EMLSAG00000011118, EMLSAG00000011118-693884 (gene) Lepeophtheirus salmonis
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Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000011118 vs. C. finmarchicus
Match: gi|592914406|gb|GAXK01043969.1| (TSA: Calanus finmarchicus comp1039671_c0_seq1 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 6.387e+0 Identity = 13/29 (44.83%), Postives = 17/29 (58.62%), Query Frame = 0
Query: 34 CEDKASRSKVSDVMRXLGLSDELIKKYEE 62
C + S S VMR LGL E++K Y+E
Sbjct: 1021 CRSEESASSKLLVMRHLGLGKEIMKNYDE 1107
BLAST of EMLSAG00000011118 vs. L. salmonis peptides
Match: EMLSAP00000011118 (pep:novel supercontig:LSalAtl2s:LSalAtl2s7539:315:1161:-1 gene:EMLSAG00000011118 transcript:EMLSAT00000011118 description:"maker-LSalAtl2s7539-augustus-gene-0.0") HSP 1 Score: 193.741 bits (491), Expect = 7.825e-65 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
Query: 1 MKLIHYIAFVQILVLVVDFCSATXFPXKFVGNWCEDKASRSKVSDVMRXLGLSDELIKKYEEGNPMKLDIVYNPXKNDYIFNGTDSIXXXIXWTIQXNSKRKKS 104
MKLIHYIAFVQILVLVVDFCSATXFPXKFVGNWCEDKASRSKVSDVMRXLGLSDELIKKYEEGNPMKLDIVYNPXKNDYIFNGTDSIXXXIXWTIQXNSKRKKS
Sbjct: 1 MKLIHYIAFVQILVLVVDFCSATXFPXKFVGNWCEDKASRSKVSDVMRXLGLSDELIKKYEEGNPMKLDIVYNPXKNDYIFNGTDSIXXXIXWTIQXNSKRKKS 104
BLAST of EMLSAG00000011118 vs. L. salmonis peptides
Match: EMLSAP00000000582 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1099:41129:41757:-1 gene:EMLSAG00000000582 transcript:EMLSAT00000000582 description:"maker-LSalAtl2s1099-snap-gene-0.11") HSP 1 Score: 72.0182 bits (175), Expect = 5.930e-17 Identity = 35/85 (41.18%), Postives = 45/85 (52.94%), Query Frame = 0
Query: 1 MKLIHYIAFVQILVLVVDFCSATXFPXKFVGNWCEDKASRSKVSDVMRXLGLSDELIKKYEEGNPMKLDIVYNPXKNDYIFNGTD 85
MKLI YIA VQ +LVVD+CSA + F G WCE ++R +V + M L E Y NP+ L I YN ++ G D
Sbjct: 1 MKLIKYIALVQTFLLVVDYCSADTYESPFQGKWCEYCSTRDQVQEFMTKLEFPRETTATYVNANPVNLTIHYNQTNQMHVIYGQD 85
BLAST of EMLSAG00000011118 vs. L. salmonis peptides
Match: EMLSAP00000008241 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4989:1444:2126:-1 gene:EMLSAG00000008241 transcript:EMLSAT00000008241 description:"maker-LSalAtl2s4989-augustus-gene-0.2") HSP 1 Score: 70.0922 bits (170), Expect = 2.901e-16 Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 0
Query: 1 MKLIHYIAFVQILVLVVDFCSATXFPXKFVGNWCEDKASRSKVSDVMRXLGLSDELIKKYEEGNPMKLDIVYNPXKNDYIFNGTDSIXXXIXWTIQXNSKR 101
MKL++ I +QI+ LVV+FCSA F G W E++ SR +VM LG+S+++IK Y +G L+I Y P Y G D + I+ N ++
Sbjct: 1 MKLLNCIVLIQIIFLVVEFCSAQNVS-SFEGTWSENEGSRVNFQEVMTELGISEDVIKVYIQGILATLNIFYTPTAFTYAITGNDPRSKTFGFLIRKNQEQ 100
BLAST of EMLSAG00000011118 vs. L. salmonis peptides
Match: EMLSAP00000007695 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4487:6203:6885:-1 gene:EMLSAG00000007695 transcript:EMLSAT00000007695 description:"maker-LSalAtl2s4487-augustus-gene-0.1") HSP 1 Score: 69.3218 bits (168), Expect = 6.404e-16 Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = 0
Query: 1 MKLIHYIAFVQILVLVVDFCSATXFPXKFVGNWCEDKASRSKVSDVMRXLGLSDELIKKYEEGNPMKLDIVYNPXKNDYIFNGTDSIXXXIXWTIQXNSKRKKS 104
MKL++ I +QI+ LV++FCSA F G W E++ SR +VM LG+S+++IK Y +G L+I Y P Y G D + I+ N ++ ++
Sbjct: 1 MKLLNCIVLIQIIFLVLEFCSAQNVS-SFEGTWSENEGSRVNFQEVMTELGISEDVIKVYIQGILATLNIFYTPTAFTYXITGNDPRSKTFGFLIRKNQEQLEA 103
BLAST of EMLSAG00000011118 vs. L. salmonis peptides
Match: EMLSAP00000003904 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2110:17074:17924:-1 gene:EMLSAG00000003904 transcript:EMLSAT00000003904 description:"maker-LSalAtl2s2110-snap-gene-0.2") HSP 1 Score: 66.6254 bits (161), Expect = 1.795e-15 Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 0
Query: 47 MRXLGLSDELIKKYEEGNPMKLDIVYNPXKNDYIFNGTDSIXXXIXWTIQXNSKRKKS 104
M+ +GLSDELIK+YE G+P KLDI Y P ++ YI NGTD I + WT + K KK+
Sbjct: 1 MKLIGLSDELIKQYEVGSPAKLDIDYKPFEDVYIVNGTDPIAHLLNWTFERKQKEKKA 58 The following BLAST results are available for this feature:
BLAST of EMLSAG00000011118 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000011118 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 1
BLAST of EMLSAG00000011118 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000011118 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000011118 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000011118 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000011118 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s7539:315..1161- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000011118-693884 ID=EMLSAG00000011118-693884|Name=EMLSAG00000011118|organism=Lepeophtheirus salmonis|type=gene|length=847bp|location=Sequence derived from alignment at LSalAtl2s7539:315..1161- (Lepeophtheirus salmonis)back to top Add to Basket
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