EMLSAG00000000779, EMLSAG00000000779-683545 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000779 vs. C. finmarchicus
Match: gi|592790331|gb|GAXK01164237.1| (TSA: Calanus finmarchicus comp575685_c0_seq1 transcribed RNA sequence) HSP 1 Score: 123.635 bits (309), Expect = 8.180e-28 Identity = 83/162 (51.23%), Postives = 107/162 (66.05%), Query Frame = 0
Query: 6 ISEIVIFEIRPEDNGFFYCSAANPAGVVRANFTLQVLSKSNIDPQGKTTKDVSLDVSSIXXXXXXXXXXXXXXXMLKVEYILGFGAAAXXXXXXXXXXXXXXXXQCRSRRYKSRLSRALHCDSNSNSNSYIERSTVDFIVPGEMELTXAVRSVSCSSVLSKC 167
+SE+ I +IR ED G ++CS N AG RANFT+ V+ + + TK+ + S +M KVEYILGFGAA V+VLTI I++ILYL+LQCR +R + +L R L CDS S S+S+ ERSTVD+IVPGEMEL AVRSVSC+S +SKC
Sbjct: 2365 VSELFILDIRQEDQGNYFCSGKNAAGSARANFTITVIKRR------QNTKENTTQESK---------------QMFKVEYILGFGAAVVIVLTIIIVLILYLILQCRQKRRERQL-RKLICDSRS-SDSFAERSTVDYIVPGEMELISAVRSVSCNSSMSKC 2781 HSP 2 Score: 49.6766 bits (117), Expect = 5.317e-5 Identity = 45/152 (29.61%), Postives = 66/152 (43.42%), Query Frame = 0
Query: 586 IAESAVRIDLSDSDRAIRRPGSATDLTLANXAA------SPVXSVLRSNRQG------TLECSASIDRRSIIINPSTKGTNKKVMFTGV--SDEGEENSNSSAQDIMPVEEDPVWVLRTDKTEECSLKNTDSRYLSTNLGNDVPITGIVIAQ 723
+ AV++DLS +D++IRRPGSA DL + SP + LR N++G S+ + P +KV F G+ + E+ S I +ED VWV + D + S + VP TG+VIAQ
Sbjct: 346 VRSGAVKVDLSWADKSIRRPGSAPDLVGVDEVPHLHIHNSPGATSLRDNKKGGSLKDRARSTSSESREPPLPKKPGVSPGTRKVAFAGIEDEESDSESEKQSRDSITSFDED-VWVKQPDPPKRPSEEL-------------VPTTGVVIAQ 759 HSP 3 Score: 43.1282 bits (100), Expect = 4.873e-3 Identity = 30/75 (40.00%), Postives = 39/75 (52.00%), Query Frame = 0
Query: 372 HYVTMSRG--MPGYPRTDL--------IRYATSQPHLNGNYPQPRSINSMHPNHQNILTPMSLETSITLPRSSPN 436
HY TMSR + Y + I+Y TSQPHLNG+ H +ILTP+S++TSIT PR P+
Sbjct: 1159 HYATMSRAHELASYKQQSSLDSNDAHNIKY-TSQPHLNGSVSDYLGQRPPHSVGSDILTPLSIKTSITFPRQKPH 1380
BLAST of EMLSAG00000000779 vs. C. finmarchicus
Match: gi|592837697|gb|GAXK01119847.1| (TSA: Calanus finmarchicus comp652853_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.5058 bits (88), Expect = 1.228e-1 Identity = 37/133 (27.82%), Postives = 58/133 (43.61%), Query Frame = 0
Query: 7 SEIVIFEIRPEDNGFFYCSAANPAGVVRANFTLQVLSKSNIDPQGKTTKDVSLDVSSIXXXXXXXXXXXXXXXMLKVEYILGFGAAAXXXXXXXXXXXXXXXXQCRS---RRYKSRLSRALHCDSNSNSNSYI 136
SE+++ +DNG F C A N AG+ ANFTL V+ P ++ + EY++ G AAV+V + ++++ L ++CR RR +S +H NS S S I
Sbjct: 1875 SELILLRTNLDDNGTFQCIAENRAGIAVANFTLNVVIPVPPKPPQDVVEE-----------------------RFQKEYLIAIGIAAVIVSILTTVIVILLAIKCRGIRRRRSQSYEEAKIHLYQNSVSGSDI 2204
BLAST of EMLSAG00000000779 vs. C. finmarchicus
Match: gi|592920817|gb|GAXK01037558.1| (TSA: Calanus finmarchicus comp363331_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 6.149e+0 Identity = 15/35 (42.86%), Postives = 21/35 (60.00%), Query Frame = 0
Query: 7 SEIVIFEIRPEDNGFFYCSAANPAGVVRANFTLQV 41
S++V+ D+G + C A N AG ANFTL+V
Sbjct: 1555 SKLVVTHSADSDSGQYMCVAENKAGRTEANFTLKV 1659
BLAST of EMLSAG00000000779 vs. L. salmonis peptides
Match: EMLSAP00000000779 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1126:67605:89134:1 gene:EMLSAG00000000779 transcript:EMLSAT00000000779 description:"maker-LSalAtl2s1126-snap-gene-0.9") HSP 1 Score: 1745.33 bits (4519), Expect = 0.000e+0 Identity = 862/862 (100.00%), Postives = 862/862 (100.00%), Query Frame = 0
Query: 1 MNTCLISEIVIFEIRPEDNGFFYCSAANPAGVVRANFTLQVLSKSNIDPQGKTTKDVSLDVSSINSQTEEEENSETVVEMLKVEYILGFGAAAVVVLTIXIIMILYLVLQCRSRRYKSRLSRALHCDSNSNSNSYIERSTVDFIVPGEMELTXAVRSVSCSSVLSKCNGNKDGPNNNSNNPNISSSNHMTDDEEEDRDKDEDEYGGRKRRTPRAVRHSSLSERSHYMDGPPSYKXPPPPAXRSEPLCRCCGEPQWRHPSAGNMGFIPPRFVTPYQEAQHIRDCPRNQMHLSHSRGEWNCGSYPPLSQNYNYFDTNNHAMYNMPNGDVMSQESPTKNMRYRSNSLRNPKKYNNPYNSRPYVYPGMHNSNNNLHYVTMSRGMPGYPRTDLIRYATSQPHLNGNYPQPRSINSMHPNHQNILTPMSLETSITLPRSSPNATISTPRYPYLPRQPPRYNMNNSYANQHKPNLPHHHQSNQMENGDVAQHSNIIYDRNEQKKRDDYLFPDLPPPPDANLPIIKNGSRSSSLDDLSSDSRGHDNSQRPFYTLPNQPGLSMNSSSSSSRRRNSYKNRNSSSMSNXSLNNNNNIAESAVRIDLSDSDRAIRRPGSATDLTLANXAASPVXSVLRSNRQGTLECSASIDRRSIIINPSTKGTNKKVMFTGVSDEGEENSNSSAQDIMPVEEDPVWVLRTDKTEECSLKNTDSRYLSTNLGNDVPITGIVIAQPNKYITAGYPPSVMPPKIIPNPLNLLSVNAMSIQQISSHPHHSSSESSSGTVSNLPRPNIGRGSLTLGSSAGSSSSVTSVATPPMMNPILQQXQPLLQHQQQMQGLRPGNPALQRPIQPHFHESPDEGYHEEDGGSETL 862
MNTCLISEIVIFEIRPEDNGFFYCSAANPAGVVRANFTLQVLSKSNIDPQGKTTKDVSLDVSSINSQTEEEENSETVVEMLKVEYILGFGAAAVVVLTIXIIMILYLVLQCRSRRYKSRLSRALHCDSNSNSNSYIERSTVDFIVPGEMELTXAVRSVSCSSVLSKCNGNKDGPNNNSNNPNISSSNHMTDDEEEDRDKDEDEYGGRKRRTPRAVRHSSLSERSHYMDGPPSYKXPPPPAXRSEPLCRCCGEPQWRHPSAGNMGFIPPRFVTPYQEAQHIRDCPRNQMHLSHSRGEWNCGSYPPLSQNYNYFDTNNHAMYNMPNGDVMSQESPTKNMRYRSNSLRNPKKYNNPYNSRPYVYPGMHNSNNNLHYVTMSRGMPGYPRTDLIRYATSQPHLNGNYPQPRSINSMHPNHQNILTPMSLETSITLPRSSPNATISTPRYPYLPRQPPRYNMNNSYANQHKPNLPHHHQSNQMENGDVAQHSNIIYDRNEQKKRDDYLFPDLPPPPDANLPIIKNGSRSSSLDDLSSDSRGHDNSQRPFYTLPNQPGLSMNSSSSSSRRRNSYKNRNSSSMSNXSLNNNNNIAESAVRIDLSDSDRAIRRPGSATDLTLANXAASPVXSVLRSNRQGTLECSASIDRRSIIINPSTKGTNKKVMFTGVSDEGEENSNSSAQDIMPVEEDPVWVLRTDKTEECSLKNTDSRYLSTNLGNDVPITGIVIAQPNKYITAGYPPSVMPPKIIPNPLNLLSVNAMSIQQISSHPHHSSSESSSGTVSNLPRPNIGRGSLTLGSSAGSSSSVTSVATPPMMNPILQQXQPLLQHQQQMQGLRPGNPALQRPIQPHFHESPDEGYHEEDGGSETL
Sbjct: 1 MNTCLISEIVIFEIRPEDNGFFYCSAANPAGVVRANFTLQVLSKSNIDPQGKTTKDVSLDVSSINSQTEEEENSETVVEMLKVEYILGFGAAAVVVLTIXIIMILYLVLQCRSRRYKSRLSRALHCDSNSNSNSYIERSTVDFIVPGEMELTXAVRSVSCSSVLSKCNGNKDGPNNNSNNPNISSSNHMTDDEEEDRDKDEDEYGGRKRRTPRAVRHSSLSERSHYMDGPPSYKXPPPPAXRSEPLCRCCGEPQWRHPSAGNMGFIPPRFVTPYQEAQHIRDCPRNQMHLSHSRGEWNCGSYPPLSQNYNYFDTNNHAMYNMPNGDVMSQESPTKNMRYRSNSLRNPKKYNNPYNSRPYVYPGMHNSNNNLHYVTMSRGMPGYPRTDLIRYATSQPHLNGNYPQPRSINSMHPNHQNILTPMSLETSITLPRSSPNATISTPRYPYLPRQPPRYNMNNSYANQHKPNLPHHHQSNQMENGDVAQHSNIIYDRNEQKKRDDYLFPDLPPPPDANLPIIKNGSRSSSLDDLSSDSRGHDNSQRPFYTLPNQPGLSMNSSSSSSRRRNSYKNRNSSSMSNXSLNNNNNIAESAVRIDLSDSDRAIRRPGSATDLTLANXAASPVXSVLRSNRQGTLECSASIDRRSIIINPSTKGTNKKVMFTGVSDEGEENSNSSAQDIMPVEEDPVWVLRTDKTEECSLKNTDSRYLSTNLGNDVPITGIVIAQPNKYITAGYPPSVMPPKIIPNPLNLLSVNAMSIQQISSHPHHSSSESSSGTVSNLPRPNIGRGSLTLGSSAGSSSSVTSVATPPMMNPILQQXQPLLQHQQQMQGLRPGNPALQRPIQPHFHESPDEGYHEEDGGSETL 862
BLAST of EMLSAG00000000779 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold760_size101448-snap-gene-0.16 (protein:Tk02630 transcript:maker-scaffold760_size101448-snap-gene-0.16-mRNA-1 annotation:"GA18568") HSP 1 Score: 82.0333 bits (201), Expect = 5.380e-16 Identity = 71/162 (43.83%), Postives = 86/162 (53.09%), Query Frame = 0
Query: 5 LISEIVIFEIRPEDNGFFYCSAANPAGVVRANFTLQVLSKSNIDPQGKTT-KDVSLDVSSINSQTEEEENSETVVE--MLKVEYILGFGAAAVVVLTIXIIMILYLVLQCRSRRYKSRLSRALHCDSNSNSNSYIERSTVDFIVPGEMELTXAVRSVSCSSV 163
LISE +I E+R ED+G F+CSA NPAGV NFT+QV S QG+ K+ + + E E N E M+KVEYILGFGAA V+VLTI II+ILYL+LQCR EMELT AVRSVS S++
Sbjct: 438 LISEFLILEVRLEDHGSFFCSAQNPAGVASINFTVQVNGASLRPTQGQEGGKESKAALEKTTNVKESETNKPQATEETMIKVEYILGFGAAVVIVLTIIIILILYLILQCR-----------------------------------EMELTKAVRSVSNSAM 564 HSP 2 Score: 62.003 bits (149), Expect = 6.582e-10 Identity = 111/433 (25.64%), Postives = 166/433 (38.34%), Query Frame = 0
Query: 499 DDYLFPD---------------LPPPPDANLPIIKNGSRSSSLDDL-------SSDSRGHDNSQRPFYTLPNQ-----------------PGLSMNSSSSSSRRRNSYKNRNSSSMSNXSLNNNNNI--AESAVRIDLSDSDRAIRRPGS--------ATDLTLANXAASPVXSVLRSNRQG-----TLECSASIDRRSIIIN-PSTKGTNKKVMFTGVSDEGEENSNSSAQDIMPVEE---DPVWVLRTDKTEECSLKNTDSRYLSTNLGNDVPITGIVIAQPNKYITAGYPPSVMPPKIIPNPLNLLSVNAMSIQQISSHPHHSSSESSSGTVSNLPRPNIGRGSLTLGSSAGSSSSVTSVAT---PPMMNPILQQXQPLLQHQQQMQGLRPGNPALQR-----PIQPHF--HESPDEGYHEE-DGGSETL 862
DDYLFPD P N+P S+ SS DDL + + + +++ F TLP+ PG + +S + + R+ S ++ + + AV++DL+ +D+ IRRP S AT LTL+ S R G TL ++S ++ S+ G K VMFTGVSD G+ S A+D + + + VWVLR D ++ + + +P++G+V AQP LS +A+ + H V N P P +G + L ++G + A PP P LQ R NPAL+R P+ H +ESPDEGYHE+ D GSE +
Sbjct: 1033 DDYLFPDLPPPPDALLDEDSSRTPETKFGNMP----NSKCSSFDDLQHWVSTATDITAAANKAKQGFNTLPSNMASNYHPAYPNYPIHLPPGRKITPGQVTSALKGGARKRSRPEPPLNSRDSYHALRRGSGAVKVDLTFADKTIRRPDSVPDLAQEPATGLTLSPLPMKSQPSPQRRRPGGLKQPSTLGANSSTEKTQTAQRIGSSPGKGKHVMFTGVSD-GDSPSEGQAEDAISSGDAGGEDVWVLRQDNPDDIRRRQQKKEF------ELIPVSGVVFAQPQPCPAP----------------APLSYSALQAPSLDGRIH---------LVDNNPLPLPPKGQILLAGASGGIEKTSKPAKPIPPPRTTPQLQT--------------RATNPALERARTNQPLGGHLSVNESPDEGYHEDGDPGSEVI 1415 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000779 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000779 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 3
BLAST of EMLSAG00000000779 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000779 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000779 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000779 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000779 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1126:67605..89134+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000779-683545 ID=EMLSAG00000000779-683545|Name=EMLSAG00000000779|organism=Lepeophtheirus salmonis|type=gene|length=21530bp|location=Sequence derived from alignment at LSalAtl2s1126:67605..89134+ (Lepeophtheirus salmonis)back to top Add to Basket
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