EMLSAG00000002949, EMLSAG00000002949-685715 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002949
Unique NameEMLSAG00000002949-685715
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000002949 vs. C. finmarchicus
Match: gi|592803452|gb|GAXK01151116.1| (TSA: Calanus finmarchicus comp5465164_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 1.055e+0
Identity = 17/31 (54.84%), Postives = 18/31 (58.06%), Query Frame = 0 
Query:   21 GIQTFAYIPRHLSIFFPLSQGSRNF--FLAL 49
             IQ     P H SIF PL  GSR+F  FLAL
Sbjct:  175 SIQLVFQDPYHASIFLPLQSGSRHFH*FLAL 267
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BLAST of EMLSAG00000002949 vs. C. finmarchicus
Match: gi|592776410|gb|GAXK01178158.1| (TSA: Calanus finmarchicus comp14689_c4_seq13 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 4.079e+0
Identity = 10/31 (32.26%), Postives = 17/31 (54.84%), Query Frame = 0 
Query:    1 MMSSNQPSKYYGCFGECFSLGIQTFAYIPRH 31
            + +S  P+  Y C  +C+SLG+  +  I  H
Sbjct:  731 LSNSKVPNTMYSCKSDCWSLGVVLYMLISGH 823
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BLAST of EMLSAG00000002949 vs. C. finmarchicus
Match: gi|592776411|gb|GAXK01178157.1| (TSA: Calanus finmarchicus comp14689_c4_seq12 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 4.080e+0
Identity = 10/31 (32.26%), Postives = 17/31 (54.84%), Query Frame = 0 
Query:    1 MMSSNQPSKYYGCFGECFSLGIQTFAYIPRH 31
            + +S  P+  Y C  +C+SLG+  +  I  H
Sbjct:  731 LSNSKVPNTMYSCKSDCWSLGVVLYMLISGH 823
[Close]
BLAST of EMLSAG00000002949 vs. C. finmarchicus
Match: gi|592776412|gb|GAXK01178156.1| (TSA: Calanus finmarchicus comp14689_c4_seq11 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 4.119e+0
Identity = 10/31 (32.26%), Postives = 17/31 (54.84%), Query Frame = 0 
Query:    1 MMSSNQPSKYYGCFGECFSLGIQTFAYIPRH 31
            + +S  P+  Y C  +C+SLG+  +  I  H
Sbjct:  731 LSNSKVPNTMYSCKSDCWSLGVVLYMLISGH 823
[Close]
BLAST of EMLSAG00000002949 vs. C. finmarchicus
Match: gi|592850768|gb|GAXK01106776.1| (TSA: Calanus finmarchicus comp37852_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 25.7942 bits (55), Expect = 8.265e+0
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 0 
Query:   21 GIQTFAYIPRHLSIFFPLSQGS 42
            GI TF + P  L +FFP+S G+
Sbjct:  363 GILTFPFSPICLKVFFPISSGA 428
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BLAST of EMLSAG00000002949 vs. C. finmarchicus
Match: gi|592833003|gb|GAXK01124541.1| (TSA: Calanus finmarchicus comp25007_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 8.492e+0
Identity = 12/17 (70.59%), Postives = 14/17 (82.35%), Query Frame = 0 
Query:   32 LSIFFPLSQGSRNFFLA 48
            LS   PL+QGSRNFFL+
Sbjct:  481 LSTSQPLNQGSRNFFLS 531
[Close]
BLAST of EMLSAG00000002949 vs. L. salmonis peptides
Match: EMLSAP00000002949 (pep:novel supercontig:LSalAtl2s:LSalAtl2s16976:2:735:1 gene:EMLSAG00000002949 transcript:EMLSAT00000002949 description:"maker-LSalAtl2s16976-augustus-gene-0.0")

HSP 1 Score: 115.931 bits (289), Expect = 1.374e-35
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 
Query:    1 MMSSNQPSKYYGCFGECFSLGIQTFAYIPRHLSIFFPLSQGSRNFFLALLQKNLMM 56
            MMSSNQPSKYYGCFGECFSLGIQTFAYIPRHLSIFFPLSQGSRNFFLALLQKNLMM
Sbjct:    1 MMSSNQPSKYYGCFGECFSLGIQTFAYIPRHLSIFFPLSQGSRNFFLALLQKNLMM 56
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002949 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002949 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 6
Match NameE-valueIdentityDescription
gi|592803452|gb|GAXK01151116.1|1.055e+054.84TSA: Calanus finmarchicus comp5465164_c0_seq1 tran... [more]
gi|592776410|gb|GAXK01178158.1|4.079e+032.26TSA: Calanus finmarchicus comp14689_c4_seq13 trans... [more]
gi|592776411|gb|GAXK01178157.1|4.080e+032.26TSA: Calanus finmarchicus comp14689_c4_seq12 trans... [more]
gi|592776412|gb|GAXK01178156.1|4.119e+032.26TSA: Calanus finmarchicus comp14689_c4_seq11 trans... [more]
gi|592850768|gb|GAXK01106776.1|8.265e+050.00TSA: Calanus finmarchicus comp37852_c1_seq1 transc... [more]
gi|592833003|gb|GAXK01124541.1|8.492e+070.59TSA: Calanus finmarchicus comp25007_c6_seq1 transc... [more]
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BLAST of EMLSAG00000002949 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000029491.374e-35100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s16976:2:7... [more]
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BLAST of EMLSAG00000002949 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002949 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002949 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002949 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s16976supercontigLSalAtl2s16976:2..735 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s16976-augustus-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002949 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002949EMLSAT00000002949-698796Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s16976:2..735+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002949-685715 ID=EMLSAG00000002949-685715|Name=EMLSAG00000002949|organism=Lepeophtheirus salmonis|type=gene|length=734bp|location=Sequence derived from alignment at LSalAtl2s16976:2..735+ (Lepeophtheirus salmonis)
ATTAATTCTGAGTCTATCGTGGTTAGTGATGTGCCTTTGGATGTTTCGTC
GATCGTAAACGTTGAATCGAGGTGAGTAAGTACCCAACCAGAATCGAATA
AAATAAATGCTCCTCCTATTGATGATTGATGGGTTTTGGATTAGGCAAAT
AATTCATGGGTTGATTTTTATTTAAAGATTGTCTCTGTATGTCTGGGCTA
TTTTTCAAATTTCATTTTAATGTTGTTATTCTTCAGGTCTCTTGAACGGG
ATGAAGCCCCATGGATGAGTGAAACGGAATAGGAAATCGGGATGGAGATA
ATTCTCGTGAAAAGTTTATCTACAGGAACTCCTTTGAAACGCAGTGAGTT
CGTTAATTTTGAATAGAGTTGACATAAAGAATAAAATAGAGGTGACAAGG
ATGTTTACTTGGACACTTGTCTTTGTTAGGTAGACATAGAATTCATATTC
TGATTTTGAAATGTTTTAGGCGTCTATTTTAGATGATCTATTAGTAGATG
ATGAGTTCAAATCAACCTAGCAAATATTATGGGTGTTTTGGCGAATGCTT
TTCGCTGGGTATTCAAACTTTTGCCTACATACCTCGTCACCTCTCTATTT
TTTTCCCTCTATCACAGGGGTCGCGTAACTTTTTTTTAGCATTACTCCAA
AAGAACTTGATGATGTAATATTAATTTCCCCGAAGTAGTGAAGGGGTGTC
CACAGAATAATATATATACGAGGTATGTTCAAAA
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