Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
Vigilinsnap_masked-scaffold815_size93432-processed-gene-0.6gene
vin3-like protein 2-likemaker-scaffold974_size74728-snap-gene-0.17gene
Vinculinmaker-scaffold547_size140190-snap-gene-0.23gene
vinculin-like isoform 1maker-scaffold1333_size47127-snap-gene-0.11gene
viral iap-associated factor homologmaker-scaffold10_size831480-snap-gene-6.9gene
virulence factormaker-scaffold104_size368486-snap-gene-2.39gene
visual system homeobox 2-likemaker-scaffold796_size95996-snap-gene-0.15gene
vitamin d3maker-scaffold120_size336265-snap-gene-1.11gene
vitamin d3 receptor bmaker-scaffold267_size230776-snap-gene-1.25gene
vitamin d3 receptor b-likesnap_masked-scaffold1268_size51707-processed-gene-0.2gene
vitamin d3 receptor b-likesnap_masked-scaffold2498_size15023-processed-gene-0.1gene
vitamin d3 receptor b-likesnap_masked-scaffold252_size238019-processed-gene-1.16gene
vitamin d3 receptor-likemaker-scaffold188_size271682-snap-gene-1.24gene
vitamin k-dependent protein c-likemaker-scaffold1_size3401120-snap-gene-14.42gene
vitellogeninmaker-scaffold246_size239296-snap-gene-1.36gene
vitellogenin 2maker-scaffold45_size475391-snap-gene-3.18gene
vitellogenin 2maker-scaffold1283_size50765-snap-gene-0.10gene
vitellogenin 2maker-scaffold1283_size50765-snap-gene-0.9gene
vitellogenin-like proteinmaker-scaffold260_size234135-snap-gene-0.15gene
vitellogenin receptormaker-scaffold507_size152468-snap-gene-0.33gene
vitellogenin-superoxide dismutase fusion proteinmaker-scaffold1083_size63694-snap-gene-0.14gene
voltage-dependent anion-selective channelmaker-scaffold22_size673200-snap-gene-1.20gene
voltage-dependent calcium channelmaker-scaffold367_size194084-snap-gene-0.43gene
voltage-dependent calcium channel subunit alpha-2 delta-1-likemaker-scaffold87_size395581-snap-gene-0.15gene
voltage-dependent calcium channel type a subunit alpha-1 isoform x7maker-scaffold210_size256293-snap-gene-1.25gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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