EMLSAG00000004358, EMLSAG00000004358-687124 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000004358
Unique Name	EMLSAG00000004358-687124
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Homology

[Close]

BLAST of EMLSAG00000004358 vs. C. finmarchicus
Match: gi|592948683|gb|GAXK01009870.1| (TSA: Calanus finmarchicus comp5205122_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.458e+0
Identity = 19/67 (28.36%), Postives = 29/67 (43.28%), Query Frame = 0

Query:   11 YPDILLARTFDRLKTIEDLKE----VFLESET--------------LIFIDEESPRIASGEGFKQIC 59
            +PD L+ R  DR   +ED+KE    + ++ ET               +  +E  PRI  G  F  +C
Sbjct:  199 HPDDLVKRIIDRYDILEDVKEEAVQLRIDQETTVMKRGTVLASLYDAVMYEEGDPRIYHGRLFSSVC 399

[Close]

BLAST of EMLSAG00000004358 vs. C. finmarchicus
Match: gi|592891440|gb|GAXK01066935.1| (TSA: Calanus finmarchicus comp5364_c22_seq33 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 5.941e+0
Identity = 17/63 (26.98%), Postives = 31/63 (49.21%), Query Frame = 0

Query:    7 LREIYPDILLARTFDRLKTIEDLKEVFLESETLIFIDEESPRIASGEGFKQICEKIANTLTVL 69
            +R +   + LA TFD+ + ++D     ++ E L    EE+     G    ++CEK+ N  + L
Sbjct:  238 MRIMESSVELAETFDKNEEMKDEISTSIDDEDLHLHTEETMEKNEGLWKCKVCEKMYNNKSSL 426

[Close]

BLAST of EMLSAG00000004358 vs. C. finmarchicus
Match: gi|592891247|gb|GAXK01067128.1| (TSA: Calanus finmarchicus comp5364_c96_seq90 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 6.911e+0
Identity = 17/63 (26.98%), Postives = 31/63 (49.21%), Query Frame = 0

Query:    7 LREIYPDILLARTFDRLKTIEDLKEVFLESETLIFIDEESPRIASGEGFKQICEKIANTLTVL 69
            +R +   + LA TFD+ + ++D     ++ E L    EE+     G    ++CEK+ N  + L
Sbjct:  121 MRIMESSVELAETFDKNEEMKDEISTSIDDEDLHLHTEETMEKNEGLWKCKVCEKMYNNKSSL 309

[Close]

BLAST of EMLSAG00000004358 vs. C. finmarchicus
Match: gi|592891443|gb|GAXK01066932.1| (TSA: Calanus finmarchicus comp5364_c22_seq30 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 7.320e+0
Identity = 17/63 (26.98%), Postives = 31/63 (49.21%), Query Frame = 0

Query:    7 LREIYPDILLARTFDRLKTIEDLKEVFLESETLIFIDEESPRIASGEGFKQICEKIANTLTVL 69
            +R +   + LA TFD+ + ++D     ++ E L    EE+     G    ++CEK+ N  + L
Sbjct:  238 MRIMESSVELAETFDKNEEMKDEISTSIDDEDLHLHTEETMEKNEGLWKCKVCEKMYNNKSSL 426

[Close]

BLAST of EMLSAG00000004358 vs. L. salmonis peptides
Match: EMLSAP00000004358 (pep:novel supercontig:LSalAtl2s:LSalAtl2s229:633232:637858:-1 gene:EMLSAG00000004358 transcript:EMLSAT00000004358 description:"maker-LSalAtl2s229-snap-gene-6.21")

HSP 1 Score: 205.682 bits (522), Expect = 1.624e-69
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query:    1 MDKFQFLREIYPDILLARTFDRLKTIEDLKEVFLESETLIFIDEESPRIASGEGFKQICEKIANTLTVLGGRDYIEFIKCLGFKYAAVPFTRKSSHIRKRKI 102
            MDKFQFLREIYPDILLARTFDRLKTIEDLKEVFLESETLIFIDEESPRIASGEGFKQICEKIANTLTVLGGRDYIEFIKCLGFKYAAVPFTRKSSHIRKRKI
Sbjct:    1 MDKFQFLREIYPDILLARTFDRLKTIEDLKEVFLESETLIFIDEESPRIASGEGFKQICEKIANTLTVLGGRDYIEFIKCLGFKYAAVPFTRKSSHIRKRKI 102

The following BLAST results are available for this feature:

BLAST of EMLSAG00000004358 vs. GO
BLAST of EMLSAG00000004358 vs. C. finmarchicus
BLAST of EMLSAG00000004358 vs. L. salmonis peptides
BLAST of EMLSAG00000004358 vs. SwissProt
BLAST of EMLSAG00000004358 vs. Select Arthropod Genomes
BLAST of EMLSAG00000004358 vs. nr
BLAST of EMLSAG00000004358 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000004358 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000004358 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4


Match Name	E-value	Identity	Description
gi\|592948683\|gb\|GAXK01009870.1\|	3.458e+0	28.36	TSA: Calanus finmarchicus comp5205122_c0_seq1 tran...	[more]
gi\|592891440\|gb\|GAXK01066935.1\|	5.941e+0	26.98	TSA: Calanus finmarchicus comp5364_c22_seq33 trans...	[more]
gi\|592891247\|gb\|GAXK01067128.1\|	6.911e+0	26.98	TSA: Calanus finmarchicus comp5364_c96_seq90 trans...	[more]
gi\|592891443\|gb\|GAXK01066932.1\|	7.320e+0	26.98	TSA: Calanus finmarchicus comp5364_c22_seq30 trans...	[more]

BLAST of EMLSAG00000004358 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1


Match Name	E-value	Identity	Description
EMLSAP00000004358	1.624e-69	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s229:63323...	[more]

BLAST of EMLSAG00000004358 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000004358 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000004358 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of EMLSAG00000004358 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s229	supercontig	LSalAtl2s229:633232..637858 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	maker-LSalAtl2s229-snap-gene-6.21
Biotype	protein_coding
Evidence	IEA
Note	Hypothetical protein

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000004358 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000004358	EMLSAT00000004358-700205	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s229:633232..637858-

gene from alignment at LSalAtl2s229:633232..637858-

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000004358-687124 ID=EMLSAG00000004358-687124|Name=EMLSAG00000004358|organism=Lepeophtheirus salmonis|type=gene|length=4627bp|location=Sequence derived from alignment at LSalAtl2s229:633232..637858- (Lepeophtheirus salmonis)
ATGGATAAATTCCAATTTCTGAGAGAAATATATCCAGATATATTACTAGC
AAGAACGTTTGATCGATTAAAAACTATTGAGGATTTGAAGGAAGTGTTTT
TGGAGTCGGAAACCTTGATTTTTATCGATGAAGAGTCTCCCAGGTTTCAG
AGTTTTATTATTTTCCCCTAAAATCATATGATATCGTTTAATTTCCGTAG
AATCGCTTCAGGTGAGGGATTTAAACAAATTTGTGAAAAAATAGCCAATA
CATTGACTGTACTGGGAGGACGGGACTATATTGAGTTCATCAAATGTTTG
GGTAAGATTTTTCATCATTTTTTGCTCTTACGGATTTATTAATTATATTA
TGTATAACAGGTTTCAAATATGCGGCAGTTCCGTTTACGAGGAAGTCTAG
TCACATCCGGAAAAGAGTTATTAAATGCTTAAATCAGCTCTCCAGTACTT
GCTCAGCTAACTTAAATTACTATCTAATCKTTGCTGACATTTTTTGCTTG
AGGAATAAATTTAAYGGACTCTACTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACTACATGTAC
AGTTTGCGAAAGCAAGCATGCATCATAACATATATAAATTKMWAACAAGT
TAACGAAGGGCAATAATACATTCATTGGTTTTTGAAAGAGCAGTTTTGGG
ACCTTCCTTTGTACGCCATTTATTTTTGGTTTCGTGATGTCATCGAAAAA
ACGTAGAATGCTTAGGTCCTGTTTGTGATGTGGTCAAGATTGTGGAAGTG
AACAGGTCCACTATTTTGAGGATAAGAAAGGTGTTTGAGGCTAATAGCAG
CTATGAACGGAAGCCTCGAAGTGAGGGCCACAAATAAAGCGATCGGAGAA
GTTCATGAGTGCCTTGGAAGACAGTCTTGTGGCAAATCCTCAAACCTGGA
TGTGCAAGCTCGCAAAAAGAAAAAAGAACCACGTTAGTGAAAGGGCAATC
ACGAATGCCGTGAAAGACATGGCCCTCAAGAGCCATGTCCACCAGAAACG
CCAGCTTATAATAGTGCGCCCTGTAAACACGCTCGATGCTACATGTAAGA
TTTAATTATTATGACTAAATTGATATTTCATAGATACAAAAGGATTCTTC
CTTATAGAGAAATTCATATCTAAGGCTCTGGTAGGGGTAGACTGGAGACT
GTTGGAACACTTTTTGCTATTAGCTCAACTAGTCGAAGCTTACTTGATTC
AAATACGCCAAAATTTAACAAATTTAATTTTAATCGTCTTGTACTGAAGC
GGGMATTCCGCTAATTAGTGGATTACCGATTAGCAGAATACCAAAATTGT
AAAAACGGACATCTCTAAATTTCATTTTTTCAAGTCATACTACTTTGAGT
AAATGATGTCCAATAGTGTATTGGTGTCACACAAACTTTATTCTTATTTA
GACTCCATAGATTCTTACTTACTTCCAGATAAACTCGTTCAGAAGACATC
ATATTTCAGCTTATAGACCGACTGTAGACCCAAATTTAATCGTTTTCAAA
TCGTGAATGGATTTTTTCGGTCTTGATATATAAATAGATATTATCGGTCT
CAATCAATGGACCAATTTTCTCACTTATCCTGATTTTTGAGTTGTACAAA
AATGATTTATGCGTCACATTAAGCTTTATATGACATTATTGTGCACATGA
TCACAATTTTAAAACACAAATGACGTCATCAGCCATTCATCATTAAACCG
TATATCTAAAATAATACAAAAATGAATTTTGAGAGTTGTTTTGTGATACT
TCAAAATGTATCAATCTGGAWAAGTAAGGAAAAGAGCAACTCCCTCCCCC
CCCCCCCCCAAAAAAAAACAACTTTTATTATTGTCTCTTCTAACCTTAGT
AGTATTATTATGAAAATAAAAAAATATTGTCTTATACACTTCAAATAGCA
TACCAACATATATGCATCTAAAAAACTGTCTAGATGAGAAGTCCATTTTT
TATTTACTTCAAAAAATCGAAATTTGCGAAGAAAATTGCAAAAAAACTTT
TTTGTTCTTATTTTGCAAAAAAATAGTTAATAGTATTTGTTTGAATTTTA
AAAGAAACACAAACCCACCAATATTTTTTTCATACTTGCAAAAACAAAAA
AGTTATGAAGAATAATGCTGTCAAAAATACCCATTCAAACACTTGTTCAT
TTTTGCAAATATTTCAAAAATTATATAATAAAATGTTCTGGAAATTGAAA
ATAGACGTACTTTTAAATTTAAGTCGACATTTTTTTTGCGCAAAAAGCAT
CGTCTTGTGGCATTTTTTCTTAAAAGACTTAAAATTGACGTTTTGATGAA
AAAATGGAGAAAAAAAAGAGAGAAAAAATGAAAAATTATTCAGAAAATGA
CAGATATCTCATTTTCTCATGAATTTTATTTATGTTCAAATTTATATGCA
AACCAATCTACAGACAAATTTCTACAAACTTTATTCTACAGTGTGATTCA
AAATGAGCCGTTTTTGGATTGTAGAAATAAAACCCATAAAATATTATATT
ATGGTCAAAACATTATTATGAACCGAAAAAACAATTATTTCTAGAAAATA
ATCCCCTTCATATGTTGGCCGCAACTGGCCTTTAAATGGTACATTCTTTC
GCACAAATTTTTGATGACGCGTTCGAGCATTGTGAATGGAATCTCACGAA
TAACTCTGTTAAACTCTTGTTTTCAATGGATGTAATGGATGTTCTTGATA
CAATTCGGGTTATTCTTCACCCCAAATACGGCAATTTTGCTTATTTACGT
AGCCATTGGGCCAGAAATGAGCCTCATCACTGAACAAAAGTTGGTGCAGA
AAAAACTGACTTTCTTGGATACGTTCAAGAGCCCATTCACTGAACACACG
ACGCAAACGAAGGTCCAGCGGCTTCGATTCTTGCACGAGGTGTATTTTGT
ATGCCTTTAACCCCAAATCTTTCTTCAAAATGCGCCAGGCTGTTGCATAC
GACAAGCCAAGTTGTTGAGAGCGGTGGCGAATCGATTATTCACGATCTTC
GGCTACACTCTCGGCTGTAAGTGGCCTACCAGACGACGGGACATCCCAAC
AAGTTACTACCCCTACAAATTTTTCGATTATTGTGCGAATTGGGGATTCT
GAAGGTCGATTATGTGGACCATAAGTTGGGTGTAATATGGAAAAAAACTT
CCTTCAATGAACGCTGATTTTCATAGTACAATTGAACAGTTTGTAACACG
TTGTTGTGGCGTATATCTTTCCATGAAGAATTGTAAAACAATACTGAGTA
AAAATGACGTATGAATTTGGCAGAACTCGTGCGCACCTGTCAAAAAATCC
CTAGTGGAAAACCCGCTCGTTTTGAATCACTCTTTATTTACTAATCCCAT
ATTTCATTCGAAGTTCATTTTTTTGCACTTGAAATAAATGAAATTGCAAT
TTCCAGTCATTTTTTTTTTTTTTGTCATAACTTCTTTGATTTTGATTAAA
TTTAGAAAACGTAGTTATTCGTATAGTTGTTATCGAAACATTTTGAGCTT
CAAAAAAAGGTTTTTGGGTTATGGGTATATCATAAGCCCCCCCCCCTATT
TGACAACCTCAAAAATCGGCATCCCCGTCTTAGCCTGTACCAGCTCAAAA
GAGGGACAATTGCACAATTTCAGCCTCCTAGGTTCAATGGTGTGGGAACG
TATGAAGAACATATACATACACGAACACAAATCTCTCTTTTATATATATA
CAGATGATTTAATTTCGTTCCGGGAATCCTCTTCCAATAGGAAGCCGTTA
TGATTGTAAGTAATTCGGTACAACTTTGAAGAACTTTTGAGTAACAAATA
TGACTTTCTTTTTTATAGAAAATATAA

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