EMLSAG00000000304, EMLSAG00000000304-683070 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000304
Unique NameEMLSAG00000000304-683070
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000304 vs. L. salmonis peptides
Match: EMLSAP00000000304 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:4576:5080:-1 gene:EMLSAG00000000304 transcript:EMLSAT00000000304 description:"maker-LSalAtl2s1044-augustus-gene-0.32")

HSP 1 Score: 253.832 bits (647), Expect = 2.589e-87
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 
Query:    1 MLDSSVVDNLRKRLDSTSSEVNGLLIKLDKTRQLYEDQDKVLKKVEEEKNRLDKDLNDEIETLRRSKIKIKSSEDEKKKILSEKENEIQNLEKEIKNLMKKGIANQQSLEDNSKEIQNLRCDIAEKQNIIENLEIQV 137
            MLDSSVVDNLRKRLDSTSSEVNGLLIKLDKTRQLYEDQDKVLKKVEEEKNRLDKDLNDEIETLRRSKIKIKSSEDEKKKILSEKENEIQNLEKEIKNLMKKGIANQQSLEDNSKEIQNLRCDIAEKQNIIENLEIQV
Sbjct:    1 MLDSSVVDNLRKRLDSTSSEVNGLLIKLDKTRQLYEDQDKVLKKVEEEKNRLDKDLNDEIETLRRSKIKIKSSEDEKKKILSEKENEIQNLEKEIKNLMKKGIANQQSLEDNSKEIQNLRCDIAEKQNIIENLEIQV 137
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BLAST of EMLSAG00000000304 vs. L. salmonis peptides
Match: EMLSAP00000006390 (pep:novel supercontig:LSalAtl2s:LSalAtl2s350:207605:212969:1 gene:EMLSAG00000006390 transcript:EMLSAT00000006390 description:"maker-LSalAtl2s350-augustus-gene-2.6")

HSP 1 Score: 205.297 bits (521), Expect = 1.372e-61
Identity = 109/135 (80.74%), Postives = 125/135 (92.59%), Query Frame = 0 
Query:    3 DSSVVDNLRKRLDSTSSEVNGLLIKLDKTRQLYEDQDKVLKKVEEEKNRLDKDLNDEIETLRRSKIKIKSSEDEKKKILSEKENEIQNLEKEIKNLMKKGIANQQSLEDNSKEIQNLRCDIAEKQNIIENLEIQV 137
            D+SVVD LRKRLD+TSSEV+GLLIKL+KTRQLYEDQ K+LKKVEEEKNRL+KDLNDEIETLRRSKIKI+SSE EKK +LS+KE EIQ LEKEIKNL++KG+ANQQSLE NSKEI+ LR D +EKQNIIENLE+Q+
Sbjct:  801 DASVVDXLRKRLDTTSSEVDGLLIKLNKTRQLYEDQGKILKKVEEEKNRLEKDLNDEIETLRRSKIKIESSEHEKKNLLSDKEIEIQKLEKEIKNLIQKGVANQQSLEHNSKEIEILRSDASEKQNIIENLEVQI 935
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BLAST of EMLSAG00000000304 vs. L. salmonis peptides
Match: EMLSAP00000006900 (pep:novel supercontig:LSalAtl2s:LSalAtl2s390:414906:420715:1 gene:EMLSAG00000006900 transcript:EMLSAT00000006900 description:"augustus_masked-LSalAtl2s390-processed-gene-3.6")

HSP 1 Score: 90.1225 bits (222), Expect = 1.737e-21
Identity = 52/111 (46.85%), Postives = 86/111 (77.48%), Query Frame = 0 
Query:   13 RLDSTSSEVNGLLIKLDKTRQLYEDQDKVLKKVEEEKNRLDKDLNDEIETLRRSKIKIKSSEDEKKKILSEKENEIQNLEKEIKNLMKKGIANQQSLEDNSKEIQNLRCDI 123
            +L STS E+   + +LDK + + E+ +K LKK+ +E++R +KDLNDEIE+LR+SK+KIK+S+DEK K+LS+KE EI +L+KE+K+L++  +AN+Q +++ + E++ L   I
Sbjct:  211 KLSSTSEELKKTIKELDKYKIVNEELEKSLKKIHDERDRKEKDLNDEIESLRQSKVKIKASDDEKTKLLSDKELEISSLQKEVKHLIQTDVANRQMIDNQNSELKVLEVQI 321
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BLAST of EMLSAG00000000304 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold421_size176100-snap-gene-0.31 (protein:Tk10559 transcript:maker-scaffold421_size176100-snap-gene-0.31-mRNA-1 annotation:"golgin subfamily a member 4-like")

HSP 1 Score: 46.2098 bits (108), Expect = 7.822e-7
Identity = 38/118 (32.20%), Postives = 66/118 (55.93%), Query Frame = 0 
Query:   39 DKVLKKVEEEKNRLDKDLNDEIETLRRSKIKIKSSEDEKKKILSEKENEIQNLEKEIKNL-------------------MKKGIANQQSLEDNSKEIQNLRCDIAEKQNIIENLEIQV 137
            +K L+K E +K R++++LNDEIE L+++K K+K S D++ K    KE E+  LE+E+K+L                   M +   N+ S+     E+  LR ++ +K  +I+NLE+ +
Sbjct: 1013 EKNLRKAESDKERVERELNDEIEDLKQAKKKLKQSVDDQAKDAEAKEKEVTKLEREVKSLLQTNELAMEKRECHKLREVMSRSTPNKASISARETEVTMLREELMKKTEVIKNLEVMI 1130
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000304 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000304 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000304 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000003042.589e-87100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:4576... [more]
EMLSAP000000063901.372e-6180.74pep:novel supercontig:LSalAtl2s:LSalAtl2s350:20760... [more]
EMLSAP000000069001.737e-2146.85pep:novel supercontig:LSalAtl2s:LSalAtl2s390:41490... [more]
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BLAST of EMLSAG00000000304 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000304 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000304 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000304 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold421_size176100-snap-gene-0.317.822e-732.20protein:Tk10559 transcript:maker-scaffold421_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1044supercontigLSalAtl2s1044:4576..5080 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1044-augustus-gene-0.32
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000304 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000304EMLSAT00000000304-696151Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1044:4576..5080-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000304-683070 ID=EMLSAG00000000304-683070|Name=EMLSAG00000000304|organism=Lepeophtheirus salmonis|type=gene|length=505bp|location=Sequence derived from alignment at LSalAtl2s1044:4576..5080- (Lepeophtheirus salmonis)
CAATGCTGGTGACAGTGAAGTGGTAAAGTTTTTCATAACACATGCATGAT
GTTTTATAAATCTTCTCATTAAAAATAAAAATTTTATGTTTCATTTTTAG
GATTCTTCAGTAGTCGATAACCTCCGTAAAAGGTTGGATTCTACATCTTC
AGAAGTAAATGGTCTTTTAATAAAATTAGATAAAACAAGACAACTGTATG
AAGATCAAGATAAAGTTCTCAAAAAAGTTGAAGAAGAAAAAAATAGGCTT
GATAAGGATTTAAATGATGAAATTGAAACGCTGAGACGTTCTAAAATTAA
AATCAAATCTTCAGAGGATGAGAAAAAGAAGATATTGTCTGAAAAAGAGA
ATGAAATTCAAAATCTAGAAAAGGAAATTAAGAATTTGATGAAGAAAGGT
ATAGCAAATCAACAATCTCTTGAAGATAATTCTAAAGAAATACAAAACCT
GCGATGTGATATTGCTGAGAAGCAAAATATTATTGAAAATCTTGAGATAC
AAGTA
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