Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
vasopressin v1asnap_masked-scaffold348_size200312-processed-gene-1.4gene
vax1 transcriptionsnap_masked-scaffold295_size218279-processed-gene-1.11gene
vegetative incompatibility protein het-e-1-like isoform x2maker-scaffold447_size167621-snap-gene-0.46gene
velimaker-scaffold294_size218657-snap-gene-0.19gene
venom allergen 3-likemaker-scaffold2399_size16078-snap-gene-0.2gene
venom allergen 3-likemaker-scaffold1703_size30640-snap-gene-0.8gene
venom allergen 3-likemaker-scaffold1686_size31107-snap-gene-0.4gene
venom allergen precursormaker-scaffold336_size202805-snap-gene-1.53gene
venom carboxylesterase-6-likesnap_masked-scaffold161_size295871-processed-gene-1.19gene
venom carboxylesterase-6-likemaker-scaffold337_size202799-snap-gene-0.15gene
venom carboxylesterase-6-likesnap_masked-scaffold104_size368486-processed-gene-0.0gene
venom carboxylesterase-6-likemaker-scaffold415_size178368-snap-gene-0.31gene
venom serine carboxypeptidasemaker-scaffold237_size242172-snap-gene-1.30gene
vesamicol bindingsnap_masked-scaffold22_size673200-processed-gene-5.22gene
vesicle-associated membrane protein-associated protein bmaker-scaffold97_size377342-snap-gene-2.16gene
vesicle-associated membrane protein partialsnap_masked-scaffold209_size256900-processed-gene-0.4gene
vesicle-associated membrane protein partialmaker-scaffold1588_size34843-snap-gene-0.12gene
vesicle coat complex betamaker-scaffold414_size178625-snap-gene-0.28gene
vesicle protein sorting-associatedsnap_masked-scaffold1286_size50552-processed-gene-0.3gene
vesicle-trafficking protein sec22b-bmaker-scaffold10_size831480-snap-gene-3.26gene
vesicle transport protein use1-like isoform x2snap_masked-scaffold474_size162001-processed-gene-0.23gene
vesicle transport through interaction with t-snares homolog 1bmaker-scaffold344_size201325-snap-gene-1.20gene
vesicular glutamate transporter -likemaker-scaffold1581_size34907-snap-gene-0.7gene
vesicular integral-membrane protein vip36 precursormaker-scaffold194_size270518-snap-gene-0.13gene
vesicular monoamine transportermaker-scaffold1846_size26495-snap-gene-0.3gene

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Cross References
External references for this organism
DatabaseAccession
PMID28369352
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