EMLSAG00000004268, EMLSAG00000004268-687034 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000004268 vs. L. salmonis peptides
Match: EMLSAP00000004268 (pep:novel supercontig:LSalAtl2s:LSalAtl2s223:77:757:-1 gene:EMLSAG00000004268 transcript:EMLSAT00000004268 description:"maker-LSalAtl2s223-snap-gene-0.10") HSP 1 Score: 239.195 bits (609), Expect = 5.035e-82 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query: 1 MSTTTSSADTSAETGLDNSTPALTSEINQNINSENNAGRFSSPSFGSNAQAATNGLYRSITNNNAGASIASTGVNNSVNNAEGHSSPSFGSNVQSATNGLYRSQNNDYLRNPISSSGVNLNSQNSL 126
MSTTTSSADTSAETGLDNSTPALTSEINQNINSENNAGRFSSPSFGSNAQAATNGLYRSITNNNAGASIASTGVNNSVNNAEGHSSPSFGSNVQSATNGLYRSQNNDYLRNPISSSGVNLNSQNSL
Sbjct: 1 MSTTTSSADTSAETGLDNSTPALTSEINQNINSENNAGRFSSPSFGSNAQAATNGLYRSITNNNAGASIASTGVNNSVNNAEGHSSPSFGSNVQSATNGLYRSQNNDYLRNPISSSGVNLNSQNSL 126
BLAST of EMLSAG00000004268 vs. L. salmonis peptides
Match: EMLSAP00000010314 (pep:novel supercontig:LSalAtl2s:LSalAtl2s6833:1:1974:1 gene:EMLSAG00000010314 transcript:EMLSAT00000010314 description:"augustus_masked-LSalAtl2s6833-processed-gene-0.1") HSP 1 Score: 108.227 bits (269), Expect = 6.616e-29 Identity = 75/160 (46.88%), Postives = 88/160 (55.00%), Query Frame = 0
Query: 20 TPALTSEINQNINSENNAGRFSSPSFGSNAQAATNGLYRSITNNNAGASIASTGVN-----------------------------------------------------NSVNNAEGHSSPSFGSNVQSATNGLYRSQNNDYLRNPISSSGVNLNSQNSL 126
+P SEI+Q NS NNA FSSPSFGSN Q+ATNGLYRS TN G ++STG+N NSVNNA G+SSPSFGSNVQSATNGLYRSQ N+Y +P+SS+GVNLN++NSL
Sbjct: 171 SPLTNSEISQKQNSVNNAAGFSSPSFGSNVQSATNGLYRSHTNY-PGTPLSSTGINVNNQNDLISQSNSPSYRSIGINVNNQNDLISQSNSPSYRSIGPIDNSEISQKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNNYPESPMSSTGVNLNNKNSL 329 HSP 2 Score: 85.1149 bits (209), Expect = 1.411e-20 Identity = 57/110 (51.82%), Postives = 65/110 (59.09%), Query Frame = 0
Query: 21 PALTSEINQNINSENNAGRFSSPSFGSNAQAATNGLYRSITNNNAGASIASTGVN-------------------------------NSVNNAEGHSSPSFGSNVQSATNG 99
P SEI+Q NS NNAG +SSPSFGSN Q+ATNGLYRS TNN + ++STGVN NS+NNA G+SSPSFGSNVQSATNG
Sbjct: 268 PIDNSEISQKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNNYPESPMSSTGVNLNNKNSLVSQSNSPSYRSHGPVANLEVSQNQNSLNNAGGYSSPSFGSNVQSATNG 377 HSP 3 Score: 68.9366 bits (167), Expect = 1.047e-14 Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 0
Query: 76 NSVNNAEGHSSPSFGSNVQSATNGLYRSQNNDYLRNPISSSGVNLNSQNSL 126
NS+NNA+G+SSPSFG NVQS TN L+R Q N++ NP+SS+GVNLN QNSL
Sbjct: 108 NSLNNAKGNSSPSFGDNVQSGTNSLFRRQTNNFPENPLSSTGVNLNIQNSL 158
BLAST of EMLSAG00000004268 vs. L. salmonis peptides
Match: EMLSAP00000010553 (pep:novel supercontig:LSalAtl2s:LSalAtl2s7003:1391:3379:1 gene:EMLSAG00000010553 transcript:EMLSAT00000010553 description:"maker-LSalAtl2s7003-snap-gene-0.2") HSP 1 Score: 92.0485 bits (227), Expect = 6.338e-24 Identity = 62/123 (50.41%), Postives = 71/123 (57.72%), Query Frame = 0
Query: 21 PALTSEINQNINSENNAGRFSSPSFGSNAQAATNGLYRSITNNNAGASIASTGVN-------------------------------NSVNNAEGHSSPSFGSNVQSATNGLYRSQNNDYLRNP 112
P SEI+Q NS N+AG +SSPSFGSN Q+A NGLYRS TN + STG+N NSVNNA G+SSPSFGSNVQSATNGLYRSQ N++ NP
Sbjct: 72 PIDNSEISQKQNSVNSAGGYSSPSFGSNVQSAANGLYRSRTNYSPVNPSTSTGINVNNRNDLVSQSNSPSYRSIGPTDNSEILQKQNSVNNAGGYSSPSFGSNVQSATNGLYRSQTNNFPGNP 194 HSP 2 Score: 60.4622 bits (145), Expect = 1.529e-12 Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 0
Query: 76 NSVNNAEGHSSPSFGSNVQSATNGLYRSQNNDYLRNPISSSGVNLNSQNSL 126
NSVN+A G+SSPSFGSNVQSA NGLYRS+ N NP +S+G+N+N++N L
Sbjct: 83 NSVNSAGGYSSPSFGSNVQSAANGLYRSRTNYSPVNPSTSTGINVNNRNDL 133
BLAST of EMLSAG00000004268 vs. L. salmonis peptides
Match: EMLSAP00000009194 (pep:novel supercontig:LSalAtl2s:LSalAtl2s583:258140:262233:-1 gene:EMLSAG00000009194 transcript:EMLSAT00000009194 description:"maker-LSalAtl2s583-snap-gene-1.41") HSP 1 Score: 48.9062 bits (115), Expect = 1.990e-8 Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 0
Query: 48 NAQAATNGLYRSITNNNAGASIASTGVN-------------------NSVNNAE------------GHSSPSFGSNVQSATNGLYRSQNNDYLRNPISSSGVNLNSQNSL 126
N Q+ATN LYRSI+NNNAGASI+S+GVN V+N+E + SP + V S ++G+ + +Y +P+SS+GVNLN+QN L
Sbjct: 14 NVQSATNALYRSISNNNAGASISSSGVNINNQNEFVNKQNSPYYRSTRPVSNSEINQNQNSANNAGDYFSPKHNNKVISVSSGISKK---NY--SPMSSNGVNLNNQNHL 118 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004268 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004268 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 0
BLAST of EMLSAG00000004268 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 4
BLAST of EMLSAG00000004268 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004268 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000004268 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004268 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s223:77..757- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004268-687034 ID=EMLSAG00000004268-687034|Name=EMLSAG00000004268|organism=Lepeophtheirus salmonis|type=gene|length=681bp|location=Sequence derived from alignment at LSalAtl2s223:77..757- (Lepeophtheirus salmonis)back to top Add to Basket
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