EMLSAG00000000142, EMLSAG00000000142-682908 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000142
Unique NameEMLSAG00000000142-682908
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592776582|gb|GAXK01177986.1| (TSA: Calanus finmarchicus comp14511_c2_seq14 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.380e+0
Identity = 14/52 (26.92%), Postives = 21/52 (40.38%), Query Frame = 0 
Query:    5 FCAPGCGTGYDN----EPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLK 52
               P     Y N    EPQ+  +  + WP    NP  D +W +A+     +K
Sbjct:   94 LLTPLASLKYPNSPQYEPQEFLMTQYFWPFSSPNPITDMSWFKALALVRSVK 249
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BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592776590|gb|GAXK01177978.1| (TSA: Calanus finmarchicus comp14511_c2_seq6 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.635e+0
Identity = 14/52 (26.92%), Postives = 21/52 (40.38%), Query Frame = 0 
Query:    5 FCAPGCGTGYDN----EPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLK 52
               P     Y N    EPQ+  +  + WP    NP  D +W +A+     +K
Sbjct:  373 LLTPLASLKYPNSPQYEPQEFLMTQYFWPFSSPNPITDMSWFKALALVRSVK 528
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BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592776576|gb|GAXK01177992.1| (TSA: Calanus finmarchicus comp14511_c5_seq5 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.027e+0
Identity = 14/52 (26.92%), Postives = 21/52 (40.38%), Query Frame = 0 
Query:    5 FCAPGCGTGYDN----EPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLK 52
               P     Y N    EPQ+  +  + WP    NP  D +W +A+     +K
Sbjct:  235 LLTPLASLKYPNSPQYEPQEFLMTQYFWPFSSPNPITDMSWFKALALVRSVK 390
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BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592776577|gb|GAXK01177991.1| (TSA: Calanus finmarchicus comp14511_c5_seq4 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.040e+0
Identity = 14/52 (26.92%), Postives = 21/52 (40.38%), Query Frame = 0 
Query:    5 FCAPGCGTGYDN----EPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLK 52
               P     Y N    EPQ+  +  + WP    NP  D +W +A+     +K
Sbjct:  235 LLTPLASLKYPNSPQYEPQEFLMTQYFWPFSSPNPITDMSWFKALALVRSVK 390
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BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592776587|gb|GAXK01177981.1| (TSA: Calanus finmarchicus comp14511_c2_seq9 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.220e+0
Identity = 11/36 (30.56%), Postives = 18/36 (50.00%), Query Frame = 0 
Query:   17 EPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLK 52
            EPQ+  +  + WP    NP  D +W +A+     +K
Sbjct:  373 EPQEFLMTQYFWPFSSPNPITDMSWFKALALVRSVK 480
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BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592750899|gb|GAXK01203514.1| (TSA: Calanus finmarchicus comp3072168_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.459e+0
Identity = 22/69 (31.88%), Postives = 27/69 (39.13%), Query Frame = 0 
Query:   25 IHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICESKRSQTLGKALKKRCD 93
            +HLW        L   W R   R TD   MD          S+HF    F+C S  SQ+  K L  + D
Sbjct:  957 LHLW--------LAPDWGRTGGRGTDHSMMD*GEDFLNLKHSVHFVHESFLCVSS-SQSFDKILSDKYD 1136
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BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592750900|gb|GAXK01203513.1| (TSA: Calanus finmarchicus comp3072168_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.461e+0
Identity = 22/69 (31.88%), Postives = 27/69 (39.13%), Query Frame = 0 
Query:   25 IHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICESKRSQTLGKALKKRCD 93
            +HLW        L   W R   R TD   MD          S+HF    F+C S  SQ+  K L  + D
Sbjct:  957 LHLW--------LAPDWGRTGGRGTDHSMMD*GEDFLNLKHSVHFVHESFLCVSS-SQSFDKILSDKYD 1136
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BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592908187|gb|GAXK01050188.1| (TSA: Calanus finmarchicus comp30162_c3_seq7 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.600e+0
Identity = 16/45 (35.56%), Postives = 25/45 (55.56%), Query Frame = 0 
Query:   18 PQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKST 62
            P  +G+KIH      R+P  +  + R++    DLK+ DQ+PS S 
Sbjct:  127 PSVNGLKIH------RHPA*NRVFDRSLISGNDLKQ*DQSPSFSN 243
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BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592908191|gb|GAXK01050184.1| (TSA: Calanus finmarchicus comp30162_c3_seq3 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.805e+0
Identity = 16/45 (35.56%), Postives = 25/45 (55.56%), Query Frame = 0 
Query:   18 PQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKST 62
            P  +G+KIH      R+P  +  + R++    DLK+ DQ+PS S 
Sbjct:  127 PSVNGLKIH------RHPA*NRVFDRSLISGNDLKQ*DQSPSFSN 243
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BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592908196|gb|GAXK01050179.1| (TSA: Calanus finmarchicus comp30162_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 6.415e+0
Identity = 16/44 (36.36%), Postives = 25/44 (56.82%), Query Frame = 0 
Query:   18 PQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKS 61
            P  +G+KIH      R+P  +  + R++    DLK+ DQ+PS S
Sbjct: 1384 PSVNGLKIH------RHPA*NRVFDRSLISGNDLKQWDQSPSFS 1497
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BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000000142 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1021:140193:141338:-1 gene:EMLSAG00000000142 transcript:EMLSAT00000000142 description:"snap-LSalAtl2s1021-processed-gene-0.80")

HSP 1 Score: 205.682 bits (522), Expect = 1.164e-69
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 
Query:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICESKRSQTLGKALKKRCDYFRS 97
            MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICESKRSQTLGKALKKRCDYFRS
Sbjct:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICESKRSQTLGKALKKRCDYFRS 97
[Close]
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000002611 (pep:novel supercontig:LSalAtl2s:LSalAtl2s151:424347:426407:1 gene:EMLSAG00000002611 transcript:EMLSAT00000002611 description:"augustus-LSalAtl2s151-processed-gene-4.1")

HSP 1 Score: 59.3066 bits (142), Expect = 1.434e-11
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 0 
Query:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICES 78
            M  K C P C +GYD +P  + + +H +P  + + G   AWLRAI R+++      APSK +++ SLHF++ DF+ ES
Sbjct:  138 MPNKCCVPKCTSGYDGKPSIARLSLHSFPLDKSSKG---AWLRAIPRDSN---GTWAPSKYSRVCSLHFHEDDFVYES 209
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BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000010046 (pep:novel supercontig:LSalAtl2s:LSalAtl2s661:385852:386678:-1 gene:EMLSAG00000010046 transcript:EMLSAT00000010046 description:"augustus-LSalAtl2s661-processed-gene-2.10")

HSP 1 Score: 52.373 bits (124), Expect = 9.892e-10
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0 
Query:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWP--NKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICES 78
            M  K  APGC  GYD+ P+ + V  H++P  N   N  L++ W  AI R+          +K+++L SLHF +SD+I  S
Sbjct:    1 MGWKCSAPGCRQGYDDTPKNTTVLFHIFPRFNVPPNLELESRWESAIPRQKTF-------TKNSRLCSLHFTESDYITHS 73
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BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000012721 (pep:novel supercontig:LSalAtl2s:LSalAtl2s965:308987:310501:-1 gene:EMLSAG00000012721 transcript:EMLSAT00000012721 description:"augustus-LSalAtl2s965-processed-gene-3.12")

HSP 1 Score: 47.7506 bits (112), Expect = 1.129e-7
Identity = 30/96 (31.25%), Postives = 49/96 (51.04%), Query Frame = 0 
Query:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICES-----KRSQTLGKALKKR 91
            M    C P C + Y    ++ GV +H++P   ++  +  AWL A++ +    K +  PS  +++ SLHF+D  F+ ES     K  QT  K L +R
Sbjct:    1 MPNNCCIPHCKSRYKGYLKRYGVTLHVFP---KDASIKDAWLHAVSSQM---KGEYEPSIYSRVCSLHFDDQSFVNESSDERRKYRQTSSKQLVRR 90
[Close]
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000012818 (pep:novel supercontig:LSalAtl2s:LSalAtl2s977:162868:163832:-1 gene:EMLSAG00000012818 transcript:EMLSAT00000012818 description:"snap-LSalAtl2s977-processed-gene-1.30")

HSP 1 Score: 42.743 bits (99), Expect = 5.167e-7
Identity = 19/50 (38.00%), Postives = 30/50 (60.00%), Query Frame = 0 
Query:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETD 50
            M  K C P C +GYD +P  + + +H +P  E + G+   WLRAI R+++
Sbjct:   12 MPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGV---WLRAIPRDSN 58
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000142 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000142 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592776582|gb|GAXK01177986.1|1.380e+026.92TSA: Calanus finmarchicus comp14511_c2_seq14 trans... [more]
gi|592776590|gb|GAXK01177978.1|1.635e+026.92TSA: Calanus finmarchicus comp14511_c2_seq6 transc... [more]
gi|592776576|gb|GAXK01177992.1|2.027e+026.92TSA: Calanus finmarchicus comp14511_c5_seq5 transc... [more]
gi|592776577|gb|GAXK01177991.1|2.040e+026.92TSA: Calanus finmarchicus comp14511_c5_seq4 transc... [more]
gi|592776587|gb|GAXK01177981.1|2.220e+030.56TSA: Calanus finmarchicus comp14511_c2_seq9 transc... [more]
gi|592750899|gb|GAXK01203514.1|4.459e+031.88TSA: Calanus finmarchicus comp3072168_c0_seq2 tran... [more]
gi|592750900|gb|GAXK01203513.1|4.461e+031.88TSA: Calanus finmarchicus comp3072168_c0_seq1 tran... [more]
gi|592908187|gb|GAXK01050188.1|4.600e+035.56TSA: Calanus finmarchicus comp30162_c3_seq7 transc... [more]
gi|592908191|gb|GAXK01050184.1|4.805e+035.56TSA: Calanus finmarchicus comp30162_c3_seq3 transc... [more]
gi|592908196|gb|GAXK01050179.1|6.415e+036.36TSA: Calanus finmarchicus comp30162_c0_seq1 transc... [more]

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BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000001421.164e-69100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1021:1401... [more]
EMLSAP000000026111.434e-1139.74pep:novel supercontig:LSalAtl2s:LSalAtl2s151:42434... [more]
EMLSAP000000100469.892e-1037.50pep:novel supercontig:LSalAtl2s:LSalAtl2s661:38585... [more]
EMLSAP000000127211.129e-731.25pep:novel supercontig:LSalAtl2s:LSalAtl2s965:30898... [more]
EMLSAP000000128185.167e-738.00pep:novel supercontig:LSalAtl2s:LSalAtl2s977:16286... [more]
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BLAST of EMLSAG00000000142 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000142 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000142 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000142 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1021supercontigLSalAtl2s1021:140193..141338 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1021-processed-gene-0.80
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000142 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000142EMLSAT00000000142-695989Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1021:140193..141338-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000142-682908 ID=EMLSAG00000000142-682908|Name=EMLSAG00000000142|organism=Lepeophtheirus salmonis|type=gene|length=1146bp|location=Sequence derived from alignment at LSalAtl2s1021:140193..141338- (Lepeophtheirus salmonis)
ATGGCCACTAAGTTTTGTGCTCCAGGGTGTGGAACGGGCTATGACAACGA
GCCACAACAGTCTGGTGTTAAGATCCATCTATGGCCAAACAAAGAGAGAA
ACCCCGGACTTGATACCGCCTGGCTGAGAGCCATTACAAGAGAAACAGAT
CTGAAGAAGATGGATCAGGCACCATCTAAAAGTACAAAGCTGCGTTCCCT
GCATTTCAACGACTCTGATTTCATCTGTGAGTCTAAAAGAAGTCAGACCC
TTGGCAAGGCTCTAAAGAAGAGGTAAGATAGCTGCTCACTTTTGATGCGT
ATGCTTATAACTTTACAGGTACCTCAAACCCGATATAGTATCATCCCTAT
GGCCAAACTGTCCCAACTACCTCTCAACTCCTAAAGCGTCATCAAGGCCA
ACTTAAGCTGCGAACAAGTCACGTAGGGCTCAACAGTTACAATNTGCTCA
CTTTTGATGCGTATGCTTATAACTTTACAGGTACCTCAAACCCGATATAG
TATCATCCCTATGGCCAAACTGTCCCAACTACCTCTCAACTCCTAAAGCG
TCATCAAGGCCAACTTAAGCTGCGAACAAGTCACGTAGGGCTCAACAGTT
CAATAACCTAAACAACACCTGGAATTTGAACTCTTGAATGAGGACTCTGG
AAGAACTTGGTCACAAATTGGCCAAGGAGACACTCCCCTCCTCATCACAA
AACCAAGTGTTGCCCTTTTGAAGCTATCCCATGATGAGAAATTGGGCCCC
CAAGTAGTAGCCAGCATCTAGTTTGAGACAGATATGTCATTCAAAATGAA
TCACTCTGGGTGTTGATTGACAAAAAGGTAGTGTCACACATCMCCTCAGA
AAGCAAAGTCAACACTGTGATTCAAGCCATCAATTTGTCTTCCTTTTTGG
GAGCAAAAGAAGAATTGAATCAAACAGAGACCTGGGAAGACATTCTCAAC
AAGTTAGTGAAGTTTCTCAACTCCTCAGAGATTGAACCTACACAAGTATT
CTGAGTCTTGTCAAATTCTGAGGTAAATAAGATATTTGTTAATTGTAAGC
TTCTTTATTTAGGTATTACTTATTTTTACAATATATTAATATCATTACAA
TATTTTACTTTTTTAAATTTTCAGGTGTGATTACTTCAGAAGTTAA
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