nuclear receptor 1, snap_masked-scaffold59_size442576-processed-gene-0.17 (gene) Tigriopus kingsejongensis

Overview


Name	nuclear receptor 1
Unique Name	snap_masked-scaffold59_size442576-processed-gene-0.17
Type	gene
Organism	Tigriopus kingsejongensis (Tigriopus kingsejongensis)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000012651 (supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 gene:EMLSAG00000012651 transcript:EMLSAT00000012651 description:"maker-LSalAtl2s959-snap-gene-0.24")

HSP 1 Score: 92.4337 bits (228), Expect = 3.863e-20
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0

Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKR 123
            C +C D +  H+HYG I CFSC+AFFRR+   +    + C     C +    RK C+ CRY+KCL+ GMKPS VL+EEEK  R
Sbjct:   91 CNVCGDKAPDHIHYGGIACFSCRAFFRRSVPKHTT--YFCSTDQACMITITTRKNCQFCRYKKCLESGMKPSWVLSEEEKSSR 171

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BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000004174 (supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-1 gene:EMLSAG00000004174 transcript:EMLSAT00000004174 description:"augustus_masked-LSalAtl2s220-processed-gene-3.5")

HSP 1 Score: 89.3521 bits (220), Expect = 3.469e-19
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = 0

Query:   38 TEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVC-----KNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVK 122
            T+ C+IC D +  H HYGAI CFSC+AFF RT      E+F C       SG+C +    R  C+ CRY  CL  GM PS V T EE+++
Sbjct:  134 TDVCRICGDIAPPHNHYGAIACFSCRAFFGRTVHKGTQERFRCVRGNPDESGQCMITKATRTHCQFCRYRGCLSAGMXPSYVTTAEERLQ 223

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BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000010267 (supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1 gene:EMLSAG00000010267 transcript:EMLSAT00000010267 description:"maker-LSalAtl2s680-augustus-gene-1.19")

HSP 1 Score: 83.5741 bits (205), Expect = 2.302e-17
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 0

Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFV-CKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKS 127
            CQIC + + KH++YG   C SC+AFFRR+ Q N+ ++F+ C  + +C +  K RK C+ CR++KC+  GM+ S V  + E  +R KKS
Sbjct:  107 CQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFICCSQTKDCIINLKTRKACQLCRFQKCVSAGMRVSWVFPDRE--RRSKKS 192

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BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000011907 (supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1 gene:EMLSAG00000011907 transcript:EMLSAT00000011907 description:"maker-LSalAtl2s83-augustus-gene-6.22")

HSP 1 Score: 81.6481 bits (200), Expect = 9.330e-17
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 0

Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKF-VCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKS 127
            CQIC + + KH++YG   C SC+AFFRR+ Q N+ ++F  C  + +C +  + RK C+ CR++KC+  GM+ S VL + E  +R KKS
Sbjct:  106 CQICGEVAGKHVYYGGQCCTSCRAFFRRSVQNNSYKQFSCCSKTEDCIINLQTRKSCQLCRFQKCISAGMRASWVLPDGE--RRSKKS 191

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BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000008261 (supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 gene:EMLSAG00000008261 transcript:EMLSAT00000008261 description:"maker-LSalAtl2s49-augustus-gene-8.3")

HSP 1 Score: 79.7221 bits (195), Expect = 4.834e-16
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0

Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVL 115
            C IC D +  H+HYGAI C SC+AFFRR    NA  ++ C     C +  + RK C+ CR+ KCL+ GMK + V+
Sbjct:   63 CHICSDTANDHIHYGAIACXSCRAFFRRAVICNA--EYHCSRDKTCFITKETRKHCQFCRFNKCLEAGMKNTWVM 135

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BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000013004 (supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 gene:EMLSAG00000013004 transcript:EMLSAT00000013004 description:"augustus_masked-LSalAtl2s98-processed-gene-9.1")

HSP 1 Score: 73.1738 bits (178), Expect = 8.501e-14
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 0

Query:   36 EATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKR 123
            +A+  C +C D +    HYG  TC  CK FF+RT Q NA  K+VC     C V  + R +C+ CR++KCL VGM   +V T+  K +R
Sbjct:  404 KASLLCAVCGDNAACQ-HYGVRTCEGCKGFFKRTVQKNA--KYVCLADKNCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKGRR 488

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BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000004451 (supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1 gene:EMLSAG00000004451 transcript:EMLSAT00000004451 description:"snap_masked-LSalAtl2s231-processed-gene-9.18")

HSP 1 Score: 72.0182 bits (175), Expect = 1.282e-13
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 0

Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMK 110
            C +C D  I   HYG  +C SCK FF+RT Q   N  +VC    +C V    RKKC  CR++KCL +GMK
Sbjct:  155 CPVCGD-KISGFHYGIFSCESCKGFFKRTVQNKKN--YVCLRGSQCPVTISTRKKCPACRFDKCLNIGMK 221

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BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000008902 (supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1 gene:EMLSAG00000008902 transcript:EMLSAT00000008902 description:"maker-LSalAtl2s554-snap-gene-5.6")

HSP 1 Score: 72.0182 bits (175), Expect = 1.308e-13
Identity = 45/119 (37.82%), Postives = 61/119 (51.26%), Query Frame = 0

Query:   13 GTSSGDFA-----LRDPEESLEGGEVVLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEK-FVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFK 125
            G++SGDF        D  +S +G E      E C +C D  +   HYG +TC SCK FF+RT Q   N+K + C     C +    RK+C  CR++KCL VGMK   V  +  +  R K
Sbjct:  159 GSTSGDFGPGVVGQSDQPDSKDGME------ELCPVCGD-KVSGYHYGLLTCESCKGFFKRTVQ---NKKVYTCVADRSCVIDKTQRKRCPYCRFQKCLDVGMKLEAVRHDRMRGGRNK 267

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BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000008543 (supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1 gene:EMLSAG00000008543 transcript:EMLSAT00000008543 description:"maker-LSalAtl2s527-augustus-gene-1.53")

HSP 1 Score: 72.4034 bits (176), Expect = 1.632e-13
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 0

Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGM 109
            C IC+D +   LHYG ITC  CK FF+RT Q      + C   GEC +    R +C+ CR++KCLQ GM
Sbjct:  283 CMICEDRATG-LHYGIITCEGCKGFFKRTVQNK--RIYTCVADGECEINKAQRNRCQYCRFQKCLQKGM 348

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BLAST of nuclear receptor 1 vs. L. salmonis genes
Match: EMLSAG00000005090 (supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-1 gene:EMLSAG00000005090 transcript:EMLSAT00000005090 description:"augustus_masked-LSalAtl2s269-processed-gene-3.0")

HSP 1 Score: 70.8626 bits (172), Expect = 3.487e-13
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 0

Query:   37 ATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKR 123
            A E C +C D +  + HY A+ C  CK FFRR+   N+N  + CK +G+C +   +R+KC+ CR +KC   GM+   V+ E   +++
Sbjct:  169 AEELCLVCGDRASGY-HYNALACEGCKGFFRRSITKNSN--YTCKWNGDCEIDMYMRRKCQACRLKKCYATGMRAECVVPERTCIQK 252

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BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|10720385|sp|Q20765.2|NHR7_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-7)

HSP 1 Score: 84.7297 bits (208), Expect = 4.452e-16
Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = 0

Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKK 131
            C +C D   K +HYG + CF CK FFRR  +   N K+VC+    C V    R  CR CR+ KCL VGM P  V  + EK K+ K  L+KK
Sbjct:    9 CAVCGDTPAK-IHYGVLACFGCKGFFRRAVKDGRN-KYVCRFEKNCEVTKFERNACRYCRFRKCLLVGMNPDYVRPDREKSKKGKTVLSKK 97

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BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|6094474|sp|Q91279.1|THB_PAROL (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.910e-16
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 0

Query:   22 RDPEESLEGGEV--VLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFK 125
            R  +E+++ G +   L+  E C +C D +  + HY  ITC  CK FFRRT Q N N  + CK  G+C +    R +C++CR++KC+ VGM   LVL + +++ + K
Sbjct:   11 RWKDEAIQNGYIPSYLDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRK 115

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BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|215273960|sp|Q9PVE4.2|THB_DANRE (RecName: Full=Thyroid hormone receptor beta; Short=TR-beta; Short=TRb; AltName: Full=Nuclear receptor subfamily 1 group A member 2; AltName: Full=Thyroid hormone receptor beta-1; Short=TRbeta1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.910e-16
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = 0

Query:   22 RDPEESLEGGEV--VLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFK 125
            R  +E+++ G +   L+  E C +C D +  + HY  ITC  CK FFRRT Q N N  + CK  G+C +    R +C++CR++KC+ VGM   LVL + +++ + K
Sbjct:   11 RWKDEAMQNGYIPSYLDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRK 115

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BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|135713|sp|P18117.1|THBA_XENLA (RecName: Full=Thyroid hormone receptor beta-A; Short=TRbetaA; Short=xTR; AltName: Full=Nuclear receptor subfamily 1 group A member 2-A)

HSP 1 Score: 81.6481 bits (200), Expect = 1.590e-15
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 0

Query:   35 LEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEKHPKTERHPALM 146
            L+  E C +C D +  + HY  ITC  CK FFRRT Q N +  + CK  G+C +    R +C++CR++KC+ VGM   LVL + +++   K+ L ++  EK  K E   +L+
Sbjct:   13 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDNKRLA--KRKLIEENREKRRKDEIQKSLV 121

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BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|1729929|sp|Q02965.2|THB_LITCT (RecName: Full=Thyroid hormone receptor beta; AltName: Full=Nuclear receptor subfamily 1 group A member 2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.015e-15
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 0

Query:   35 LEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEKHPKTERHPALM 146
            L+  E C +C D +  + HY  ITC  CK FFRRT Q N +  + CK  G+C +    R +C++CR++KC+ VGM   LVL + +++   K+ L ++  EK  K E    L+
Sbjct:   13 LDKDELCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLA--KRKLIEENREKRRKDELQKTLV 121

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BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|21264476|sp|Q09565.2|NHR20_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-20)

HSP 1 Score: 81.2629 bits (199), Expect = 3.582e-15
Identity = 45/132 (34.09%), Postives = 67/132 (50.76%), Query Frame = 0

Query:   25 EESLEGGEVVLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAM----EKHPKTERHPALMSMSGDK 152
            +E   GG   +  T +C +C+ P     H+G+ +C +C AFFRRT   + N +F CK    C + H+LR  CR CR++KC++ GM+   V     + +R  K + KK M    E   K E        SGD+
Sbjct:    3 QERSSGGYSGIPPTSKCLVCEHPDGGSAHFGSTSCLACAAFFRRTV--SLNIQFQCKKDKNCVIFHELRMICRACRFDKCVKAGMRRECV-----QKRRSNKKIPKKHMNMLREDQIKMEYDECKFECSGDQ 127

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BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|6093482|sp|Q18192.2|NHR31_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-31)

HSP 1 Score: 81.6481 bits (200), Expect = 4.036e-15
Identity = 45/123 (36.59%), Postives = 62/123 (50.41%), Query Frame = 0

Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVL-----TEEEKVKRFKKSLTKKAMEKHPKTERHPALMSMSGDKDLSRAV 158
            C +C D  I  LHYG + C+ CK FFRRT  G    ++ C+ S  C V    R  CR CR+++C+Q GM P  V      T ++KV R KK    + +  H        +M + GD D SR +
Sbjct:   82 CAVCGD-GIAKLHYGVLACYGCKGFFRRTLTGKY--RYACRFSNNCIVDKFQRNSCRYCRFQRCIQAGMDPKAVRPDRDQTGKQKVPRIKKKQIDEELLNH--------MMRLQGD-DWSRKL 192

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BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|10720139|sp|Q9XTJ4.1|NHR3_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-3)

HSP 1 Score: 80.8777 bits (198), Expect = 4.639e-15
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 0

Query:   12 PGTSSGDFALRDPE--ESLEGGEVVLEATEE--CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFK 125
            PG +    +L  PE  E    GE  ++  E   C +C D +    HYG + CF CK FFRRT +   N  +VC+ S +C +    R  CR CR++KCL+VGM+P  +  + +K  R K
Sbjct:   20 PGQTFSMESLLKPELGEYSPSGENGIDGEESTICSVCCDEASGR-HYGVVACFGCKGFFRRTVRAGKN--YVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKTGRQK 134

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BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|14917017|sp|P41829.3|NHR6_CAEEL (RecName: Full=Nuclear hormone receptor family member nhr-6; AltName: Full=Nuclear receptor subfamily 4 group A member 5; AltName: Full=Steroid hormone receptor family member cnr8)

HSP 1 Score: 81.2629 bits (199), Expect = 6.629e-15
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 0

Query:   31 GEVVLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLV 114
             E  L+A + C +C D ++  LHYGA TC  CK FF+RT Q N+  K+ C  +  C +  + R +C+ CRY+KCL+VGM   +V
Sbjct:  258 SETALDADKMCAVCNDRAVC-LHYGARTCEGCKGFFKRTVQKNS--KYTCAGNKTCPIDKRYRSRCQYCRYQKCLEVGMVKEIV 338

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BLAST of nuclear receptor 1 vs. SwissProt
Match: gi|13431919|sp|Q9W6N4.1|THA_HIPHI (RecName: Full=Thyroid hormone receptor alpha; AltName: Full=Nuclear receptor subfamily 1 group A member 1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.276e-15
Identity = 42/106 (39.62%), Postives = 60/106 (56.60%), Query Frame = 0

Query:   35 LEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEKHPKTE 140
            LE  E C +C D +  + HY  ITC  CK FFRRT Q N +  + CK  G C +    R +C+ CR++KC+ VGM   LVL + ++V   K+ L ++  EK  + E
Sbjct:   53 LEKDEPCVVCGDKATGY-HYRCITCEGCKGFFRRTIQKNLHPAYSCKYEGCCIIDKITRNQCQLCRFKKCISVGMAMDLVLDDSKRVA--KRRLIEENREKRKREE 155

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BLAST of nuclear receptor 1 vs. nr
Match: gi|657600358|gb|AID52840.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 336.265 bits (861), Expect = 3.733e-105
Identity = 160/260 (61.54%), Postives = 211/260 (81.15%), Query Frame = 0

Query:  289 ITESEVLLLQKLQHIHDSNYRSVAFGEDLIKSLVMSSAFGVPLSPSHTMMAYRLMIQRVTKVAQGLDEFTELPVEDQTMLLKSNADLMVSLKGAGFFDNKNRGIDQILYTLGIDDMDVAKRMVMTTSKTFGCMMNRIDYKSYNSLQDLTNQDMEQRYQWLLGQVAEVTTLFPSLTKLMTFVVLFLPPEDGVLKDGVRVCRMQKWLLNLAHKLVISQYSPEIGADLSMKITKICDYLKEITIIKRNRPL---IAQVDENSP 545
            ITE EVLLLQKL++IHD NY+SVAFGE+L+K+LVM+SAFG+PL+PS TMMAYRLMIQRVTKVAQG DEF +LP+EDQT LLKSNADLMVSLKGA FFD +N GIDQIL+++G+DD+++AKRM+M+TSKT GC MNRIDYKSYN++Q+L +   E+RYQWLL Q+ +V T FPSLTK++T+VVL L PED  L    +V  MQ  ++NL  K++ +Q++ E+  ++  ++T I DYL+E+ ++K+ RPL   + Q  +NSP
Sbjct:  302 ITEDEVLLLQKLEYIHDHNYQSVAFGEELVKALVMTSAFGIPLTPSQTMMAYRLMIQRVTKVAQGFDEFRDLPLEDQTTLLKSNADLMVSLKGAVFFDKRNMGIDQILFSMGLDDIEMAKRMIMSTSKTAGCKMNRIDYKSYNTIQELNDTPDEERYQWLLAQIGDVITSFPSLTKVLTYVVL-LCPEDCQLIQRDKVQSMQYTIMNLTRKMIFAQHNYEVATNIYGRVTNIIDYLRELMVLKKKRPLTNPVHQATDNSP 560

HSP 2 Score: 194.897 bits (494), Expect = 1.672e-51
Identity = 86/115 (74.78%), Postives = 103/115 (89.57%), Query Frame = 0

Query:   21 LRDPEESLEGGEVVLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEK 135
            L D    +E  +V +E TEECQIC+DP+I+HLHYGAITCFSCKAFFRRTSQ  A +KF+CK++GECNVLHKLRKKCRKCRYEKC++VGMKPSLVL++EEK+KRFKKSL+KKAM+K
Sbjct:    9 LDDGTSGMETEDVSMEPTEECQICQDPAIRHLHYGAITCFSCKAFFRRTSQSKAYQKFMCKSTGECNVLHKLRKKCRKCRYEKCIRVGMKPSLVLSDEEKIKRFKKSLSKKAMDK 123

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BLAST of nuclear receptor 1 vs. nr
Match: gi|657600356|gb|AID52839.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 253.832 bits (647), Expect = 1.812e-72
Identity = 127/269 (47.21%), Postives = 184/269 (68.40%), Query Frame = 0

Query:  278 SLALDVDPGLAITESEVLLLQKLQHIHDSNYRSVAFGEDLIKSLVMSSAFGVPLSPSHTMMAYRLMIQRVTKVAQGLDEFTELPVEDQTMLLKSNADLMVSLKGAGFFDNKNRGIDQILYTLGIDDMDVAKRMVMTTSKTFGCMMNRIDYKSYNSLQDLTNQDMEQRYQWLLGQVAEVTTLFPSLTKLMTFVVLFLPPEDGVLKDGVRVCRMQKWLLNLAHKLVISQYSPEIGADLSMKITKICDYLKEITIIKRNRPLIAQVDENSPQ 546
            S  + ++P + ++E E++ +++L + HD  YRSVAFGE+LIK LVM S FG+PLSP+  M AYRLMIQRVTKVAQG + F  L    Q  LLK+NADLMVSL+G  FFD K +GIDQIL++LG+DD+D+AKRM+MTT K  G  + RI+YK+YNS+Q+L + D E RY  LL +V  V +L P L  +M +V+L L P+   L+D  +V  +Q+ ++++  +L+ SQY   I  ++  ++      L+E+T+IKR RPL   + ++ P 
Sbjct:  362 SPGIPLEPQMTVSEDEIIQIRRLSYEHDKFYRSVAFGEELIKELVMCSVFGLPLSPNQAMTAYRLMIQRVTKVAQGFEPFNRLDRHAQKALLKTNADLMVSLRGGVFFDEKKKGIDQILFSLGVDDVDLAKRMLMTTLKATGS-LGRIEYKNYNSIQELGDNDTEHRYNALLSRVGSVISLVPELVNVMAYVLL-LCPDYCELEDRRKVEGLQQMMIHMTKRLLESQYPTHIAMNVFPQVLSCVSDLRELTLIKRKRPLAKPITKSPPH 628

HSP 2 Score: 132.88 bits (333), Expect = 4.660e-29
Identity = 56/131 (42.75%), Postives = 87/131 (66.41%), Query Frame = 0

Query:    7 GGASFPG---TSSGDFALRDPEESLEGGEVVLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAME 134
            GG S PG   +   D  +    +  +    ++  TE+C++C +P+ +H+HYG++TCFSC+AFFRR+ Q  A   + C+  G+C ++ K RK C+KCRYE+CL  GMKP+ VL+EEE+ +RF+K+  KKA +
Sbjct:   51 GGFSDPGEGPSEQNDVRMHSSGKKCKKENPLISDTEKCRVCGEPAARHVHYGSVTCFSCRAFFRRSIQNKAWNNYSCRRQGQCEIMLKSRKNCQKCRYEECLSAGMKPTWVLSEEERSRRFRKTREKKARQ 181

[Close]

BLAST of nuclear receptor 1 vs. nr
Match: gi|1325258266|ref|XP_023325470.1| (uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258271|ref|XP_023325479.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258277|ref|XP_023325484.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258282|ref|XP_023325492.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258289|ref|XP_023325500.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258292|ref|XP_023325508.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258296|ref|XP_023325515.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258300|ref|XP_023325523.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258306|ref|XP_023325531.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258311|ref|XP_023325539.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258315|ref|XP_023325547.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258319|ref|XP_023325554.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258329|ref|XP_023325561.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258334|ref|XP_023325570.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258338|ref|XP_023325578.1| uncharacterized protein LOC111699122 [Eurytemora affinis] >gi|1325258342|ref|XP_023325585.1| uncharacterized protein LOC111699122 [Eurytemora affinis])

HSP 1 Score: 146.747 bits (369), Expect = 8.859e-34
Identity = 84/256 (32.81%), Postives = 142/256 (55.47%), Query Frame = 0

Query:  282 DVDPGLAITESEVLLLQKLQHIHDSNYRSVAFGEDLIKSLVMSSAFGVPLSPSHTMMAYRLMIQRVTKVAQGLDEFTELPVEDQTMLLKSNADLMVSLKGAGFFDNKNRGIDQILYTLGIDDMDVAKRMVMTTSKTFGCMMNRIDYKSYNSLQDLTNQDMEQRYQWLLGQVAEVTTLFPSLTKLMTFVVLFLPPEDGVLKDGVRVCRMQKWLLNLAHKLVISQYSPEIGADLSM-KITKICDYLKEITIIKRNRPL 536
            D  P +  T  E  +L+ +   H+  YRSV FGE+LIK ++  S F +P+S    +  YRL+++R+T++A   + F +L  EDQ  LLK NA+L+VSL+GA FFD++  G  Q++ ++G DD+   + M     +     M  IDYK++NS+Q +     E RY +L  +V +V     +++ L+T+ VLF  P+   L +   V R Q   L + ++ + S++ P   A L +  +  +   ++E+  IK  R +
Sbjct:  425 DPQPEIIFTPDEAEILKNVVESHNERYRSVNFGEELIKEMIFCSMFSIPVSTQAAITGYRLIVERITRIANHQEAFKQLSNEDQGALLKENANLLVSLRGAIFFDSQKNGAQQVMLSMGEDDIQTIENMFSKLLRED--TMKHIDYKTFNSIQAIGLSPKEDRYNYLQEKVGKVLND-ETISILLTYTVLF-SPDFCSLTNSREVYRTQSMYLKMLYRYIYSKH-PRHAARLKLANVLDVITCIREMAEIKELRAI 675

HSP 2 Score: 121.709 bits (304), Expect = 1.995e-25
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 0

Query:   34 VLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKK 126
            +L  TE+C+IC +P+ KH+HYGA+TCFSC+AFFRR+ Q      + C+ S  C +  + RK C+ CRY+KCL VGMK + VL+EEE+ +RF+K
Sbjct:   34 LLSPTEKCKICNEPAAKHIHYGAMTCFSCRAFFRRSIQNKTANSYTCRRSQNCEINLRTRKNCQFCRYQKCLSVGMKTNWVLSEEERQRRFRK 126

[Close]

BLAST of nuclear receptor 1 vs. nr
Match: gi|657600352|gb|AID52837.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 122.865 bits (307), Expect = 1.973e-26
Identity = 76/241 (31.54%), Postives = 129/241 (53.53%), Query Frame = 0

Query:  296 LLQKLQHIHDSNYRSVAFGEDLIKSLVMSSAFGVPLSPSHTMMAYRLMIQRVTKVAQGLDEFTELPVEDQTMLLKSNADLMVSLKGAGFFDNKNRGIDQILYTLGIDDMDVAKRMVMTTSKTFGCMMNRIDYKSYNSLQDLTNQDMEQRYQWLLGQVAEVTTLFPSLTKLMTFVVLFLPPEDGVLKDG--VRVCRMQKWLLNLAHKLVISQYSPEIGADLSMKITKICDYLKEITIIKRNR 534
             +QK+  I+D  + SV+ GE +IK +++SS + VP+S S ++ AYRLM+ RVTK+A   D F  LP++    LLK NAD MV + GA FF       DQI  +LG +D + +  ++  + K+       I Y ++NS+Q   +QD+E+ +   + ++  +    P++ K+ +FVVL L  E   L  G    +   Q  LL++  + +   Y P +   +   + K    L+ ++I+   R
Sbjct:  212 FIQKITCIYDQQFLSVSLGEVIIKEMIVSSLYDVPISVSSSLSAYRLMVSRVTKIANSFDTFFNLPIQTGMALLKKNADPMVLVNGATFFSES--ASDQIQVSLGAEDKEASMLLIDRSEKSIKS-AKAITYWNWNSIQCQHDQDVEEMFSQNMERLGNLLDHNPTILKVFSFVVL-LSTEGVELDPGSLTEIAGCQLALLHVLERYLHRLYGPTMAGSIFGSLVKAMSDLRSMSIVNATR 448

HSP 2 Score: 114.39 bits (285), Expect = 1.562e-23
Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = 0

Query:   35 LEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKK 126
            +E +E+C++CK+P+ +HLHYGAI CFSCKAFFRR  Q N  + F C   G+C +    RK C+KCR+E CL+VGM  + VL++EE++ R  +
Sbjct:   30 VEFSEKCRVCKEPATRHLHYGAIVCFSCKAFFRRAIQNNVYKFFNCSVDGKCEMNSISRKHCQKCRWEACLKVGMNANWVLSKEERLDRLNR 121

[Close]

BLAST of nuclear receptor 1 vs. nr
Match: gi|657600354|gb|AID52838.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 110.923 bits (276), Expect = 5.041e-22
Identity = 124/532 (23.31%), Postives = 215/532 (40.41%), Query Frame = 0

Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEKHPKTERHPALMSMSG---DKDLSRAVSSSSSMSY----------YEDPHEGRPPVHPGLMGRDKTPLDHIWGMSQRNGYPSYAKPAVTMADGIGNPYTRYKMVPKSIHLRSSYPGPSSIPV-----------------------EAPPPGHPGYEEDIWNLHEERGQPVSNLRMENLQSLALDV------DPGLAITESEVLLLQKLQHIHDSNYRSVAFGEDLIKSLVMSSAFGVPLSPSHTMMAYRLMIQRVTKVAQGLDEFTELPVEDQTMLLKSNADLMVSLKGAGFFDNKNRGIDQILYTLGIDDMDVAKRMVMTTSKTFGCMMNRIDYKSYNSLQDLTNQDMEQRYQWLLGQVAEVTTLFPSLTKLMTFVVLFLPPEDGVLKDGVRVCRMQKWLLNLAHKLVISQYSPEIGADLSMKITKICDYLKEITII 530
            C++C D +  H+HYGAI C+SC+AFFRR    NAN  + C  S  C +    RK C+ CR++KC+ +GM+ S V+TEE+K ++ +K+  K+      K  +    +S SG   D D     +  SS  Y          +  PH+ +   H                    + Y S   P ++   G  +  + +   P S    S YP  S  P                        E+P     GY+  +     E   P S + M+   S  +D        P L  T  E  L++ + +   +  +S+    +++  ++ ++  G  +  S  +  Y   ++R+ +    LD F    + DQ  LL  N D++V+L+ A           QI +  G   ++       T+   F C   R++YK         ++  E ++  L+  +  +  +  + T LM  +VLF       LKD  R  + Q++   L ++ + S    +    L  K   +   L+E++ I
Sbjct:   62 CKVCGDVANDHIHYGAIACYSCRAFFRRGV--NANAPYYCSQSKSCPITKHTRKHCQYCRFQKCMAIGMRASWVMTEEDKQEKKEKARLKRV----SKVGKDSGSLSESGLVADYDEHGGPTVCSSPPYGSRNHFSPESHHAPHQSQVYCH-------------------EDQYHSSEDPQMSYCSGSRD--SLHSPTPSSAF--SEYPAASHTPPFDCSTGGQNALLGMDRCASGEGGESPINDAEGYQSSM-----EYVSPASPIEMKPDISFFVDTANIIRDQPILPFTSEETFLVENIINTEVATTQSIPVNPEVLMGMIEAAKNGTVIPYSALVEGYTTCMRRIIQFVSKLDFFQSFVLPDQRDLLLHNTDMIVNLRSARLLRPGINLQAQINHATGGPSLE----NTTTSMDLFQC-PERLEYKQIFQSPWACDEKHEAQFASLMENLFHL-EMDRTTTTLMAMIVLF-STSYAELKDSHRAVQNQEFFTQLLYRYLGSMIGRKNAIKLLPKYMHLISQLEEMSQI 552

[Close]

BLAST of nuclear receptor 1 vs. nr
Match: gi|1325302227|ref|XP_023332665.1| (uncharacterized protein LOC111704608, partial [Eurytemora affinis])

HSP 1 Score: 104.76 bits (260), Expect = 1.072e-19
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 0

Query:   40 ECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKK 131
            +C +C D +I H+HYG I C+SCKAFFRR  Q   ++K++CK  G C V    R+ C+KCR+EKC ++GM  + VL++E+  +RF KS  K+
Sbjct:  873 DCNVCGDKAIAHMHYGGICCYSCKAFFRRAVQSGKDKKYLCKGEGHCPVSVHNRRGCQKCRFEKCQEIGMVSTWVLSDEQCEQRFGKSKLKR 964

[Close]

BLAST of nuclear receptor 1 vs. nr
Match: gi|657600348|gb|AID52835.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 100.138 bits (248), Expect = 9.843e-19
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 0

Query:   40 ECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKR 123
            EC +C +PS KH +YGA  CFSC+AFFRR++  +   +F CK+S  C +  K  K C+ CRY+KCL  GMK + VL +EE+V+R
Sbjct:  107 ECPVCDNPSGKHSYYGAQVCFSCRAFFRRSTINSTFTEFQCKDSKTCGINSKSWKSCKFCRYQKCLSAGMKSTWVLNDEERVQR 190

[Close]

BLAST of nuclear receptor 1 vs. nr
Match: gi|1325316701|ref|XP_023340074.1| (uncharacterized protein LOC111710243 [Eurytemora affinis])

HSP 1 Score: 100.138 bits (248), Expect = 1.107e-18
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 0

Query:   32 EVVLEATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKN-SGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRF 124
            E   ++T +C +CKD +I H HYG + C+SCKAFFRR    +   K+ C+N S  C+V    R+ C+ CRY KC+  GMKP LVL++E+  +RF
Sbjct:  265 ESANKSTIDCPVCKDVAIAHFHYGGMCCYSCKAFFRRVVNTSKANKYKCRNGSNLCDVSLGNRRSCQACRYRKCVSAGMKPGLVLSDEQCTRRF 358

[Close]

BLAST of nuclear receptor 1 vs. nr
Match: gi|657600346|gb|AID52834.1| (nuclear receptor [Tigriopus japonicus])

HSP 1 Score: 97.8265 bits (242), Expect = 6.853e-18
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 0

Query:   37 ATEECQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEKFVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKKSLTKKAMEKHPKTERHPALMS 147
            A   C +C +PS KHL+YGA  C SC+AFFRR++  +A E+F CK   +C +  K  K C+ CR++KCL  GM+P+ V+ +EE+ +R        A  K  +T+R   ++S
Sbjct:  111 AAFHCPVCGNPSGKHLYYGAQVCSSCRAFFRRSTINSAAEEFRCKADKKCGIDSKSWKSCKFCRFQKCLSAGMRPNWVMNDEERTQR-------NAKRKRTRTKRVDNVVS 214

[Close]

BLAST of nuclear receptor 1 vs. nr
Match: gi|1325280017|ref|XP_023324670.1| (uncharacterized protein LOC111698547 [Eurytemora affinis])

HSP 1 Score: 97.8265 bits (242), Expect = 8.188e-18
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 0

Query:   41 CQICKDPSIKHLHYGAITCFSCKAFFRRTSQGNANEK--FVCKNSGECNVLHKLRKKCRKCRYEKCLQVGMKPSLVLTEEEKVKRFKK 126
            C+IC D +++H+HYG   CFSCKAFFRR        K  F CK    C +  K RK C+ CR++KC+  GM PS VL+++++ KRFKK
Sbjct:   41 CRICGDGAVRHVHYGGHCCFSCKAFFRRAVNWQTKNKRTFQCKFESGCEINIKNRKTCQSCRFQKCITTGMNPSWVLSDDQRKKRFKK 128

The following BLAST results are available for this feature:

BLAST of nuclear receptor 1 vs. L. salmonis genes
BLAST of nuclear receptor 1 vs. SwissProt
BLAST of nuclear receptor 1 vs. nr

BLAST of nuclear receptor 1 vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides)
Total hits: 22


Match Name	E-value	Identity	Description
EMLSAG00000012651	3.863e-20	48.19	supercontig:LSalAtl2s:LSalAtl2s959:3535:5114:-1 ge...	[more]
EMLSAG00000004174	3.469e-19	45.56	supercontig:LSalAtl2s:LSalAtl2s220:369739:371271:-...	[more]
EMLSAG00000010267	2.302e-17	43.18	supercontig:LSalAtl2s:LSalAtl2s680:110406:112508:1...	[more]
EMLSAG00000011907	9.330e-17	43.18	supercontig:LSalAtl2s:LSalAtl2s83:639505:641027:-1...	[more]
EMLSAG00000008261	4.834e-16	45.33	supercontig:LSalAtl2s:LSalAtl2s49:858199:860758:1 ...	[more]
EMLSAG00000013004	8.501e-14	42.05	supercontig:LSalAtl2s:LSalAtl2s98:942409:953748:1 ...	[more]
EMLSAG00000004451	1.282e-13	47.14	supercontig:LSalAtl2s:LSalAtl2s231:945915:949068:1...	[more]
EMLSAG00000008902	1.308e-13	37.82	supercontig:LSalAtl2s:LSalAtl2s554:572309:581835:1...	[more]
EMLSAG00000008543	1.632e-13	46.38	supercontig:LSalAtl2s:LSalAtl2s527:163002:172818:1...	[more]
EMLSAG00000005090	3.487e-13	36.78	supercontig:LSalAtl2s:LSalAtl2s269:306853:308464:-...	[more]

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BLAST of nuclear receptor 1 vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|10720385\|sp\|Q20765.2\|NHR7_CAEEL	4.452e-16	45.05	RecName: Full=Nuclear hormone receptor family memb...	[more]
gi\|6094474\|sp\|Q91279.1\|THB_PAROL	6.910e-16	37.74	RecName: Full=Thyroid hormone receptor beta; AltNa...	[more]
gi\|215273960\|sp\|Q9PVE4.2\|THB_DANRE	6.910e-16	37.74	RecName: Full=Thyroid hormone receptor beta; Short...	[more]
gi\|135713\|sp\|P18117.1\|THBA_XENLA	1.590e-15	37.50	RecName: Full=Thyroid hormone receptor beta-A; Sho...	[more]
gi\|1729929\|sp\|Q02965.2\|THB_LITCT	2.015e-15	37.50	RecName: Full=Thyroid hormone receptor beta; AltNa...	[more]
gi\|21264476\|sp\|Q09565.2\|NHR20_CAEEL	3.582e-15	34.09	RecName: Full=Nuclear hormone receptor family memb...	[more]
gi\|6093482\|sp\|Q18192.2\|NHR31_CAEEL	4.036e-15	36.59	RecName: Full=Nuclear hormone receptor family memb...	[more]
gi\|10720139\|sp\|Q9XTJ4.1\|NHR3_CAEEL	4.639e-15	37.29	RecName: Full=Nuclear hormone receptor family memb...	[more]
gi\|14917017\|sp\|P41829.3\|NHR6_CAEEL	6.629e-15	42.86	RecName: Full=Nuclear hormone receptor family memb...	[more]
gi\|13431919\|sp\|Q9W6N4.1\|THA_HIPHI	9.276e-15	39.62	RecName: Full=Thyroid hormone receptor alpha; AltN...	[more]

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BLAST of nuclear receptor 1 vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|657600358\|gb\|AID52840.1\|	3.733e-105	61.54	nuclear receptor [Tigriopus japonicus]	[more]
gi\|657600356\|gb\|AID52839.1\|	1.812e-72	47.21	nuclear receptor [Tigriopus japonicus]	[more]
gi\|1325258266\|ref\|XP_023325470.1\|	8.859e-34	32.81	uncharacterized protein LOC111699122 [Eurytemora a...	[more]
gi\|657600352\|gb\|AID52837.1\|	1.973e-26	31.54	nuclear receptor [Tigriopus japonicus]	[more]
gi\|657600354\|gb\|AID52838.1\|	5.041e-22	23.31	nuclear receptor [Tigriopus japonicus]	[more]
gi\|1325302227\|ref\|XP_023332665.1\|	1.072e-19	46.74	uncharacterized protein LOC111704608, partial [Eur...	[more]
gi\|657600348\|gb\|AID52835.1\|	9.843e-19	50.00	nuclear receptor [Tigriopus japonicus]	[more]
gi\|1325316701\|ref\|XP_023340074.1\|	1.107e-18	45.74	uncharacterized protein LOC111710243 [Eurytemora a...	[more]
gi\|657600346\|gb\|AID52834.1\|	6.853e-18	40.54	nuclear receptor [Tigriopus japonicus]	[more]
gi\|1325280017\|ref\|XP_023324670.1\|	8.188e-18	47.73	uncharacterized protein LOC111698547 [Eurytemora a...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold59_size442576	supercontig	scaffold59_size442576:86496..88151 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
maker	2018-02-12 .496401
T. kinsejongensis vs L. Salmonis peptides	2018-04-19
T. kingejongensis peptided Blastp vs. SwissProt	2018-04-19
T. kingsejongensis proteins Blastp vs. NR	2018-05-15

Properties


Property Name	Value
Note	F:thyroid hormone receptor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
snap_masked-scaffold59_size442576-processed-gene-0.17-mRNA-1	snap_masked-scaffold59_size442576-processed-gene-0.17-mRNA-1	Tigriopus kingsejongensis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at scaffold59_size442576:86496..88151-

gene from alignment at scaffold59_size442576:86496..88151-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>snap_masked-scaffold59_size442576-processed-gene-0.17 ID=snap_masked-scaffold59_size442576-processed-gene-0.17|Name=nuclear receptor 1|organism=Tigriopus kingsejongensis|type=gene|length=1656bp|location=Sequence derived from alignment at scaffold59_size442576:86496..88151- (Tigriopus kingsejongensis)
ATGTCATTTGAGGAGAGCGGTGGTGCCTCATTTCCAGGGACTTCCTCCGG
GGATTTCGCCTTGAGGGATCCGGAGGAGAGTTTGGAGGGCGGCGAAGTTG
TTTTGGAAGCCACGGAGGAATGTCAGATTTGCAAGGATCCATCCATTAAG
CACCTTCACTATGGAGCCATCACTTGCTTCTCGTGCAAGGCCTTCTTTCG
AAGGACCAGTCAGGGCAATGCCAATGAGAAATTTGTGTGCAAGAACAGTG
GTGAGTGCAATGTGCTCCACAAGCTGAGGAAGAAATGTCGCAAGTGTCGC
TACGAAAAGTGCTTGCAAGTGGGCATGAAGCCCTCCTTGGTCTTGACCGA
GGAGGAGAAAGTGAAGCGCTTCAAGAAGTCCTTGACCAAGAAGGCCATGG
AGAAGCATCCCAAAACCGAGAGGCACCCGGCCTTGATGTCCATGAGTGGT
GACAAGGATTTGAGCCGAGCCGTTTCGTCCAGTAGTTCAATGTCCTACTA
TGAGGACCCTCACGAGGGCCGGCCGCCCGTGCATCCGGGATTGATGGGGC
GGGACAAGACGCCTCTGGATCATATCTGGGGCATGTCCCAGCGGAACGGC
TATCCCTCGTATGCCAAGCCGGCCGTGACCATGGCCGACGGCATTGGCAA
CCCCTACACCCGTTATAAAATGGTCCCCAAGTCCATCCACTTGCGATCCT
CCTACCCGGGTCCCAGTTCCATTCCCGTGGAGGCTCCTCCGCCTGGACAC
CCGGGCTATGAGGAGGACATTTGGAACCTCCACGAAGAGCGAGGCCAGCC
CGTTAGCAATCTCAGGATGGAGAACCTTCAATCCCTGGCCCTCGACGTTG
ACCCTGGCCTGGCCATCACCGAGTCGGAGGTGCTCCTCCTCCAGAAGCTG
CAGCATATCCACGACAGTAATTACCGATCCGTGGCATTTGGCGAGGATCT
CATCAAAAGTCTGGTCATGTCATCGGCCTTTGGCGTCCCCCTCTCACCTT
CTCACACTATGATGGCCTATCGACTCATGATTCAGCGAGTCACGAAGGTG
GCCCAAGGCCTGGACGAGTTCACGGAGTTGCCCGTGGAAGACCAGACCAT
GCTCCTCAAGAGCAATGCCGACCTCATGGTGAGCTTGAAGGGGGCCGGCT
TCTTCGACAACAAAAATCGCGGGATCGATCAAATCCTGTACACCCTCGGG
ATTGATGACATGGACGTGGCCAAGCGGATGGTGATGACCACGTCCAAGAC
CTTCGGCTGCATGATGAACCGCATCGACTACAAAAGCTATAACTCCCTGC
AAGATCTGACCAACCAGGACATGGAGCAACGCTACCAATGGCTCCTGGGT
CAAGTGGCCGAGGTCACGACGCTCTTTCCATCCCTCACCAAACTCATGAC
CTTCGTGGTCCTCTTCCTACCTCCCGAGGATGGAGTGCTGAAAGATGGAG
TTCGGGTTTGTCGCATGCAGAAATGGCTGCTCAACTTGGCCCATAAGCTG
GTGATCAGCCAATATTCGCCGGAGATTGGAGCAGACCTTTCCATGAAAAT
CACCAAAATATGTGACTACCTCAAGGAGATAACTATAATCAAACGTAACC
GACCATTAATTGCCCAAGTCGACGAAAATTCTCCTCAACCGGCCGGAGTC
AACTGA

Synonyms

The feature 'nuclear receptor 1' has the following synonyms


Synonym
Tk11668

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