Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
chitinase-3-like protein 3maker-scaffold441_size170131-snap-gene-0.40gene
chitinase domain-containing protein 1 precursorsnap_masked-scaffold856_size87843-processed-gene-0.3gene
chitinase isoform x1maker-scaffold328_size205007-snap-gene-0.19gene
chitin binding peritrophin-maker-scaffold241_size241811-snap-gene-1.14gene
chitin-binding proteinsnap_masked-scaffold1188_size56401-processed-gene-0.2gene
chitin binding protein domain containing proteinmaker-scaffold237_size242172-snap-gene-1.32gene
chitin deacetylasesnap_masked-scaffold1188_size56401-processed-gene-0.3gene
chitin deacetylase 2 isoform a precursormaker-scaffold951_size77354-snap-gene-0.7gene
chitin synthasemaker-scaffold84_size396325-snap-gene-2.42gene
chitin synthase 1 isoform x1maker-scaffold1058_size66152-snap-gene-0.13gene
chitooligosaccharidolytic beta-n-acetylglucosaminidasemaker-scaffold50_size457468-snap-gene-1.13gene
chitooligosaccharidolytic beta-n-acetylglucosaminidase isoform x1maker-scaffold384_size188899-snap-gene-0.28gene
chitotriosidase-1 isoform x2maker-scaffold556_size137522-snap-gene-0.37gene
chitotriosidase-1-like isoform x1maker-scaffold110_size354795-snap-gene-2.23gene
chloride channel proteinmaker-scaffold452_size166894-snap-gene-0.37gene
chloride channel protein 2 isoform x2snap_masked-scaffold30_size591359-processed-gene-2.10gene
chloride intracellular channel exc-4maker-scaffold246_size239296-snap-gene-0.22gene
chloride intracellular channel exc-4snap_masked-scaffold11_size778918-processed-gene-2.7gene
cholesterol oxidasemaker-scaffold1028_size131186-snap-gene-0.46gene
choline dehydrogenasemaker-scaffold2_size2283618-snap-gene-15.47gene
choline dehydrogenasemaker-scaffold7610_size3089-snap-gene-0.2gene
choline dehydrogenasesnap_masked-scaffold10103_size2266-processed-gene-0.1gene
choline dehydrogenasesnap_masked-scaffold1244_size53516-processed-gene-0.7gene
choline dehydrogenasesnap_masked-scaffold1433_size41457-processed-gene-0.5gene
choline dehydrogenasesnap_masked-scaffold2_size2283618-processed-gene-0.24gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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