSKKGKTVLSKK 97
[Close]
BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|6094474|sp|Q91279.1|THB_PAROL (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.910e-16
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 0 
Query:   22 RDPEESLEGGEV--VLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFK 125
            R  +E+++ G +   L+  E C +C D +  + HY  ITC  CK FFRRT Q N N  + CK  G+C +    R +C++CR++KC+ VGM   LVL + +++ + K
Sbjct:   11 RWKDEAIQNGYIPSYLDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRK 115
[Close]
BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|215273960|sp|Q9PVE4.2|THB_DANRE (RecName: Full=Thyroid hormone receptor beta; Short=TR-beta; Short=TRb; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=Thyroid hormone receptor beta-1; Short=TRbeta1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.910e-16
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 0 
Query:   22 RDPEESLEGGEV--VLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFK 125
            R  +E+++ G +   L+  E C +C D +  + HY  ITC  CK FFRRT Q N N  + CK  G+C +    R +C++CR++KC+ VGM   LVL + +++ + K
Sbjct:   11 RWKDEAMQNGYIPSYLDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRK 115
[Close]
BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A)

HSP 1 Score: 81.6481 bits (200), Expect = 1.590e-15
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 0 
Query:   35 LEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEKHPKTERHPALM 146
            L+  E C +C D +  + HY  ITC  CK FFRRT Q N +  + CK  G+C +    R +C++CR++KC+ VGM   LVL + +++   K+ L ++  EK  K E   +L+
Sbjct:   13 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLA--KRKLIEENREKRRKDEIQKSLV 121
[Close]
BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.015e-15
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 0 
Query:   35 LEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEKHPKTERHPALM 146
            L+  E C +C D +  + HY  ITC  CK FFRRT Q N +  + CK  G+C +    R +C++CR++KC+ VGM   LVL + +++   K+ L ++  EK  K E    L+
Sbjct:   13 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA--KRKLIEENREKRRKDELQKTLV 121
[Close]
BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|21264476|sp|Q09565.2|NHR20_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-20)

HSP 1 Score: 81.2629 bits (199), Expect = 3.582e-15
Identity = 45/132 (34.09%), Postives = 67/132 (50.76%), Query Frame = 0 
Query:   25 EESLEGGEVVLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAM----EKHPKTERHPALMSMSGDK 152
            +E   GG   +  T +C +C+ P     H+G+ +C +C AFFRRT   + N +F CK    C + H+LR  CR CR++KC++ GM+   V     + +R  K + KK M    E   K E        SGD+
Sbjct:    3 QERSSGGYSGIPPTSKCLVCEHPDGGSAHFGSTSCLACAAFFRRTV--SLNIQFQCKKDKNCVIFHELRMICRACRFDKCVKAGMRRECV-----QKRRSNKKIPKKHMNMLREDQIKMEYDECKFECSGDQ 127
[Close]
BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|6093482|sp|Q18192.2|NHR31_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-31)

HSP 1 Score: 81.6481 bits (200), Expect = 4.036e-15
Identity = 45/123 (36.59%), Postives = 62/123 (50.41%), Query Frame = 0 
Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVL-----TEEEKVKRFKKSLTKKAMEKHPKTERHPALMSMSGDKDLSRAV 158
            C +C D  I  LHYG + C+ CK FFRRT  G    ++ C+ S  C V    R  CR CR+++C+Q GM P  V      T ++KV R KK    + +  H        +M + GD D SR +
Sbjct:   82 CAVCGD-GIAKLHYGVLACYGCKGFFRRTLTGKY--RYACRFSNNCIVDKFQRNSCRYCRFQRCIQAGMDPKAVRPDRDQTGKQKVPRIKKKQIDEELLNH--------MMRLQGD-DWSRKL 192
[Close]
BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|10720139|sp|Q9XTJ4.1|NHR3_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-3)

HSP 1 Score: 80.8777 bits (198), Expect = 4.639e-15
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 0 
Query:   12 PGTSSGDFALRDPE--ESLEGGEVVLEATEE--CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFK 125
            PG +    +L  PE  E    GE  ++  E   C +C D +    HYG + CF CK FFRRT +   N  +VC+ S +C +    R  CR CR++KCL+VGM+P  +  + +K  R K
Sbjct:   20 PGQTFSMESLLKPELGEYSPSGENGIDGEESTICSVCCDEASGR-HYGVVACFGCKGFFRRTVRAGKN--YVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKTGRQK 134
[Close]
BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|14917017|sp|P41829.3|NHR6_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-6; AltName: Full=Nuclear receptor subfamily 4 group A member 5; AltName: Full=Steroid hormone receptor family member cnr8)

HSP 1 Score: 81.2629 bits (199), Expect = 6.629e-15
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 0 
Query:   31 GEVVLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLV 114
             E  L+A + C +C D ++  LHYGA TC  CK FF+RT Q N+  K+ C  +  C +  + R +C+ CRY+KCL+VGM   +V
Sbjct:  258 SETALDADKMCAVCNDRAVC-LHYGARTCEGCKGFFKRTVQKNS--KYTCAGNKTCPIDKRYRSRCQYCRYQKCLEVGMVKEIV 338
[Close]
BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|13431919|sp|Q9W6N4.1|THA_HIPHI (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.276e-15
Identity = 42/106 (39.62%), Postives = 60/106 (56.60%), Query Frame = 0 
Query:   35 LEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEKHPKTE 140
            LE  E C +C D +  + HY  ITC  CK FFRRT Q N +  + CK  G C +    R +C+ CR++KC+ VGM   LVL + ++V   K+ L ++  EK  + E
Sbjct:   53 LEKDEPCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA--KRRLIEENREKRKREE 155
[Close]
BLAST of nuclear receptor 1 vs. nr
Match: gi|1325265241|ref|XP_023336689.1| (oxysterols receptor LXR-alpha-like [Eurytemora affinis])

HSP 1 Score: 92.4337 bits (228), Expect = 5.703e-16
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 0 
Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGE-CNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEK 135
            CQ+C + + KH +YG   C SC+AFFRR+ Q      F C N  E C +    RK C+ CRY KCL  GM+PS +L+EEE+++RF      K  E+
Sbjct:  184 CQVCGEKAGKHSYYGGQVCPSCRAFFRRSVQSRCYTGFRCINRSESCPINLLTRKNCQYCRYHKCLSCGMRPSWILSEEERIRRFHGRTKGKGKEQ 279
[Close]
BLAST of nuclear receptor 1 vs. nr
Match: gi|74096287|ref|NP_001027658.1| (nuclear receptor 1 [Ciona intestinalis] >gi|3643829|gb|AAC42665.1| nuclear receptor 1 [Ciona intestinalis])

HSP 1 Score: 92.0485 bits (227), Expect = 5.867e-16
Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = 0 
Query:   35 LEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEKHPKTERHPALMSMSGDKDLSRA 157
            L+  EEC +C D +  + HY  ITC  CK FFRRT Q +  + + CK  G+C V    R +C+ CRYEKC+  GM   LVL E++++ +      +K +E++ +  RH  +  + G   + R 
Sbjct:   38 LDGNEECVVCGDKATGY-HYRCITCEGCKGFFRRTVQKDLQKTYQCKQRGKCQVNKVSRNQCQMCRYEKCIATGMATDLVLNEDKRIAK------RKLIERNRQLRRHKDISHVMGTWKVGRG 153
[Close]
BLAST of nuclear receptor 1 vs. nr
Match: gi|699247975|ref|XP_009860198.1| (PREDICTED: nuclear receptor 1 isoform X1 [Ciona intestinalis])

HSP 1 Score: 92.0485 bits (227), Expect = 7.068e-16
Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = 0 
Query:   35 LEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEKHPKTERHPALMSMSGDKDLSRA 157
            L+  EEC +C D +  + HY  ITC  CK FFRRT Q +  + + CK  G+C V    R +C+ CRYEKC+  GM   LVL E++++ +      +K +E++ +  RH  +  + G   + R 
Sbjct:   38 LDGNEECVVCGDKATGY-HYRCITCEGCKGFFRRTVQKDLQKTYQCKQRGKCQVNKVSRNQCQMCRYEKCIATGMATDLVLNEDKRIAK------RKLIERNRQLRRHKDISHVMGTWKVGRV 153
[Close]
BLAST of nuclear receptor 1 vs. nr
Match: gi|70571373|dbj|BAE06733.1| (nuclear receptor [Ciona intestinalis])

HSP 1 Score: 92.0485 bits (227), Expect = 7.195e-16
Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = 0 
Query:   35 LEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEKHPKTERHPALMSMSGDKDLSRA 157
            L+  EEC +C D +  + HY  ITC  CK FFRRT Q +  + + CK  G+C V    R +C+ CRYEKC+  GM   LVL E++++ +      +K +E++ +  RH  +  + G   + R 
Sbjct:   38 LDGNEECVVCGDKATGY-HYRCITCEGCKGFFRRTVQKDLQKTYQCKQRGKCQVNKVSRNQCQMCRYEKCIATGMATDLVLNEDKRIAK------RKLIERNRQLRRHKDISHVMGTWKVGRV 153
[Close]
BLAST of nuclear receptor 1 vs. nr
Match: gi|1216631975|gb|ASL70499.1| (nuclear receptor [Brachionus rotundiformis])

HSP 1 Score: 92.0485 bits (227), Expect = 7.379e-16
Identity = 44/118 (37.29%), Postives = 66/118 (55.93%), Query Frame = 0 
Query:   40 ECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRF----KKSLTKKAMEKHPKTERHPALMSMSGDKD 153
            +C +C D S    H+G I+C SCKAFFRR+ Q N  E + C  SGEC +    RK C+ CRY+ CL +GM+P  VL+++E+ +++    K        E+  K E     M+ + + D
Sbjct:  115 KCHVCGDKSTGS-HFGGISCESCKAFFRRSVQKNRFEDYKCSYSGECKMNTNTRKICQFCRYKTCLSIGMRPKWVLSDDERHQKYGNRRKNKQKTDVAEQENKDESETKNMTQASNSD 231
The following BLAST results are available for this feature:
BLAST of nuclear receptor 1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 22
Match NameE-valueIdentityDescription
EMLSAG000000126513.863e-2048.19supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 ge... [more]
EMLSAG000000041743.469e-1945.56supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-... [more]
EMLSAG000000102672.302e-1743.18supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1... [more]
EMLSAG000000119079.330e-1743.18supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1... [more]
EMLSAG000000082614.834e-1645.33supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 ... [more]
EMLSAG000000130048.501e-1442.05supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 ... [more]
EMLSAG000000044511.282e-1347.14supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1... [more]
EMLSAG000000089021.308e-1337.82supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1... [more]
EMLSAG000000085431.632e-1346.38supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1... [more]
EMLSAG000000050903.487e-1336.78supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-... [more]

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BLAST of nuclear receptor 1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
gi|10720385|sp|Q20765.2|NHR7_CAEEL4.452e-1645.05RecName: Full=Nuclear hormone receptor family memb... [more]
gi|6094474|sp|Q91279.1|THB_PAROL6.910e-1637.74RecName: Full=Thyroid hormone receptor beta; AltNa... [more]
gi|215273960|sp|Q9PVE4.2|THB_DANRE6.910e-1637.74RecName: Full=Thyroid hormone receptor beta; Short... [more]
gi|135713|sp|P18117.1|THBA_XENLA1.590e-1537.50RecName: Full=Thyroid hormone receptor beta-A; Sho... [more]
gi|1729929|sp|Q02965.2|THB_LITCT2.015e-1537.50RecName: Full=Thyroid hormone receptor beta; AltNa... [more]
gi|21264476|sp|Q09565.2|NHR20_CAEEL3.582e-1534.09RecName: Full=Nuclear hormone receptor family memb... [more]
gi|6093482|sp|Q18192.2|NHR31_CAEEL4.036e-1536.59RecName: Full=Nuclear hormone receptor family memb... [more]
gi|10720139|sp|Q9XTJ4.1|NHR3_CAEEL4.639e-1537.29RecName: Full=Nuclear hormone receptor family memb... [more]
gi|14917017|sp|P41829.3|NHR6_CAEEL6.629e-1542.86RecName: Full=Nuclear hormone receptor family memb... [more]
gi|13431919|sp|Q9W6N4.1|THA_HIPHI9.276e-1539.62RecName: Full=Thyroid hormone receptor alpha; AltN... [more]

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BLAST of nuclear receptor 1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25
Match NameE-valueIdentityDescription
gi|1325265241|ref|XP_023336689.1|5.703e-1643.75oxysterols receptor LXR-alpha-like [Eurytemora aff... [more]
gi|74096287|ref|NP_001027658.1|5.867e-1635.77nuclear receptor 1 [Ciona intestinalis] >gi|364382... [more]
gi|699247975|ref|XP_009860198.1|7.068e-1635.77PREDICTED: nuclear receptor 1 isoform X1 [Ciona in... [more]
gi|70571373|dbj|BAE06733.1|7.195e-1635.77nuclear receptor [Ciona intestinalis][more]
gi|1216631975|gb|ASL70499.1|7.379e-1637.29nuclear receptor [Brachionus rotundiformis][more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold59_size442576supercontigscaffold59_size442576:86496..88151 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
maker2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt2018-04-19
T. kingsejongensis proteins Blastp vs. NR2018-05-15
Properties
Property NameValue
NoteF:thyroid hormone receptor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
snap_masked-scaffold59_size442576-processed-gene-0.17-mRNA-1snap_masked-scaffold59_size442576-processed-gene-0.17-mRNA-1Tigriopus kingsejongensismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at scaffold59_size442576:86496..88151-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>snap_masked-scaffold59_size442576-processed-gene-0.17 ID=snap_masked-scaffold59_size442576-processed-gene-0.17|Name=nuclear receptor 1|organism=Tigriopus kingsejongensis|type=gene|length=1656bp|location=Sequence derived from alignment at scaffold59_size442576:86496..88151- (Tigriopus kingsejongensis)
ATGTCATTTGAGGAGAGCGGTGGTGCCTCATTTCCAGGGACTTCCTCCGG
GGATTTCGCCTTGAGGGATCCGGAGGAGAGTTTGGAGGGCGGCGAAGTTG
TTTTGGAAGCCACGGAGGAATGTCAGATTTGCAAGGATCCATCCATTAAG
CACCTTCACTATGGAGCCATCACTTGCTTCTCGTGCAAGGCCTTCTTTCG
AAGGACCAGTCAGGGCAATGCCAATGAGAAATTTGTGTGCAAGAACAGTG
GTGAGTGCAATGTGCTCCACAAGCTGAGGAAGAAATGTCGCAAGTGTCGC
TACGAAAAGTGCTTGCAAGTGGGCATGAAGCCCTCCTTGGTCTTGACCGA
GGAGGAGAAAGTGAAGCGCTTCAAGAAGTCCTTGACCAAGAAGGCCATGG
AGAAGCATCCCAAAACCGAGAGGCACCCGGCCTTGATGTCCATGAGTGGT
GACAAGGATTTGAGCCGAGCCGTTTCGTCCAGTAGTTCAATGTCCTACTA
TGAGGACCCTCACGAGGGCCGGCCGCCCGTGCATCCGGGATTGATGGGGC
GGGACAAGACGCCTCTGGATCATATCTGGGGCATGTCCCAGCGGAACGGC
TATCCCTCGTATGCCAAGCCGGCCGTGACCATGGCCGACGGCATTGGCAA
CCCCTACACCCGTTATAAAATGGTCCCCAAGTCCATCCACTTGCGATCCT
CCTACCCGGGTCCCAGTTCCATTCCCGTGGAGGCTCCTCCGCCTGGACAC
CCGGGCTATGAGGAGGACATTTGGAACCTCCACGAAGAGCGAGGCCAGCC
CGTTAGCAATCTCAGGATGGAGAACCTTCAATCCCTGGCCCTCGACGTTG
ACCCTGGCCTGGCCATCACCGAGTCGGAGGTGCTCCTCCTCCAGAAGCTG
CAGCATATCCACGACAGTAATTACCGATCCGTGGCATTTGGCGAGGATCT
CATCAAAAGTCTGGTCATGTCATCGGCCTTTGGCGTCCCCCTCTCACCTT
CTCACACTATGATGGCCTATCGACTCATGATTCAGCGAGTCACGAAGGTG
GCCCAAGGCCTGGACGAGTTCACGGAGTTGCCCGTGGAAGACCAGACCAT
GCTCCTCAAGAGCAATGCCGACCTCATGGTGAGCTTGAAGGGGGCCGGCT
TCTTCGACAACAAAAATCGCGGGATCGATCAAATCCTGTACACCCTCGGG
ATTGATGACATGGACGTGGCCAAGCGGATGGTGATGACCACGTCCAAGAC
CTTCGGCTGCATGATGAACCGCATCGACTACAAAAGCTATAACTCCCTGC
AAGATCTGACCAACCAGGACATGGAGCAACGCTACCAATGGCTCCTGGGT
CAAGTGGCCGAGGTCACGACGCTCTTTCCATCCCTCACCAAACTCATGAC
CTTCGTGGTCCTCTTCCTACCTCCCGAGGATGGAGTGCTGAAAGATGGAG
TTCGGGTTTGTCGCATGCAGAAATGGCTGCTCAACTTGGCCCATAAGCTG
GTGATCAGCCAATATTCGCCGGAGATTGGAGCAGACCTTTCCATGAAAAT
CACCAAAATATGTGACTACCTCAAGGAGATAACTATAATCAAACGTAACC
GACCATTAATTGCCCAAGTCGACGAAAATTCTCCTCAACCGGCCGGAGTC
AACTGA
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Synonyms
The feature 'nuclear receptor 1' has the following synonyms
Synonym
Tk11668
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