EMLSAG00000003958, EMLSAG00000003958-686724 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003958 vs. C. finmarchicus
Match: gi|592878499|gb|GAXK01079402.1| (TSA: Calanus finmarchicus comp2289241_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 5.486e+0 Identity = 17/48 (35.42%), Postives = 26/48 (54.17%), Query Frame = 0 Query: 93 EGSWRSVHNAIPTL--FEHVKIKNKSKLPFNRNDAEELQKEQRILMLE 138 E W+ V N + L F I N + FN+NDA+ L+K +R+ +E Sbjct: 146 ESKWQKVGNFLFYLLCFPVAFISNCVWIIFNQNDAQSLEKSRRLFGME 289
BLAST of EMLSAG00000003958 vs. C. finmarchicus
Match: gi|592921617|gb|GAXK01036758.1| (TSA: Calanus finmarchicus comp406092_c0_seq8 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 7.680e+0 Identity = 19/60 (31.67%), Postives = 27/60 (45.00%), Query Frame = 0 Query: 136 MLEHSYAKTDGTSNKEDYLDHEAQTPFSLDIFKQDAPEIEVLTYVPSSSNCINFVAANKS 195 M+ H +K D+ EAQ + L I AP+ E T VP++ N + A KS Sbjct: 704 MMTHGSSKPKQCVECTDFFPDEAQLRYHLMIKHNQAPDQEQPTPVPTTVNTMPKATARKS 883
BLAST of EMLSAG00000003958 vs. C. finmarchicus
Match: gi|592921619|gb|GAXK01036756.1| (TSA: Calanus finmarchicus comp406092_c0_seq6 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 7.765e+0 Identity = 19/60 (31.67%), Postives = 27/60 (45.00%), Query Frame = 0 Query: 136 MLEHSYAKTDGTSNKEDYLDHEAQTPFSLDIFKQDAPEIEVLTYVPSSSNCINFVAANKS 195 M+ H +K D+ EAQ + L I AP+ E T VP++ N + A KS Sbjct: 704 MMTHGSSKPKQCVECTDFFPDEAQLRYHLMIKHNQAPDQEQPTPVPTTVNTMPKATARKS 883
BLAST of EMLSAG00000003958 vs. C. finmarchicus
Match: gi|592921621|gb|GAXK01036754.1| (TSA: Calanus finmarchicus comp406092_c0_seq4 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 7.903e+0 Identity = 19/60 (31.67%), Postives = 27/60 (45.00%), Query Frame = 0 Query: 136 MLEHSYAKTDGTSNKEDYLDHEAQTPFSLDIFKQDAPEIEVLTYVPSSSNCINFVAANKS 195 M+ H +K D+ EAQ + L I AP+ E T VP++ N + A KS Sbjct: 913 MMTHGSSKPKQCVECTDFFPDEAQLRYHLMIKHNQAPDQEQPTPVPTTVNTMPKATARKS 1092
BLAST of EMLSAG00000003958 vs. C. finmarchicus
Match: gi|592921623|gb|GAXK01036752.1| (TSA: Calanus finmarchicus comp406092_c0_seq2 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 7.967e+0 Identity = 19/60 (31.67%), Postives = 27/60 (45.00%), Query Frame = 0 Query: 136 MLEHSYAKTDGTSNKEDYLDHEAQTPFSLDIFKQDAPEIEVLTYVPSSSNCINFVAANKS 195 M+ H +K D+ EAQ + L I AP+ E T VP++ N + A KS Sbjct: 913 MMTHGSSKPKQCVECTDFFPDEAQLRYHLMIKHNQAPDQEQPTPVPTTVNTMPKATARKS 1092
BLAST of EMLSAG00000003958 vs. L. salmonis peptides
Match: EMLSAP00000003958 (pep:novel supercontig:LSalAtl2s:LSalAtl2s211:860531:863176:-1 gene:EMLSAG00000003958 transcript:EMLSAT00000003958 description:"snap-LSalAtl2s211-processed-gene-9.79") HSP 1 Score: 456.062 bits (1172), Expect = 2.370e-164 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0 Query: 1 MNCNLHSGSINLLLCTTLEQDLDKRLRNNTVYCNNRSTLTRKLLGLSPKKMFNFPNDINRRKLWINAIKRTNWNPTKGLRILPKSMFLPKFLEGSWRSVHNAIPTLFEHVKIKNKSKLPFNRNDAEELQKEQRILMLEHSYAKTDGTSNKEDYLDHEAQTPFSLDIFKQDAPEIEVLTYVPSSSNCINFVAANKSLSAKIKFLASETCQEQGFNNVKLKNQ 221 MNCNLHSGSINLLLCTTLEQDLDKRLRNNTVYCNNRSTLTRKLLGLSPKKMFNFPNDINRRKLWINAIKRTNWNPTKGLRILPKSMFLPKFLEGSWRSVHNAIPTLFEHVKIKNKSKLPFNRNDAEELQKEQRILMLEHSYAKTDGTSNKEDYLDHEAQTPFSLDIFKQDAPEIEVLTYVPSSSNCINFVAANKSLSAKIKFLASETCQEQGFNNVKLKNQ Sbjct: 1 MNCNLHSGSINLLLCTTLEQDLDKRLRNNTVYCNNRSTLTRKLLGLSPKKMFNFPNDINRRKLWINAIKRTNWNPTKGLRILPKSMFLPKFLEGSWRSVHNAIPTLFEHVKIKNKSKLPFNRNDAEELQKEQRILMLEHSYAKTDGTSNKEDYLDHEAQTPFSLDIFKQDAPEIEVLTYVPSSSNCINFVAANKSLSAKIKFLASETCQEQGFNNVKLKNQ 221
BLAST of EMLSAG00000003958 vs. L. salmonis peptides
Match: EMLSAP00000010152 (pep:novel supercontig:LSalAtl2s:LSalAtl2s670:191345:193201:1 gene:EMLSAG00000010152 transcript:EMLSAT00000010152 description:"snap-LSalAtl2s670-processed-gene-2.40") HSP 1 Score: 214.157 bits (544), Expect = 8.689e-70 Identity = 120/175 (68.57%), Postives = 131/175 (74.86%), Query Frame = 0 Query: 31 VYCNNRSTLTRKLLGLSPKKMFNFPNDINRRKLWINAIKRTNWNPTKGLRI----LPKSMFLPKFLEGSWRSVHNAIPTLFEHVKIKNKSKLPFNRN-DAEELQKEQRILMLEHSYAKTDGTSNKEDYLDHEAQTPFSLDIFKQDAPEIEVLTYVPSSSNCINFVAANKSLSAKI 200 V NNRSTL +K GLSP+KMFNFP DIN RKL INAIKRTNW P K R+ +S+FL K +G W VHNAIPTLFEHVKIKNK KL FNRN DAEELQ++QRIL+ S GTSNKEDY DHEAQTPFS DIF Q+APEIEVL YVP SN +N AANKSLSAKI Sbjct: 15 VSYNNRSTLNKKFPGLSPRKMFNFPKDINGRKLRINAIKRTNWTPNKDSRVSQAHFEESIFLLKSSKGRWCLVHNAIPTLFEHVKIKNKRKLLFNRNRDAEELQRKQRILITSTS----QGTSNKEDYPDHEAQTPFSSDIFIQEAPEIEVLAYVP-CSNSMNLGAANKSLSAKI 184
BLAST of EMLSAG00000003958 vs. L. salmonis peptides
Match: EMLSAP00000009408 (pep:novel supercontig:LSalAtl2s:LSalAtl2s5:396037:397780:1 gene:EMLSAG00000009408 transcript:EMLSAT00000009408 description:"augustus-LSalAtl2s5-processed-gene-4.4") HSP 1 Score: 197.208 bits (500), Expect = 1.115e-61 Identity = 110/184 (59.78%), Postives = 135/184 (73.37%), Query Frame = 0 Query: 29 NTVYCNNRSTLTRKLLGLSPKKMFNFPNDINRRKLWINAIKRTNWNPTKGLRI----LPKSMFLPKFLEGSWRSVHNAIPTLFEHVKIKNKSKLPFNRN-DAEELQKEQRILMLEHSYAKTDGTSNKED--YLDHEAQTPFSLDIFKQDAPEIEVLTYVPSSSNCINFVAANKSLSAKIKFLAS 205 + V+CNNRS+ +K P KMFNFP DI+RRKLWINA+KR+NW PT R+ +SMFL K EG WR VH+A+PTLF+H KIK K K PFNRN DAEEL ++Q+I++LEHSYAKT+G SNKED Y DHE ++P S D+F Q+APEIEV TYVP S CIN V NK LS+KI+ L + Sbjct: 5 SAVHCNNRSSTLKKSPDSLPMKMFNFPKDIHRRKLWINAMKRSNWTPTDNSRVCQVHFEESMFLRKSSEGRWRLVHDAVPTLFKHTKIKKKRKPPFNRNKDAEELLRKQKIILLEHSYAKTNGESNKEDDPYTDHEVKSPTSSDVFVQEAPEIEVKTYVP-CSKCINLVYGNKYLSSKIQKLQA 187
BLAST of EMLSAG00000003958 vs. L. salmonis peptides
Match: EMLSAP00000009962 (pep:novel supercontig:LSalAtl2s:LSalAtl2s64:766665:768386:1 gene:EMLSAG00000009962 transcript:EMLSAT00000009962 description:"snap-LSalAtl2s64-processed-gene-7.21") HSP 1 Score: 191.815 bits (486), Expect = 1.664e-60 Identity = 105/188 (55.85%), Postives = 128/188 (68.09%), Query Frame = 0 Query: 29 NTVYCNNRSTLTRKLLGLSPKKMFNFPNDINRRKLWINAIKRTNWNPTKGLRI----LPKSMFLPKFLEGSWRSVHNAIPTLFEHVKIKNKSKLPFNRN-DAEELQKEQRILMLEHSYAKTDGTSNKEDYL--DHEAQTPFSLDIFKQDAPEIEVLTYVPSSSNCINFVAANKSLSAKIKFLASETCQ 209 + V C NRS +K G S KMF+FP DI R+KLWINAIKR NW PT R+ +SMFL K +EG WR VH+AIPTLF+H K KN+ KLP NRN DAEEL K+QR L EHSY K SNKED D++ + P DIF Q+APEIEV+T+VP SNCIN +AANK LSAK++ L ++ + Sbjct: 5 SAVCCKNRSATDKKSPGFSSMKMFSFPKDIQRKKLWINAIKRANWTPTNNSRVCQAHFEESMFLRKSVEGRWRLVHDAIPTLFQHSKKKNERKLPLNRNKDAEELLKKQRFLFSEHSYTKDPWLSNKEDDSDPDNDVKRPILSDIFIQEAPEIEVITHVP-CSNCINLLAANKFLSAKVRNLQAKIAK 191
BLAST of EMLSAG00000003958 vs. L. salmonis peptides
Match: EMLSAP00000009860 (pep:novel supercontig:LSalAtl2s:LSalAtl2s63:321294:323961:1 gene:EMLSAG00000009860 transcript:EMLSAT00000009860 description:"augustus-LSalAtl2s63-processed-gene-3.4") HSP 1 Score: 106.686 bits (265), Expect = 2.445e-27 Identity = 74/193 (38.34%), Postives = 97/193 (50.26%), Query Frame = 0 Query: 31 VYCNNRSTLTRKLLGLSPKKMFNFPNDINRRKLWINAIKRTNWNPTKGLRI----LPKSMFLPKFLEGSWRSVHNAIPTLFEHVKIKNKSKLPFNRNDAEE-LQKEQRILMLEHSYAK----TDGTSNKEDYLDHEAQTPF------SLDIFKQDAPE---IEVLTYVPS------SSNCINFVAANKSLSAK 199 + C N+S ++ G SP +MF+FP D RRK+W N IKR NW PT R+ + MF + +EG W H+AIPTLF H+K KN K P NRN AEE ++ + L+HSY K T T+ D + E ++ F L F A E EV+ S SNC N NK+L AK Sbjct: 7 INCKNKSATHKRTPGSSPARMFSFPKDKTRRKVWANTIKRANWTPTDHSRLCDAHFEERMFRRRPVEGRWLLKHDAIPTLFGHIKRKNIRKPPLNRNSAEEAFERNKSTFALDHSYNKPFSMTTTTTLNHDKEEVEEESVFIDQPCDKLSTFHDLALEEVSEEVVIQNDSLNTSVLCSNCQNVGTINKALVAK 199
BLAST of EMLSAG00000003958 vs. L. salmonis peptides
Match: EMLSAP00000012399 (pep:novel supercontig:LSalAtl2s:LSalAtl2s908:138075:138772:-1 gene:EMLSAG00000012399 transcript:EMLSAT00000012399 description:"augustus-LSalAtl2s908-processed-gene-1.13") HSP 1 Score: 95.5153 bits (236), Expect = 3.423e-24 Identity = 50/77 (64.94%), Postives = 57/77 (74.03%), Query Frame = 0 Query: 136 MLEHSYAKTDGTSNKEDYLDHEAQTPFSLDIFKQDAPEIEVLTYVPSSSNCINFVAANKSLSAKIKFLASETCQEQG 212 M +HSY KT SNKEDY DHEAQTP SLDIF Q+APEIE LTYV SN IN V ANKSLSAKI+ L ++ +E+ Sbjct: 1 MFQHSYVKTHEKSNKEDYPDHEAQTPLSLDIFIQEAPEIEALTYV-LCSNRINLVVANKSLSAKIQHLQAKLAREKA 76
BLAST of EMLSAG00000003958 vs. L. salmonis peptides
Match: EMLSAP00000008125 (pep:novel supercontig:LSalAtl2s:LSalAtl2s483:16257:17117:-1 gene:EMLSAG00000008125 transcript:EMLSAT00000008125 description:"snap-LSalAtl2s483-processed-gene-0.14") HSP 1 Score: 95.5153 bits (236), Expect = 4.855e-24 Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 0 Query: 136 MLEHSYAKTDGTSNKEDYLDHEAQTPFSLDIFKQDAPEIEVLTYVPSSSNCINFVAANKSLSAKIKFLASE 206 M+EHSYAKT GTSNKEDY HEAQ F DIF Q+APEIEVL+YVP SNCIN V N+SLSAKI+ L ++ Sbjct: 1 MIEHSYAKTHGTSNKEDYSYHEAQNSFLSDIFIQEAPEIEVLSYVP-CSNCINLVVTNESLSAKIQNLEAK 70
BLAST of EMLSAG00000003958 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold100_size373717-snap-gene-2.42 (protein:Tk05137 transcript:maker-scaffold100_size373717-snap-gene-2.42-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC755078") HSP 1 Score: 56.6102 bits (135), Expect = 9.121e-10 Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 0 Query: 47 SPK-KMFNFPNDINRRKLWINAIKRTNWNPTKGLRI----LPKSMFLPKFLEGSWRSVHNAIPTLFEHVKIKNKSKLPFNRNDAEELQKEQRILMLEHSYAK 143 SPK +F FP D + +WI I R++W P+K R+ SMF K G W +NAIPT+F+ VK ++ L R + + L+ EHSY++ Sbjct: 13 SPKYHLFRFPPDSRLKDMWIRHINRSSWTPSKHDRVCNTHFEPSMFNRKGEGGRWLIKYNAIPTIFDQVKPRSVKSL---RRGKAGVGFDPLTLVDEHSYSQ 111
BLAST of EMLSAG00000003958 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold63_size435493-snap-gene-3.28 (protein:Tk00834 transcript:maker-scaffold63_size435493-snap-gene-3.28-mRNA-1 annotation:"thap domain-containing protein 4") HSP 1 Score: 55.4546 bits (132), Expect = 1.758e-9 Identity = 43/139 (30.94%), Postives = 63/139 (45.32%), Query Frame = 0 Query: 51 MFNFPNDINRRKLWINAIKRTNWNPTKGLRI----LPKSMFLPKFLEGSWRSVHNAIPTLFEHVKIKNKSKLPFNRNDAE-ELQKEQRI--------LMLEHSYAKTD-----GTSNKEDYLDHEAQ-----TPFSLDI 166 ++ FP D RR+LW + R W P+ +I SMF K G WR +A+PTLF+H + K+ K P R E EL E +I + L+H Y+ T+ K D + A+ P ++DI Sbjct: 18 LYRFPRDQARRRLWGVRVGRDKWTPSNHSKICRVHFEDSMFEWKSDLGQWRLKKDAVPTLFKHKRFKSVRKKPTPRPCKEWELAHEAQIRRRMALMGVKLDHCYSTHQSPVLVSTTKKVDVVVKPAECFNDDIPIAMDI 156
BLAST of EMLSAG00000003958 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold7584_size3104-snap-gene-0.1 (protein:Tk09948 transcript:maker-scaffold7584_size3104-snap-gene-0.1-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC755078") HSP 1 Score: 48.521 bits (114), Expect = 4.749e-7 Identity = 33/104 (31.73%), Postives = 54/104 (51.92%), Query Frame = 0 Query: 51 MFNFPNDINRRKLWINAIKRTNWNPTKGLRILPKSMFLPKF---LEGSWRSVHNAIPTLFEHVKIKNKSKLPFNRNDAEELQKEQRILM----LEHSYAK-TDG 146 M+ FP + +RRKLW + +KR ++ PT + +F ++G R NA+PT F H+K+ + P R A Q E +L+ +H+YA+ +DG Sbjct: 19 MYKFPLNPDRRKLWASKVKRESFKPTNNSFLCEDHFTKEQFIVNMKGQSRLKQNAVPTQFSHLKVSKPRRPPRVRLQA---QWETNLLLERVITDHNYAENSDG 119 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003958 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003958 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 5
BLAST of EMLSAG00000003958 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 7
BLAST of EMLSAG00000003958 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003958 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003958 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003958 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 3
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s211:860531..863176- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003958-686724 ID=EMLSAG00000003958-686724|Name=EMLSAG00000003958|organism=Lepeophtheirus salmonis|type=gene|length=2646bp|location=Sequence derived from alignment at LSalAtl2s211:860531..863176- (Lepeophtheirus salmonis)back to top Add to Basket
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