EMLSAG00000001098, EMLSAG00000001098-683864 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001098
Unique NameEMLSAG00000001098-683864
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000001098 vs. C. finmarchicus
Match: gi|592761525|gb|GAXK01192888.1| (TSA: Calanus finmarchicus comp1374665_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 9.747e-1
Identity = 15/49 (30.61%), Postives = 23/49 (46.94%), Query Frame = 0
Query:   44 LKPLLCHIGRLFWVIVRKIHYM-AHFLCPILRKGDCLQKRPEYMGPSIL 91
            L+P +  +G   W +VR       H      R G CL+ R  ++GP +L
Sbjct:  122 LRPFVLGVGEGLWAVVRGSGVKHCHLN*EAGRGGCCLRARDGHLGPQVL 268          
BLAST of EMLSAG00000001098 vs. C. finmarchicus
Match: gi|592922783|gb|GAXK01035606.1| (TSA: Calanus finmarchicus comp617244_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 2.962e+0
Identity = 17/40 (42.50%), Postives = 21/40 (52.50%), Query Frame = 0
Query:    5 RQYKELIQMCYQAYPHLKKKKGLRSRDLLGHS-ITLICFY 43
            R Y  LIQ   +A  HLK +K   S DL+  S I + C Y
Sbjct:  479 RAYLALIQNSMEAMQHLKVQKSSISTDLISKSPIAVTCHY 598          
BLAST of EMLSAG00000001098 vs. C. finmarchicus
Match: gi|592879862|gb|GAXK01078039.1| (TSA: Calanus finmarchicus comp3137442_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.774e+0
Identity = 9/29 (31.03%), Postives = 18/29 (62.07%), Query Frame = 0
Query:   13 MCYQAYPHLKKKKGLRSRDLLGHSITLIC 41
            +C+ + PH+   +GL   +++ HS+ L C
Sbjct:    2 LCFPSLPHISHSQGLTQLNIVPHSLVLCC 88          
BLAST of EMLSAG00000001098 vs. C. finmarchicus
Match: gi|592911537|gb|GAXK01046838.1| (TSA: Calanus finmarchicus comp139385_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.034e+0
Identity = 20/68 (29.41%), Postives = 35/68 (51.47%), Query Frame = 0
Query:   24 KKGLRSRDLLGHSITLICFYLKPLLCHIGRLFWVIVRKIHYMAHFLCPILRKGDCLQKRPEYMGPSIL 91
             +G+RS DL      L+  +    LC +  +  V+++    + H+LC IL+ G+CL      +GP +L
Sbjct:  226 SRGIRSLDL----DQLVTLHRGNCLC-VSPICSVLLKSCPKLEHYLC-ILKAGECLHCDLSILGPDLL 411          
BLAST of EMLSAG00000001098 vs. C. finmarchicus
Match: gi|592853720|gb|GAXK01103824.1| (TSA: Calanus finmarchicus comp166360_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 4.497e+0
Identity = 11/32 (34.38%), Postives = 19/32 (59.38%), Query Frame = 0
Query:   34 GHSITLICFYLKPLLCHIGRLFWVIVRKIHYM 65
               + L CF  + + C IG+L WV+V  +H++
Sbjct:  144 NFQVMLNCFIFEKV-CDIGQLVWVLVNAVHFL 236          
BLAST of EMLSAG00000001098 vs. C. finmarchicus
Match: gi|592755754|gb|GAXK01198659.1| (TSA: Calanus finmarchicus comp5295567_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 4.949e+0
Identity = 12/42 (28.57%), Postives = 20/42 (47.62%), Query Frame = 0
Query:   15 YQAYPHLKKKKGLRSRDLLGHSITLICFYLKPLLCHIGRLFW 56
            +  +P L  K+G   +  +  +    CF+L P L  +G  FW
Sbjct:  143 WGFFPGLTSKRGYEKK--ITKTAWFFCFFLHPFLEILGNFFW 262          
BLAST of EMLSAG00000001098 vs. C. finmarchicus
Match: gi|592922787|gb|GAXK01035602.1| (TSA: Calanus finmarchicus comp617244_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 7.100e+0
Identity = 17/40 (42.50%), Postives = 21/40 (52.50%), Query Frame = 0
Query:    5 RQYKELIQMCYQAYPHLKKKKGLRSRDLLGHS-ITLICFY 43
            R Y  LIQ   +A  HLK +K   S DL+  S I + C Y
Sbjct:  971 RAYLALIQNSMEAMQHLKVQKSSISTDLISKSPIAVTCHY 1090          
BLAST of EMLSAG00000001098 vs. C. finmarchicus
Match: gi|592922789|gb|GAXK01035600.1| (TSA: Calanus finmarchicus comp617244_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 7.142e+0
Identity = 17/40 (42.50%), Postives = 21/40 (52.50%), Query Frame = 0
Query:    5 RQYKELIQMCYQAYPHLKKKKGLRSRDLLGHS-ITLICFY 43
            R Y  LIQ   +A  HLK +K   S DL+  S I + C Y
Sbjct: 1066 RAYLALIQNSMEAMQHLKVQKSSISTDLISKSPIAVTCHY 1185          
BLAST of EMLSAG00000001098 vs. C. finmarchicus
Match: gi|592865812|gb|GAXK01091750.1| (TSA: Calanus finmarchicus comp4232516_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 7.188e+0
Identity = 16/65 (24.62%), Postives = 28/65 (43.08%), Query Frame = 0
Query:   12 QMCYQAYPHLKKKKGLRSRDLLGHSITLICFYLKPLLCHIGRLF-----WVIVRKIHYMAHFLCP 71
             +C   Y H++      + + +  +  LIC  +  LLCH  RL      +++   I   +HF  P
Sbjct:   25 AICLNRYTHVRSNHNSSTHNEMNLAGILICIVIVFLLCHFPRLIINCAEFLMTNNIVSCSHFTPP 219          
BLAST of EMLSAG00000001098 vs. C. finmarchicus
Match: gi|592848948|gb|GAXK01108596.1| (TSA: Calanus finmarchicus comp4118668_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 9.210e+0
Identity = 14/22 (63.64%), Postives = 15/22 (68.18%), Query Frame = 0
Query:   19 PHLKKKKGLRSRDLLGHSITLI 40
            P  K  KGLRS DL GHS+ LI
Sbjct:  159 P*TK*SKGLRSGDLAGHSLPLI 224          
BLAST of EMLSAG00000001098 vs. L. salmonis peptides
Match: EMLSAP00000001098 (pep:novel supercontig:LSalAtl2s:LSalAtl2s117:967861:968875:-1 gene:EMLSAG00000001098 transcript:EMLSAT00000001098 description:"snap-LSalAtl2s117-processed-gene-9.44")

HSP 1 Score: 194.126 bits (492), Expect = 3.718e-65
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query:    1 MYKERQYKELIQMCYQAYPHLKKKKGLRSRDLLGHSITLICFYLKPLLCHIGRLFWVIVRKIHYMAHFLCPILRKGDCLQKRPEYMGPSILPSMR 95
            MYKERQYKELIQMCYQAYPHLKKKKGLRSRDLLGHSITLICFYLKPLLCHIGRLFWVIVRKIHYMAHFLCPILRKGDCLQKRPEYMGPSILPSMR
Sbjct:    1 MYKERQYKELIQMCYQAYPHLKKKKGLRSRDLLGHSITLICFYLKPLLCHIGRLFWVIVRKIHYMAHFLCPILRKGDCLQKRPEYMGPSILPSMR 95          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001098 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001098 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 10
Match NameE-valueIdentityDescription
gi|592761525|gb|GAXK01192888.1|9.747e-130.61TSA: Calanus finmarchicus comp1374665_c0_seq1 tran... [more]
gi|592922783|gb|GAXK01035606.1|2.962e+042.50TSA: Calanus finmarchicus comp617244_c0_seq7 trans... [more]
gi|592879862|gb|GAXK01078039.1|3.774e+031.03TSA: Calanus finmarchicus comp3137442_c0_seq1 tran... [more]
gi|592911537|gb|GAXK01046838.1|4.034e+029.41TSA: Calanus finmarchicus comp139385_c0_seq1 trans... [more]
gi|592853720|gb|GAXK01103824.1|4.497e+034.38TSA: Calanus finmarchicus comp166360_c0_seq1 trans... [more]
gi|592755754|gb|GAXK01198659.1|4.949e+028.57TSA: Calanus finmarchicus comp5295567_c0_seq1 tran... [more]
gi|592922787|gb|GAXK01035602.1|7.100e+042.50TSA: Calanus finmarchicus comp617244_c0_seq3 trans... [more]
gi|592922789|gb|GAXK01035600.1|7.142e+042.50TSA: Calanus finmarchicus comp617244_c0_seq1 trans... [more]
gi|592865812|gb|GAXK01091750.1|7.188e+024.62TSA: Calanus finmarchicus comp4232516_c0_seq1 tran... [more]
gi|592848948|gb|GAXK01108596.1|9.210e+063.64TSA: Calanus finmarchicus comp4118668_c0_seq1 tran... [more]
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BLAST of EMLSAG00000001098 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000010983.718e-65100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s117:96786... [more]
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BLAST of EMLSAG00000001098 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001098 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001098 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001098 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s117supercontigLSalAtl2s117:967861..968875 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s117-processed-gene-9.44
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001098 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001098EMLSAT00000001098-696945Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s117:967861..968875-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001098-683864 ID=EMLSAG00000001098-683864|Name=EMLSAG00000001098|organism=Lepeophtheirus salmonis|type=gene|length=1015bp|location=Sequence derived from alignment at LSalAtl2s117:967861..968875- (Lepeophtheirus salmonis)
ATGTATAAGGAAAGACAGTATAAAGAATTGATCCAAATGTGTTATCAAGC GTATCCCCATTTAAAGAAGAAAAAAGGTATAATCAATTCGATTGGTAGGT TATTAATTATAAAAATATTCAAAGGTAWCAAGTTTTGGACAATCACAGAC AGAAGGAAAAGGAGGGCCGGGGGGAGGGGGGTCAAACATTCTACATTTGA CTGGATGTTATAAATGTATGACCTCCTCTTTGTTCGATCTACAAAAAAAT CATAACACTCTACGACAGGCTTAGGATTTTTAAACTATAACGCAACACTA ATAAGTCCGTATTTTGAAACAAAATTATCTTTTTTTGGGCTTTTCAATAT AAATATATATAATATACAAACAAGTTATTGACGAGTTTTGAACTGATTCT TCAATGACCAATCAAGACGCACATGATATGTGGCCATTTTAATACTATTA TAAATAATAATGATATCAATTAGGTTGGTGATTGATATTTTATGAACGCA TACACAACATACTCCAAACCAAACTTGATCCTACTATATCATAATATGTA ACTAGGCTGCCTTTTCTCCCTTGATAACATATCTGCTCCAACGCCCATTA ATAAAGGAAGTAAATTTACAGAAACAGATATAGTGTGTAAATTGTATTAG GTACTACGTATTCTACCTCTCTTTATCGTCCAATTTGTGTAAGGGTGAGT CATTAGACAGTCCGTCCAGTTCTTCTAACCTCTTATGGAAGAAATTAGGA TTTAATCTCTAGCCGATTTTGTAAGTTTACCCATTGATATATATTTTCTA TAGGATTGAGATCCAGAGACCTACTAGGTCATTCCATCACCTTAATATGC TTCTACCTTAAGCCACTCCTTTGTCACATTGGTCGATTATTTTGGGTCAT TGTACGGAAAATACATTACATGGCCCATTTTCTGTGCCCTATCCTGAGAA AAGGAGATTGTCTCCAAAAACGACCAGAGTACATGGGTCCTTCCATTCTT CCTTCAATGCGATGA
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