EMLSAG00000000367, EMLSAG00000000367-683133 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000000367
Unique Name	EMLSAG00000000367-683133
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date
	Z F205	367	female PreAdult2 Adult	-Missing- no visible phenotype	27.08.2015 - 13:44 01.10.2015 - 00:00

Homology

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BLAST of EMLSAG00000000367 vs. GO
Match: - (symbol:CAGL0I10098g "Similarities with uniprot|P08640 Saccharomyces cerevisiae YIR019c STA1" species:284593 "Candida glabrata CBS 138" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0044406 "adhesion to host" evidence=IMP] GO:GO:0044406 EMBL:CR380955 Gene3D:3.90.182.10 InterPro:IPR011658 Pfam:PF07691 SMART:SM00758 OrthoDB:EOG7H4F6F RefSeq:XP_447684.1 ProteinModelPortal:Q6FQ10 GeneID:2889285 KEGG:cgr:CAGL0I10098g OMA:DNGTGNE Uniprot:Q6FQ10)

HSP 1 Score: 51.2174 bits (121), Expect = 1.992e-6
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0

Query:  133 AAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSAV 198
            A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+   +P A A SAV
Sbjct: 1492 ASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSAV 1557

HSP 2 Score: 50.8322 bits (120), Expect = 2.926e-6
Identity = 37/93 (39.78%), Postives = 51/93 (54.84%), Query Frame = 0

Query:  115 EPYIHQEPVYAPAYYSGY--AAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSAVHAAPAAY 205
             P    +P   P   +G   A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+   +P A A S   A+PAA 
Sbjct: 1450 NPSGTNKPQTKPTANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSN-GASPAAN 1541

HSP 3 Score: 49.6766 bits (117), Expect = 8.375e-6
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 0

Query:  133 AAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSAVHAAPAAY 205
            A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+   +P A A S   A+PAA 
Sbjct: 1481 ASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSN-GASPAAN 1552

HSP 4 Score: 46.595 bits (109), Expect = 8.918e-5
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 0

Query:  133 AAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSA 197
            A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+ A AP A+A ++
Sbjct: 1503 ASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGS-AVAPKASASNS 1566

[Close]

BLAST of EMLSAG00000000367 vs. GO
Match: - (symbol:PWP7 species:5478 "Candida glabrata" [GO:0044406 "adhesion to host" evidence=IMP] [GO:0003674 "molecular_function" evidence=ND] [GO:0005575 "cellular_component" evidence=ND] [GO:0031589 "cell-substrate adhesion" evidence=IEA] [GO:0000501 "flocculation via cell wall protein-carbohydrate interaction" evidence=IEA] GO:GO:0044406 EMBL:CR380955 Gene3D:3.90.182.10 InterPro:IPR011658 Pfam:PF07691 SMART:SM00758 OrthoDB:EOG7H4F6F RefSeq:XP_447684.1 ProteinModelPortal:Q6FQ10 GeneID:2889285 KEGG:cgr:CAGL0I10098g OMA:DNGTGNE Uniprot:Q6FQ10)

HSP 1 Score: 51.2174 bits (121), Expect = 1.992e-6
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 0

Query:  133 AAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSAV 198
            A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+   +P A A SAV
Sbjct: 1492 ASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSAV 1557

HSP 2 Score: 50.8322 bits (120), Expect = 2.926e-6
Identity = 37/93 (39.78%), Postives = 51/93 (54.84%), Query Frame = 0

Query:  115 EPYIHQEPVYAPAYYSGY--AAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSAVHAAPAAY 205
             P    +P   P   +G   A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+   +P A A S   A+PAA 
Sbjct: 1450 NPSGTNKPQTKPTANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSN-GASPAAN 1541

HSP 3 Score: 49.6766 bits (117), Expect = 8.375e-6
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 0

Query:  133 AAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSAVHAAPAAY 205
            A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+   +P A A S   A+PAA 
Sbjct: 1481 ASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSN-GASPAAN 1552

HSP 4 Score: 46.595 bits (109), Expect = 8.918e-5
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 0

Query:  133 AAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSA 197
            A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+  A+PAA  G+ A AP A+A ++
Sbjct: 1503 ASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGSNGASPAANAGS-AVAPKASASNS 1566

[Close]

BLAST of EMLSAG00000000367 vs. L. salmonis peptides
Match: EMLSAP00000000367 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1054:125091:125841:-1 gene:EMLSAG00000000367 transcript:EMLSAT00000000367 description:"maker-LSalAtl2s1054-augustus-gene-0.4")

HSP 1 Score: 349.747 bits (896), Expect = 8.010e-123
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0

Query:    1 MKAFVAVLSTLIAVASSTVLPGAYAHGHGLYGYAGYGAPIAHHGVYAXAPAAYPYAYADAYPVAEPYIHEEVAAEEYVHEEVPAEEYVHQEIAAEEYSHEEVPAEEYVHEEVAAEPYIHQEPVYAPAYYSGYAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSAVHAAPAAYHQY 208
            MKAFVAVLSTLIAVASSTVLPGAYAHGHGLYGYAGYGAPIAHHGVYAXAPAAYPYAYADAYPVAEPYIHEEVAAEEYVHEEVPAEEYVHQEIAAEEYSHEEVPAEEYVHEEVAAEPYIHQEPVYAPAYYSGYAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSAVHAAPAAYHQY
Sbjct:    1 MKAFVAVLSTLIAVASSTVLPGAYAHGHGLYGYAGYGAPIAHHGVYAXAPAAYPYAYADAYPVAEPYIHEEVAAEEYVHEEVPAEEYVHQEIAAEEYSHEEVPAEEYVHEEVAAEPYIHQEPVYAPAYYSGYAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSAVHAAPAAYHQY 208

[Close]

BLAST of EMLSAG00000000367 vs. nr
Match: gi|155966131|gb|ABU41020.1| (hypothetical protein [Lepeophtheirus salmonis])

HSP 1 Score: 348.977 bits (894), Expect = 1.438e-120
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 0

Query:    1 MKAFVAVLSTLIAVASSTVLPGAYAHGHGLYGYAGYGAPIAHHGVYAXAPAAYPYAYADAYPVAEPYIHEEVAAEEYVHEEVPAEEYVHQEIAAEEYSHEEVPAEEYVHEEVAAEPYIHQEPVYAPAYYSGYAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSAVHAAPAAYHQY 208
            MKAFVAVLSTLIAVASSTVLPGAYAHGHGLYGYAGYGAPIAHHGVYA APAAYPYAYADAYPVAEPYIHEEVAAEEYVHEEVPAEEYVHQEIAAEEYSHEEVPAEEYVHEEVAAEPYIHQEPVYAPAYYSGYAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSAVHAAPAAYHQY
Sbjct:    1 MKAFVAVLSTLIAVASSTVLPGAYAHGHGLYGYAGYGAPIAHHGVYAHAPAAYPYAYADAYPVAEPYIHEEVAAEEYVHEEVPAEEYVHQEIAAEEYSHEEVPAEEYVHEEVAAEPYIHQEPVYAPAYYSGYAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYAAAPAAYHGAYATAPVAAAYSAVHAAPAAYHQY 208

The following BLAST results are available for this feature:

BLAST of EMLSAG00000000367 vs. GO
BLAST of EMLSAG00000000367 vs. C. finmarchicus
BLAST of EMLSAG00000000367 vs. L. salmonis peptides
BLAST of EMLSAG00000000367 vs. SwissProt
BLAST of EMLSAG00000000367 vs. Select Arthropod Genomes
BLAST of EMLSAG00000000367 vs. nr
BLAST of EMLSAG00000000367 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000000367 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 2


Match Name	E-value	Identity	Description
-	1.992e-6	46.97	symbol:CAGL0I10098g "Similarities with uniprot\|P08...	[more]
-	1.992e-6	46.97	symbol:PWP7 species:5478 "Candida glabrata" [GO:00...	[more]

BLAST of EMLSAG00000000367 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000000367 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1


Match Name	E-value	Identity	Description
EMLSAP00000000367	8.010e-123	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s1054:1250...	[more]

BLAST of EMLSAG00000000367 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000000367 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000000367 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1


Match Name	E-value	Identity	Description
gi\|155966131\|gb\|ABU41020.1\|	1.438e-120	99.52	hypothetical protein [Lepeophtheirus salmonis]	[more]

BLAST of EMLSAG00000000367 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1054	supercontig	LSalAtl2s1054:125091..125841 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	maker-LSalAtl2s1054-augustus-gene-0.4
Biotype	protein_coding
Evidence	IEA
Note	hypothetical protein [Lepeophtheirus salmonis]

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000000367 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000000367	EMLSAT00000000367-696214	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s1054:125091..125841-

gene from alignment at LSalAtl2s1054:125091..125841-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000000367-683133 ID=EMLSAG00000000367-683133|Name=EMLSAG00000000367|organism=Lepeophtheirus salmonis|type=gene|length=751bp|location=Sequence derived from alignment at LSalAtl2s1054:125091..125841- (Lepeophtheirus salmonis)
ATGAAGGCTTTCGTAAGTGTTATACAGCATCTTTTCTTTCATTTCACAAT
ACAAACAACAAAAACAAATCGATAAACCAATAAAAAGACAACAGCAGTTC
TTTATAAATCATAATAATTACTCACTTCTTTTTCAGGTCGCTGTTCTTTC
TACCCTCATCGCTGTTGCTTCAAGCACAGTCCTCCCCGGTGCCTATGCCC
ATGGACATGGATTGTACGGTTATGCCGGATATGGTGCCCCCATAGCTCAC
CATGGTGTTTATGCTCMCGCTCCTGCCGCCTACCCTTATGCCTACGCTGA
TGCCTACCCCGTTGCCGAACCCTACATCCACGAAGAAGTTGCAGCTGAGG
AATACGTTCACGAAGAGGTCCCTGCTGAGGAATACGTTCATCAAGAGATC
GCTGCTGAGGAATACTCCCACGAGGAGGTCCCTGCTGAGGAATATGTTCA
TGAGGAGGTCGCCGCTGAGCCCTACATTCACCAAGAACCCGTCTATGCTC
CTGCTTATTACTCCGGATATGCTGCCCCAGCAGCTTACCATGGTGCTTAT
GCCGCCGCCCCTGCTGCTTATCACGGTGCCTACGCCGCTGCCCCAGCTGC
TTACCACGGTGCCTACGCCGCTGCCCCAGCTGCTTACCATGGTGCCTACG
CCGCTGCCCCAGCTGCTTACCACGGTGCTTATGCCACTGCTCCCGTTGCT
GCTGCATACTCAGCTGTTCACGCCGCTCCCGCTGCCTACCATCAATACTA
A

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