hypothetical protein, maker-scaffold559_size137194-snap-gene-0.28 (gene) Tigriopus kingsejongensis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of hypothetical protein vs. L. salmonis genes
Match: EMLSAG00000012084 (supercontig:LSalAtl2s:LSalAtl2s864:141096:141668:1 gene:EMLSAG00000012084 transcript:EMLSAT00000012084 description:"augustus_masked-LSalAtl2s864-processed-gene-0.1") HSP 1 Score: 65.4698 bits (158), Expect = 5.603e-14 Identity = 50/156 (32.05%), Postives = 75/156 (48.08%), Query Frame = 0 Query: 6 LGTAGGLLLSRLGNRGN-RGRGSRRRG-SYRGRGYRNGRDVDSVLNSVDYDVADPDMDEALVYLRTASQLDIDSCMKKMICSVNDPKADDYVPDENSNIFQEVFGGDDNSQLDYASKIVDLDLAAEIGKNAGADHCGLIYSRCT---KSTQEILNE 156 +G GGL+ SR G R N R R + G ++R G++N R S +DE L +A+Q D C K+++C VN +++ +E + +F D LD V+ DLAA+IGK G + C ++Y RC K EI N+ Sbjct: 47 VGFVGGLI-SRGGRRRNYRPRYHQNFGYNHRHHGFQNYRFKRS-------------LDEYETILLSAAQNDASDCAKRLVCEVNGTPLENFSKEET--MIARLFNPD---HLDITKITVEFDLAAQIGKRVGIEQCAVLYERCPHDKKKLMEIFND 183
BLAST of hypothetical protein vs. L. salmonis genes
Match: EMLSAG00000012083 (supercontig:LSalAtl2s:LSalAtl2s864:105123:106860:1 gene:EMLSAG00000012083 transcript:EMLSAT00000012083 description:"maker-LSalAtl2s864-augustus-gene-0.14") HSP 1 Score: 61.2326 bits (147), Expect = 2.361e-12 Identity = 40/125 (32.00%), Postives = 60/125 (48.00%), Query Frame = 0 Query: 31 GSYRGRGYRNGRDVDSVLNSVDYDVADPDMDEALVYLRTASQLDIDSCMKKMICSVNDPKADDYVPDENSNIFQEVFGGDDNSQLDYASKIVDLDLAAEIGKNAGADHCGLIYSRCTKSTQEILN 155 G+ GRG R+ D++S+L S ASQ D C KK++C VN + + E + I +F D LD + V+ DLAA+IGK G + C +IY RC + Q+++ Sbjct: 78 GAIIGRGKRSAIDLESLLLS-------------------ASQRDFSDCAKKLVCEVNGLSRAE-IESEXAMI-AALFNADS---LDLSKATVEFDLAAQIGKRVGKEQCAVIYERCPHNRQKLMK 178
BLAST of hypothetical protein vs. L. salmonis genes
Match: EMLSAG00000012085 (supercontig:LSalAtl2s:LSalAtl2s864:165170:165932:1 gene:EMLSAG00000012085 transcript:EMLSAT00000012085 description:"maker-LSalAtl2s864-augustus-gene-0.15") HSP 1 Score: 58.9214 bits (141), Expect = 1.148e-11 Identity = 33/96 (34.38%), Postives = 50/96 (52.08%), Query Frame = 0 Query: 60 MDEALVYLRTASQLDIDSCMKKMICSVNDPKADDYVPDENSNIFQEVFGGDDNSQLDYASKIVDLDLAAEIGKNAGADHCGLIYSRCTKSTQEILN 155 +DE L +ASQ D C KK++C V+ +D +E + +F D LD V+ DLAA+IGK G C +IY RC S +++++ Sbjct: 76 IDEFESVLLSASQHDASDCAKKLVCEVSGLTLEDMNSEET--MIARLFNPD---HLDVTKATVEFDLAAQIGKRVGIQQCSVIYERCPHSRRQLID 166
BLAST of hypothetical protein vs. L. salmonis genes
Match: EMLSAG00000007339 (supercontig:LSalAtl2s:LSalAtl2s414:6177:7412:1 gene:EMLSAG00000007339 transcript:EMLSAT00000007339 description:"snap_masked-LSalAtl2s414-processed-gene-0.6") HSP 1 Score: 58.5362 bits (140), Expect = 3.485e-11 Identity = 31/89 (34.83%), Postives = 48/89 (53.93%), Query Frame = 0 Query: 67 LRTASQLDIDSCMKKMICSVNDPKADDYVPDENSNIFQEVFGGDDNSQLDYASKIVDLDLAAEIGKNAGADHCGLIYSRCTKSTQEILN 155 L +ASQ D C KK++C V+ +D +E + +F D LD V+ DLAA+IGK+ G C +IY RC S +++++ Sbjct: 124 LLSASQHDASDCAKKLVCEVSGLTLEDINSEET--MIARLFNPD---HLDVTKATVEFDLAAQIGKHVGIQQCSIIYQRCPHSRRKLID 207
BLAST of hypothetical protein vs. L. salmonis genes
Match: EMLSAG00000007341 (supercontig:LSalAtl2s:LSalAtl2s414:99526:112093:-1 gene:EMLSAG00000007341 transcript:EMLSAT00000007341 description:"maker-LSalAtl2s414-snap-gene-1.9") HSP 1 Score: 53.9138 bits (128), Expect = 1.131e-9 Identity = 26/88 (29.55%), Postives = 48/88 (54.55%), Query Frame = 0 Query: 67 LRTASQLDIDSCMKKMICSVNDPKADDYVPDENSNIFQEVFGGDDNSQLDYASKIVDLDLAAEIGKNAGADHCGLIYSRCTKSTQEIL 154 L +ASQ D + C K+++C ++ P+E ++ +++ LD + V+ +LAA+IGK G + C +IY RC S +++ Sbjct: 90 LLSASQEDQNDCAKRLVCEISSLPPTAMSPEEI-----QIASAFNSNYLDISKATVEFELAAQIGKRVGLEQCLVIYKRCPHSKAKLM 172
BLAST of hypothetical protein vs. L. salmonis genes
Match: EMLSAG00000007336 (supercontig:LSalAtl2s:LSalAtl2s414:24152:55376:1 gene:EMLSAG00000007336 transcript:EMLSAT00000007336 description:"maker-LSalAtl2s414-augustus-gene-0.14") HSP 1 Score: 49.6766 bits (117), Expect = 7.002e-8 Identity = 24/80 (30.00%), Postives = 44/80 (55.00%), Query Frame = 0 Query: 67 LRTASQLDIDSCMKKMICSVNDPKADDYVPDENSNIFQEVFGGDDNSQLDYASKIVDLDLAAEIGKNAGADHCGLIYSRC 146 L ++SQ D + C K+++C ++ P+E ++ +++ LD + V+ +LAA+IGK G + C +IY RC Sbjct: 305 LLSSSQEDQNDCTKRLVCEISSLPPTAMSPEEI-----QIASVFNSNYLDISKATVEFELAAQIGKRVGLEQCLVIYKRC 379 HSP 2 Score: 48.9062 bits (115), Expect = 1.674e-7 Identity = 24/80 (30.00%), Postives = 43/80 (53.75%), Query Frame = 0 Query: 67 LRTASQLDIDSCMKKMICSVNDPKADDYVPDENSNIFQEVFGGDDNSQLDYASKIVDLDLAAEIGKNAGADHCGLIYSRC 146 L +ASQ D + C K+++C ++ +E ++ +++ LD + V+ +LAA+IGK G + C +IY RC Sbjct: 106 LLSASQEDQNDCAKRLVCEISSLPPTAMSLEEV-----QIASAFNSNYLDISKATVEFELAAQIGKRVGLEQCSVIYKRC 180 The following BLAST results are available for this feature:
BLAST of hypothetical protein vs. L. salmonis genes
Analysis Date: 2018-04-19 (T. kinsejongensis vs L. Salmonis peptides) Total hits: 6
BLAST of hypothetical protein vs. SwissProt
Analysis Date: 2018-04-19 (T. kingejongensis peptided Blastp vs. SwissProt) Total hits: 0
BLAST of hypothetical protein vs. nr
Analysis Date: 2018-05-15 (T. kingsejongensis proteins Blastp vs. NR) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at scaffold559_size137194:42584..43409- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>maker-scaffold559_size137194-snap-gene-0.28 ID=maker-scaffold559_size137194-snap-gene-0.28|Name=hypothetical protein|organism=Tigriopus kingsejongensis|type=gene|length=826bp|location=Sequence derived from alignment at scaffold559_size137194:42584..43409- (Tigriopus kingsejongensis)back to top Synonyms
The feature 'hypothetical protein' has the following synonyms
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