EMLSAG00000001200, EMLSAG00000001200-683966 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000001200
Unique Name	EMLSAG00000001200-683966
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592931238|gb|GAXK01027315.1| (TSA: Calanus finmarchicus comp1338286_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 59.6918 bits (143), Expect = 5.047e-11
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            AD+ YN A+INTNVIV   G +VWLSHG++KSSC+ISVE
Sbjct:  806 ADAQYNTAVINTNVIVSYTGEVVWLSHGMFKSSCDISVE 922

[Close]

BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592931239|gb|GAXK01027314.1| (TSA: Calanus finmarchicus comp1338286_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 59.6918 bits (143), Expect = 6.543e-11
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            AD+ YN A+INTNVIV   G +VWLSHG++KSSC+ISVE
Sbjct: 1407 ADAQYNTAVINTNVIVSYTGEVVWLSHGMFKSSCDISVE 1523

[Close]

BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592931240|gb|GAXK01027313.1| (TSA: Calanus finmarchicus comp1338286_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 59.6918 bits (143), Expect = 6.620e-11
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            AD+ YN A+INTNVIV   G +VWLSHG++KSSC+ISVE
Sbjct: 1451 ADAQYNTAVINTNVIVSYTGEVVWLSHGMFKSSCDISVE 1567

[Close]

BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592880853|gb|GAXK01077048.1| (TSA: Calanus finmarchicus comp2898086_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 48.521 bits (114), Expect = 3.679e-7
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +AD  YN+ + +TN IV  DG + WLS  I+KSSC I+VE
Sbjct:  510 NADRQYNSGVTSTNAIVTADGNVTWLSSAIFKSSCAINVE 629

[Close]

BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592880515|gb|GAXK01077386.1| (TSA: Calanus finmarchicus comp846495_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 1.018e-2
Identity = 16/47 (34.04%), Postives = 26/47 (55.32%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGHL 63
            AD  ++     TNV+V NDG  +++  GI+KS+C I +     +  L
Sbjct:  116 ADEKFDGTY-QTNVVVSNDGSCLYVPPGIFKSTCKIDITWFPFDDQL 253

[Close]

BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592835445|gb|GAXK01122099.1| (TSA: Calanus finmarchicus comp106759_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.4242 bits (80), Expect = 1.154e-2
Identity = 16/39 (41.03%), Postives = 24/39 (61.54%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISV 54
            +AD NY      +NV++  DG ++W+   IY+SSC I V
Sbjct: 1895 NADGNYE-VRYKSNVLIYPDGEVLWIPPAIYQSSCTIDV 2008

[Close]

BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592930925|gb|GAXK01027628.1| (TSA: Calanus finmarchicus comp3431390_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 2.642e-2
Identity = 20/46 (43.48%), Postives = 26/46 (56.52%), Query Frame = 0

Query:   10 LLCPPKHADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +LC    AD +Y   ++ T  IV + G I+W    IYKSSC I VE
Sbjct:  538 ILCVFLSADGSYEVKLM-TKAIVYHTGDILWQPPAIYKSSCVIDVE 672

[Close]

BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592900992|gb|GAXK01057383.1| (TSA: Calanus finmarchicus comp4318389_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 3.266e-2
Identity = 17/46 (36.96%), Postives = 26/46 (56.52%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGH 62
            A +N +N + NT + V  DG + WL+ G+Y S C I V+   L+  
Sbjct:  439 AGTNRDNEL-NTYIQVSYDGNVTWLTQGMYVSKCEIDVKYYPLDAQ 573

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BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592880516|gb|GAXK01077385.1| (TSA: Calanus finmarchicus comp846495_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 4.813e-2
Identity = 15/38 (39.47%), Postives = 24/38 (63.16%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISV 54
            AD  ++     TNV+V NDG  +++  GI+KS+C I +
Sbjct: 1045 ADEKFDGTY-QTNVVVSNDGSCLYVPPGIFKSTCKIDI 1155

[Close]

BLAST of EMLSAG00000001200 vs. C. finmarchicus
Match: gi|592816752|gb|GAXK01137816.1| (TSA: Calanus finmarchicus comp1531236_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 6.244e-2
Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISV 54
            A+ N++ A   TN+IV +DG I  +  GI+KS+C I +
Sbjct: 1017 ANENFD-ATFPTNIIVNHDGVISQIPPGIFKSTCKIDI 1127

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BLAST of EMLSAG00000001200 vs. L. salmonis peptides
Match: EMLSAP00000001200 (pep:novel supercontig:LSalAtl2s:LSalAtl2s119:21583:25034:-1 gene:EMLSAG00000001200 transcript:EMLSAT00000001200 description:"snap-LSalAtl2s119-processed-gene-0.19")

HSP 1 Score: 132.109 bits (331), Expect = 9.546e-42
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query:    1 MNFGYFKCHLLCPPKHADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGHLH 64
            MNFGYFKCHLLCPPKHADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGHLH
Sbjct:    1 MNFGYFKCHLLCPPKHADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVESTILNGHLH 64

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BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: XP_625040.2 (PREDICTED: neuronal acetylcholine receptor subunit alpha-10 [Apis mellifera])

HSP 1 Score: 60.8474 bits (146), Expect = 5.267e-12
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +AD  Y++A+INTNVIV + G +VWLSHGI++SSC+I VE
Sbjct:   60 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVE 99

[Close]

BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: XP_392070.3 (PREDICTED: neuronal acetylcholine receptor subunit alpha-10 [Apis mellifera])

HSP 1 Score: 60.8474 bits (146), Expect = 5.336e-12
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +AD  Y++A+INTNVIV + G +VWLSHGI++SSC+I VE
Sbjct:  185 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVE 224

[Close]

BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: EFX64585.1 (hypothetical protein DAPPUDRAFT_66098, partial [Daphnia pulex])

HSP 1 Score: 59.6918 bits (143), Expect = 1.060e-11
Identity = 24/40 (60.00%), Postives = 36/40 (90.00%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +AD+ Y +++INTNVIV ++G +VWLSHGI++SSC+I+VE
Sbjct:   95 NADAQYTSSVINTNVIVSDNGEVVWLSHGIFRSSCDINVE 134

[Close]

BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|EFA02896.1| (nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum])

HSP 1 Score: 58.151 bits (139), Expect = 4.514e-11
Identity = 23/40 (57.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +AD  + +++INTNVIV + G ++WLSHGIY+SSC+I+VE
Sbjct:  111 NADPQFQSSVINTNVIVSSSGEVLWLSHGIYRSSCDINVE 150

[Close]

BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|KYB28011.1| (nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum])

HSP 1 Score: 57.7658 bits (138), Expect = 5.711e-11
Identity = 23/40 (57.50%), Postives = 34/40 (85.00%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +AD  + +++INTNVIV + G ++WLSHGIY+SSC+I+VE
Sbjct:  111 NADPQFQSSVINTNVIVSSSGEVLWLSHGIYRSSCDINVE 150

[Close]

BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|KYB28012.1| (nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum])

HSP 1 Score: 55.8398 bits (133), Expect = 2.537e-10
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            AD  + +++INTNVIV + G ++WLSHGIY+SSC+I+VE
Sbjct:  112 ADPQFQSSVINTNVIVSSSGEVLWLSHGIYRSSCDINVE 150

[Close]

BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|KYB28013.1| (nicotinic acetylcholine receptor subunit alpha5 [Tribolium castaneum])

HSP 1 Score: 55.4546 bits (132), Expect = 3.374e-10
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            AD  + +++INTNVIV + G ++WLSHGIY+SSC+I+VE
Sbjct:  112 ADPQFQSSVINTNVIVSSSGEVLWLSHGIYRSSCDINVE 150

[Close]

BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: EFX76216.1 (hypothetical protein DAPPUDRAFT_55424, partial [Daphnia pulex])

HSP 1 Score: 55.4546 bits (132), Expect = 3.870e-10
Identity = 24/40 (60.00%), Postives = 33/40 (82.50%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +ADS YN+A+++TNVIV +DG + WLS  I+KSSC I+VE
Sbjct:   91 NADSEYNSALLSTNVIVTHDGNLTWLSSAIFKSSCGINVE 130

[Close]

BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Match: gb|KFM71318.1| (Neuronal acetylcholine receptor subunit alpha-7, partial [Stegodyphus mimosarum])

HSP 1 Score: 52.7582 bits (125), Expect = 2.830e-9
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISV 54
            +ADS YNNAI++TNVIV +DG + WLS  I++SSC I+V
Sbjct:  123 NADSQYNNAILSTNVIVSSDGNLTWLSSAIFRSSCKINV 161

[Close]

BLAST of EMLSAG00000001200 vs. nr
Match: gi|662220656|ref|XP_008484475.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-3-like, partial [Diaphorina citri])

HSP 1 Score: 61.6178 bits (148), Expect = 9.284e-11
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            AD+ YN+A+INTNVIV  DG + WLSHGIY+SSC+I VE
Sbjct:    1 ADAQYNSAVINTNVIVTADGEVTWLSHGIYRSSCDIDVE 39

[Close]

BLAST of EMLSAG00000001200 vs. nr
Match: gi|1101349428|ref|XP_018900624.1| (PREDICTED: neuronal acetylcholine receptor subunit beta-3-like isoform X2 [Bemisia tabaci])

HSP 1 Score: 62.7734 bits (151), Expect = 1.413e-10
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            ADS YN+A+INTNVIV +DG + WLSHGIY+SSC+I VE
Sbjct:  122 ADSQYNSAVINTNVIVKHDGEVTWLSHGIYRSSCDIDVE 160

[Close]

BLAST of EMLSAG00000001200 vs. nr
Match: gi|584600374|gb|AHJ11213.1| (nicotinic acetylcholine receptor alpha5 [Locusta migratoria])

HSP 1 Score: 63.5438 bits (153), Expect = 2.407e-10
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +ADS YN+A+INTNVIV   G +VWLSHGI++SSC+I+VE
Sbjct:   84 NADSQYNSAVINTNVIVTYTGEVVWLSHGIFRSSCDINVE 123

[Close]

BLAST of EMLSAG00000001200 vs. nr
Match: gi|1101349426|ref|XP_018900623.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-10-like isoform X1 [Bemisia tabaci])

HSP 1 Score: 62.7734 bits (151), Expect = 3.550e-10
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            ADS YN+A+INTNVIV +DG + WLSHGIY+SSC+I VE
Sbjct:  122 ADSQYNSAVINTNVIVKHDGEVTWLSHGIYRSSCDIDVE 160

[Close]

BLAST of EMLSAG00000001200 vs. nr
Match: gi|646715003|gb|KDR18759.1| (Neuronal acetylcholine receptor subunit alpha-7, partial [Zootermopsis nevadensis])

HSP 1 Score: 62.7734 bits (151), Expect = 4.207e-10
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +ADS YN+A+INTNVIV   G +VWLSHGI++SSC+I+VE
Sbjct:   97 NADSQYNSAVINTNVIVTYTGEVVWLSHGIFRSSCDINVE 136

[Close]

BLAST of EMLSAG00000001200 vs. nr
Match: gi|1059391857|ref|XP_017770382.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-10-like [Nicrophorus vespilloides])

HSP 1 Score: 62.3882 bits (150), Expect = 6.308e-10
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +AD  Y +++INTNVIV N G +VWLSHGIY+SSC+I+VE
Sbjct:  123 NADPQYQSSVINTNVIVSNSGKVVWLSHGIYRSSCDINVE 162

[Close]

BLAST of EMLSAG00000001200 vs. nr
Match: gi|755940528|ref|XP_011298138.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Fopius arisanus])

HSP 1 Score: 62.3882 bits (150), Expect = 6.956e-10
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +AD  Y++A+INTNVIV + G +VWLSHGI++SSCNI VE
Sbjct:  123 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCNIDVE 162

[Close]

BLAST of EMLSAG00000001200 vs. nr
Match: gi|970880585|ref|XP_015112532.1| (PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Diachasma alloeum])

HSP 1 Score: 62.003 bits (149), Expect = 8.205e-10
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +AD  Y++A+INTNVIV + G +VWLSHGI++SSCNI VE
Sbjct:  113 NADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCNIDVE 152

[Close]

BLAST of EMLSAG00000001200 vs. nr
Match: gi|942365977|gb|JAN64918.1| (Neuronal acetylcholine receptor subunit alpha-10 [Daphnia magna] >gi|1022772256|gb|KZS16441.1| Neuronal acetylcholine receptor subunit alpha-7 [Daphnia magna])

HSP 1 Score: 61.2326 bits (147), Expect = 1.501e-9
Identity = 24/40 (60.00%), Postives = 36/40 (90.00%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +AD+ Y +++INTNVIV ++G +VWLSHGI++SSC+I+VE
Sbjct:  130 NADAQYTSSVINTNVIVSDNGEVVWLSHGIFRSSCDINVE 169

[Close]

BLAST of EMLSAG00000001200 vs. nr
Match: gi|942411763|gb|JAN87811.1| (Neuronal acetylcholine receptor subunit alpha-10 [Daphnia magna])

HSP 1 Score: 61.2326 bits (147), Expect = 1.547e-9
Identity = 24/40 (60.00%), Postives = 36/40 (90.00%), Query Frame = 0

Query:   16 HADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            +AD+ Y +++INTNVIV ++G +VWLSHGI++SSC+I+VE
Sbjct:  130 NADAQYTSSVINTNVIVSDNGEVVWLSHGIFRSSCDINVE 169

[Close]

BLAST of EMLSAG00000001200 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1305_size49401-snap-gene-0.21 (protein:Tk01703 transcript:maker-scaffold1305_size49401-snap-gene-0.21-mRNA-1 annotation:"neuronal acetylcholine receptor subunit alpha- partial")

HSP 1 Score: 63.929 bits (154), Expect = 2.644e-14
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0

Query:   17 ADSNYNNAIINTNVIVMNDGYIVWLSHGIYKSSCNISVE 55
            ADSNYN AIINTNVIV   G +VWLSHGI+KSSC+ISVE
Sbjct:  117 ADSNYNMAIINTNVIVSYTGEVVWLSHGIFKSSCDISVE 155

The following BLAST results are available for this feature:

BLAST of EMLSAG00000001200 vs. GO
BLAST of EMLSAG00000001200 vs. C. finmarchicus
BLAST of EMLSAG00000001200 vs. L. salmonis peptides
BLAST of EMLSAG00000001200 vs. SwissProt
BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
BLAST of EMLSAG00000001200 vs. nr
BLAST of EMLSAG00000001200 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000001200 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000001200 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|592931238\|gb\|GAXK01027315.1\|	5.047e-11	69.23	TSA: Calanus finmarchicus comp1338286_c0_seq3 tran...	[more]
gi\|592931239\|gb\|GAXK01027314.1\|	6.543e-11	69.23	TSA: Calanus finmarchicus comp1338286_c0_seq2 tran...	[more]
gi\|592931240\|gb\|GAXK01027313.1\|	6.620e-11	69.23	TSA: Calanus finmarchicus comp1338286_c0_seq1 tran...	[more]
gi\|592880853\|gb\|GAXK01077048.1\|	3.679e-7	52.50	TSA: Calanus finmarchicus comp2898086_c0_seq1 tran...	[more]
gi\|592880515\|gb\|GAXK01077386.1\|	1.018e-2	34.04	TSA: Calanus finmarchicus comp846495_c0_seq2 trans...	[more]
gi\|592835445\|gb\|GAXK01122099.1\|	1.154e-2	41.03	TSA: Calanus finmarchicus comp106759_c0_seq1 trans...	[more]
gi\|592930925\|gb\|GAXK01027628.1\|	2.642e-2	43.48	TSA: Calanus finmarchicus comp3431390_c0_seq1 tran...	[more]
gi\|592900992\|gb\|GAXK01057383.1\|	3.266e-2	36.96	TSA: Calanus finmarchicus comp4318389_c0_seq1 tran...	[more]
gi\|592880516\|gb\|GAXK01077385.1\|	4.813e-2	39.47	TSA: Calanus finmarchicus comp846495_c0_seq1 trans...	[more]
gi\|592816752\|gb\|GAXK01137816.1\|	6.244e-2	42.11	TSA: Calanus finmarchicus comp1531236_c0_seq1 tran...	[more]

Pages

BLAST of EMLSAG00000001200 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1


Match Name	E-value	Identity	Description
EMLSAP00000001200	9.546e-42	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s119:21583...	[more]

BLAST of EMLSAG00000001200 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000001200 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 9


Match Name	E-value	Identity	Description
XP_625040.2	5.267e-12	62.50	PREDICTED: neuronal acetylcholine receptor subunit...	[more]
XP_392070.3	5.336e-12	62.50	PREDICTED: neuronal acetylcholine receptor subunit...	[more]
EFX64585.1	1.060e-11	60.00	hypothetical protein DAPPUDRAFT_66098, partial [Da...	[more]
gb\|EFA02896.1\|	4.514e-11	57.50	nicotinic acetylcholine receptor subunit alpha5 [T...	[more]
gb\|KYB28011.1\|	5.711e-11	57.50	nicotinic acetylcholine receptor subunit alpha5 [T...	[more]
gb\|KYB28012.1\|	2.537e-10	58.97	nicotinic acetylcholine receptor subunit alpha5 [T...	[more]
gb\|KYB28013.1\|	3.374e-10	58.97	nicotinic acetylcholine receptor subunit alpha5 [T...	[more]
EFX76216.1	3.870e-10	60.00	hypothetical protein DAPPUDRAFT_55424, partial [Da...	[more]
gb\|KFM71318.1\|	2.830e-9	61.54	Neuronal acetylcholine receptor subunit alpha-7, p...	[more]

BLAST of EMLSAG00000001200 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25


Match Name	E-value	Identity	Description
gi\|662220656\|ref\|XP_008484475.1\|	9.284e-11	69.23	PREDICTED: neuronal acetylcholine receptor subunit...	[more]
gi\|1101349428\|ref\|XP_018900624.1\|	1.413e-10	71.79	PREDICTED: neuronal acetylcholine receptor subunit...	[more]
gi\|584600374\|gb\|AHJ11213.1\|	2.407e-10	67.50	nicotinic acetylcholine receptor alpha5 [Locusta m...	[more]
gi\|1101349426\|ref\|XP_018900623.1\|	3.550e-10	71.79	PREDICTED: neuronal acetylcholine receptor subunit...	[more]
gi\|646715003\|gb\|KDR18759.1\|	4.207e-10	67.50	Neuronal acetylcholine receptor subunit alpha-7, p...	[more]
gi\|1059391857\|ref\|XP_017770382.1\|	6.308e-10	65.00	PREDICTED: neuronal acetylcholine receptor subunit...	[more]
gi\|755940528\|ref\|XP_011298138.1\|	6.956e-10	65.00	PREDICTED: neuronal acetylcholine receptor subunit...	[more]
gi\|970880585\|ref\|XP_015112532.1\|	8.205e-10	65.00	PREDICTED: neuronal acetylcholine receptor subunit...	[more]
gi\|942365977\|gb\|JAN64918.1\|	1.501e-9	60.00	Neuronal acetylcholine receptor subunit alpha-10 [...	[more]
gi\|942411763\|gb\|JAN87811.1\|	1.547e-9	60.00	Neuronal acetylcholine receptor subunit alpha-10 [...	[more]

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BLAST of EMLSAG00000001200 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1


Match Name	E-value	Identity	Description
maker-scaffold1305_size49401-snap-gene-0.21	2.644e-14	79.49	protein:Tk01703 transcript:maker-scaffold1305_size...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s119	supercontig	LSalAtl2s119:21583..25034 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	snap-LSalAtl2s119-processed-gene-0.19
Biotype	protein_coding
Evidence	IEA
Note	PREDICTED: neuronal acetylcholine receptor subunit alpha-3-like, partial [Diaphorina citri]

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000001200 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000001200	EMLSAT00000001200-697047	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s119:21583..25034-

gene from alignment at LSalAtl2s119:21583..25034-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000001200-683966 ID=EMLSAG00000001200-683966|Name=EMLSAG00000001200|organism=Lepeophtheirus salmonis|type=gene|length=3452bp|location=Sequence derived from alignment at LSalAtl2s119:21583..25034- (Lepeophtheirus salmonis)
ATGAATTTTGGCTATTTTAAGTGCCATTTGCTGTGCCCTCCAAAGCAGTA
ATAAAAATCATTTGTAGATATAAATTGACAATAAAAATTAGTTTAAGAAT
TCAAATACAGTCTGAATTCAATTTAAAAAAAGATTACAGCTCGTTGACAG
GCCAAATATTCTTTTTATCTTAAAGAGAATGATTAAAAATATCTTCCTTT
TAATGTCGCAGAAAAAAACTCGACTAAGGAATAATCTAAAAAAAGGTCAG
TGATATTGGCTCTGAAATTTGTTTTAGCAGATGATTAATCATCAAAGCCA
TTCATTTTCTCATATTTATTCACAAAAACTTATCCATATAAACCATCTTC
AGAAAAATTGTAAATAATATATTGTTTGCTTGGTTATACGCGAACTTAGT
CAGAATTTGACGACAATAAAATAAATGTTCAATTAATCCAAACAAAATTG
TAGTTTATGAATAATAAATGGATAATGACGATGATTAAAAAATAGAATAA
GTTTGTAGTTTGCATTAAATAATATGAATTGTAATAGTAATTACTAATAA
GAAAATGAATAGTGCGTGGTTATTGTAAAATATACGCGCTTGATTTTAGT
GTTCATGTCCTATATTAAAAGATGTCTTGTCTTTTATCAAAGTAACATCT
TAGTAGTATAATCTACCGTTTTTATAGCTTACTTTGCAAATTTTAAATAA
TATAGACGTATAAAGATGTTCATTACATGGAGAAAAAATCTTAATTTGCA
AGAAATTTGCATAAAATATCGCAAAGTTCAATAAACACACATTTAAAAAT
AAAAATACAAAGAAATATAACTATAGAATACTTTAAAATTTTTAAAGATG
TTCCATATAGCTATTTATATCATTTATAGTAATTTTTTTTTCTATATAAA
AGGTAGTAAAATATGAAACAGTACAAGAAAACTTTTTTAATTATTTTTTA
TGTATGTATATTGTACATATAGGATGTGTAAACATAAAGATAAATAATGA
ACAAGTATCGAGAAAAGGAGAAAATTCATTTTTTTACTTTATGAAGTGTA
GTTCTTTTAAACGTTTGCAATTTCCTCTGGCCTCATTACACCCCCCTACA
AATCAGTTTCAAAACAAATACACATTAATAGAGAGTATGTCCGATAAGAA
TGTAACTCTACACAGTAACACATTTATACAGATTGTGTGAAACAAAATAT
TTTAGAAGGGTTGGGACAAAATTGTAAGGAGTTTGGATTTGCAGTAAAAG
TCGTGGACTTTTTTTTTCGGACCCGTCAAAGGAGGGAGAAAAGTGGCTAT
CTGAAGGAATCTTTAGATCCAAAAAATAATTATGGATTGACGAATAAAGA
CCATAGATACACTTATGAGCCATCTAGTATTTTAACTGCTCTTATTTAAC
TATTTTTACGAAGAACTTTGCTTTTTAATGGACACATCAATTTTAAATTT
GACGGTAGGACATGCCAAAAAAGTTCAAAAGAAGAAGAGTTTTAGAGTTA
TTTTACTTAGTTTTATTTATTTTCTTGTTAAAGTGTAGTTACATTAGGAT
AAAATATATATTTAAAAAAGAAATTGGTTTTTGGTAAAATATTTTATTTA
TCTGACGTTAGTTTTGGTATAATAACTTCAAGGTTGAAGAAAAGTTACAT
CTATTTTTAATTGTCAATTCTGTTTGTGTGTTCGGAAGATAGATTTACTT
TCTTATATCTTTGGAATCATTCAAAAGTAAAAATATGAACAAATCTAATT
ATTTATTATAAAAATCGGTTAAATTTACCTGATATTTTTAACAAATGTAT
TAATTACATTTCAAAATATATTTTACATATATAGTTCATTTGTTTTTTCA
TAGTGCGGACTCCAATTATAACAATGCAATCATTAATACCAATGTCATAG
TTATGAATGATGGGTACATTGTTTGGCTATCTCACGGAATCTACAAATCC
AGTTGTAATATCTCCGTCGAGTACTTTCCTTTTGATATACAAACCTGCAA
AATGAAATGGGCTTCCTGGACATATGATGGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
ATATTCTAAAATTTATCAATTTTCTATGGAATGTGATCATGTCTCATAAG
GACAGCAGATCGAACAAAAAATAAAGTCAGGCAAGAATCCATTTTTTTTT
TAGAGGATGATGAAAATTATATCATACCACATAGAAAAACGAGGGTATAT
AAAGTGTTTTAAGGCTATAAATCTTGAATGTAAGGTACATTTATAAGTCC
TCCATATAAATATATACAATAGATAAGTTTCTCCATAACTTATTCTCCAT
TTTCGCCATCTTATAAGGAAAATCAAAGTTATCCCAAACTGCAGACTTGT
AAGTATTAGAGGGAGGAATATCCAACTCCATATCAAATTCGATACCATAA
ATAATTGTTGGTCATGATGCTTAAAGAAAAATCTTTTGTTCGATTCTGTA
AAAAAATAATAAGCTACGCATTTGCTCCAGTTTATTTATATATGTATGTT
ATCTGTAAGAATGATATAAAAAAATCAGCAGAATTTTATATTTTCAAAAT
ATTTAATATGTGATTATATACGTACTGCACCAAGAGTAAAAACAGACCGA
ACCAACCTGCAATATAGCCCTATACCGTACCAGGCTTAATATATATGTAT
ATAGCTTATGTAAAACTTTTTGAATGCATTCTGATTGCCTTAGCTTATGA
CATCATGTAGAAAAGTAGCCCTCTTTTTTGAACATAGATAGTTCAGTACT
CTTCAAATGCTATAGAATTTTCAATAGAAAATTACATTTCAATTTTAAGT
TATCGTTAACAACATAAATTAAAGAATATTGTAGTTTCTATGAAACTATA
GTGCTCCTTGTACGCTTATACGTTTGAATTTTTTTTANNAAATAYGGGAG
CAATAATTAATAATATTGCAGGTCACTAATAAATACTTTTTTTTGAATAT
ATCTATACTAGGATTTCGACAATCTTCACATCCCTGCTCAATACTACTAA
TCTTTACTTTTCCCAATTCTTGAAAGTGTGAGGGCTTCAATGTCATTTTA
TGAAGGTTTTATTTTATCCTGACATATTTTTTAAAACAGTAATTATCTCT
GCAATAATCAAGTTAAAATAGTTAGCCTATATCTTTATAGATAATATGGA
AACAAATTGTCTGAAAATAGTATATTTTGATCCAAAAATCTGACTTTCTC
GTCTTTATATTGACAATACAATGGCGAAAATGACAAGAGATACCCTAGAA
TTATTCCGATAGTGTTTTTTCAATATCTTTTACCAAAAAACGGATCACTC
TTAGATACAAAGATTATGAAACCGGAAACTGAGATATCCGTTTTGTTTTT
ATATAAATGTACTTCTTATAGAAGTACCATTCTCAATGGTCACCTTCACT
AA

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